ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags37h15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468115.1| Oryza sativa (japonica cultivar-group), mRNA 250 2e-63
2dbj|AK061791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 250 2e-63
3gb|AY224477.1| Oryza sativa (japonica cultivar-group) isolate 29... 234 1e-58
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 168 6e-39
5dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic D... 168 6e-39
6gb|BT017915.1| Zea mays clone EL01N0518E08.c mRNA sequence 50 0.004
7dbj|AP006398.1| Lotus japonicus genomic DNA, chromosome 5, clone... 42 0.97
8ref|XM_510424.1| PREDICTED: Pan troglodytes similar to unc-13 ho... 40 3.8
9gb|AC115789.9| Mus musculus chromosome 18, clone RP23-398N2, com... 40 3.8
10ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome reg... 40 3.8
11emb|BX908750.17| Zebrafish DNA sequence from clone DKEY-193E13 i... 40 3.8
12gb|AY894981.1| Climacteris picumnus clone Cpi1 microsatellite se... 40 3.8
13emb|BX324164.15| Zebrafish DNA sequence from clone DKEY-14D8 in ... 40 3.8
14emb|BX649467.5| Zebrafish DNA sequence from clone CH211-117L16 i... 40 3.8
15gb|AC161034.23| Medicago truncatula clone mth2-53o24, complete s... 40 3.8
16ref|XM_939802.1| PREDICTED: Homo sapiens similar to Unc-13 homol... 40 3.8
17ref|XM_085234.6| PREDICTED: Homo sapiens similar to Unc-13 homol... 40 3.8
18gb|AC010867.8| Homo sapiens chromosome 15 clone RP11-390M11 map ... 40 3.8
19dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
20gb|AC090602.16| Homo sapiens chromosome 15, clone RP11-125E1, co... 40 3.8
21dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 40 3.8
22dbj|AP005197.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
23gb|AY106369.1| Zea mays PCO141497 mRNA sequence 40 3.8
24emb|BX465204.5| Zebrafish DNA sequence from clone CH211-160N19 i... 40 3.8 
>ref|XM_468115.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1331

 Score =  250 bits (126), Expect = 2e-63
 Identities = 229/264 (86%), Gaps = 6/264 (2%)
 Strand = Plus / Plus

                                                                       
Query: 32  tcttctcaaatcgagggtcgaatcacctgaatttctagaaaagcttgataacattcagaa 91
           |||||||||||||||||| | ||| ||||||||||| ||||| || ||||| ||||||||
Sbjct: 459 tcttctcaaatcgagggttgcatcgcctgaatttcttgaaaaactcgataatattcagaa 518

                                                                       
Query: 92  gtcagtataccaacatggtgcagtagatgaaaccatatcatgggatatcgtaagtgcagc 151
           ||| ||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 519 gtcggtatatcaaaatggtgcagtagatgaaactatatcatgggatatcataagtgcggc 578

                                                                       
Query: 152 agatatatggga------tgataagagtatgaatgtaagtgatgattcagaggatggata 205
           ||| ||||||||      ||| ||| |||||||  | |||||||||||||||||||||||
Sbjct: 579 agacatatgggacgacattgacaagggtatgaacattagtgatgattcagaggatggata 638

                                                                       
Query: 206 tgttctagttaagcaagaggatatagttgatgggattgnatgcttcatggctgcatacct 265
           ||||||  |||| |||||||| ||||||||||| |||| | ||||||||||||||||| |
Sbjct: 639 tgttctcattaaacaagaggacatagttgatggtattgcaagcttcatggctgcatactt 698

                                   
Query: 266 gctgtcgctgatagaaactaagga 289
           ||||||||||| | ||||||||||
Sbjct: 699 gctgtcgctgaaacaaactaagga 722
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>dbj|AK061791.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-F04, full
           insert sequence
          Length = 1331

 Score =  250 bits (126), Expect = 2e-63
 Identities = 229/264 (86%), Gaps = 6/264 (2%)
 Strand = Plus / Plus

                                                                       
Query: 32  tcttctcaaatcgagggtcgaatcacctgaatttctagaaaagcttgataacattcagaa 91
           |||||||||||||||||| | ||| ||||||||||| ||||| || ||||| ||||||||
Sbjct: 459 tcttctcaaatcgagggttgcatcgcctgaatttcttgaaaaactcgataatattcagaa 518

                                                                       
Query: 92  gtcagtataccaacatggtgcagtagatgaaaccatatcatgggatatcgtaagtgcagc 151
           ||| ||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 519 gtcggtatatcaaaatggtgcagtagatgaaactatatcatgggatatcataagtgcggc 578

                                                                       
Query: 152 agatatatggga------tgataagagtatgaatgtaagtgatgattcagaggatggata 205
           ||| ||||||||      ||| ||| |||||||  | |||||||||||||||||||||||
Sbjct: 579 agacatatgggacgacattgacaagggtatgaacattagtgatgattcagaggatggata 638

                                                                       
Query: 206 tgttctagttaagcaagaggatatagttgatgggattgnatgcttcatggctgcatacct 265
           ||||||  |||| |||||||| ||||||||||| |||| | ||||||||||||||||| |
Sbjct: 639 tgttctcattaaacaagaggacatagttgatggtattgcaagcttcatggctgcatactt 698

                                   
Query: 266 gctgtcgctgatagaaactaagga 289
           ||||||||||| | ||||||||||
Sbjct: 699 gctgtcgctgaaacaaactaagga 722
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>gb|AY224477.1| Oryza sativa (japonica cultivar-group) isolate 29089 unknown mRNA
          Length = 1132

 Score =  234 bits (118), Expect = 1e-58
 Identities = 225/264 (85%), Gaps = 6/264 (2%)
 Strand = Plus / Plus

                                                                       
Query: 32  tcttctcaaatcgagggtcgaatcacctgaatttctagaaaagcttgataacattcagaa 91
           |||||||||||||||||| | ||| ||||||||||| ||||| || ||||| ||||||||
Sbjct: 486 tcttctcaaatcgagggttgcatcgcctgaatttcttgaaaaactcgataatattcagaa 545

                                                                       
Query: 92  gtcagtataccaacatggtgcagtagatgaaaccatatcatgggatatcgtaagtgcagc 151
           ||| ||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 546 gtcggtatatcaaaatggtgcagtagatgaaactatatcatgggatatcataagtgcggc 605

                                                                       
Query: 152 agatatatggga------tgataagagtatgaatgtaagtgatgattcagaggatggata 205
           ||| ||||||||      ||| ||| |||||||  | |||||||||||||||||||||||
Sbjct: 606 agacatatgggacgacattgacaagggtatgaacattagtgatgattcagaggatggata 665

                                                                       
Query: 206 tgttctagttaagcaagaggatatagttgatgggattgnatgcttcatggctgcatacct 265
           ||||||  |||| || ||||| ||||||||||| ||||   |||| |||||||||||| |
Sbjct: 666 tgttctcattaaacamgaggacatagttgatggtattgcmagcttsatggctgcatactt 725

                                   
Query: 266 gctgtcgctgatagaaactaagga 289
           ||||||||||| | ||||||| ||
Sbjct: 726 gctgtcgctgaaacaaactaarga 749
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  168 bits (85), Expect = 6e-39
 Identities = 158/183 (86%), Gaps = 6/183 (3%)
 Strand = Plus / Minus

                                                                            
Query: 112      cagtagatgaaaccatatcatgggatatcgtaagtgcagcagatatatggga------tg 165
                ||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||      ||
Sbjct: 33144634 cagtagatgaaactatatcatgggatatcataagtgcggcagacatatgggacgacattg 33144575

                                                                            
Query: 166      ataagagtatgaatgtaagtgatgattcagaggatggatatgttctagttaagcaagagg 225
                | ||| |||||||  | |||||||||||||||||||||||||||||  |||| |||||||
Sbjct: 33144574 acaagggtatgaacattagtgatgattcagaggatggatatgttctcattaaacaagagg 33144515

                                                                            
Query: 226      atatagttgatgggattgnatgcttcatggctgcatacctgctgtcgctgatagaaacta 285
                | ||||||||||| |||| | ||||||||||||||||| |||||||||||| | ||||||
Sbjct: 33144514 acatagttgatggtattgcaagcttcatggctgcatacttgctgtcgctgaaacaaacta 33144455

                   
Query: 286      agg 288
                |||
Sbjct: 33144454 agg 33144452



 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                            
Query: 32       tcttctcaaatcgagggtcgaatcacctgaatttctagaaaagcttgataacattcagaa 91
                |||||||||||||||||| | ||| ||||||||||| ||||| || ||||| ||||||||
Sbjct: 33144858 tcttctcaaatcgagggttgcatcgcctgaatttcttgaaaaactcgataatattcagaa 33144799

                                       
Query: 92       gtcagtataccaacatggtgcag 114
                ||| ||||| ||| |||||||||
Sbjct: 33144798 gtcggtatatcaaaatggtgcag 33144776
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>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1369_G08
          Length = 104190

 Score =  168 bits (85), Expect = 6e-39
 Identities = 158/183 (86%), Gaps = 6/183 (3%)
 Strand = Plus / Minus

                                                                         
Query: 112   cagtagatgaaaccatatcatgggatatcgtaagtgcagcagatatatggga------tg 165
             ||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||      ||
Sbjct: 60294 cagtagatgaaactatatcatgggatatcataagtgcggcagacatatgggacgacattg 60235

                                                                         
Query: 166   ataagagtatgaatgtaagtgatgattcagaggatggatatgttctagttaagcaagagg 225
             | ||| |||||||  | |||||||||||||||||||||||||||||  |||| |||||||
Sbjct: 60234 acaagggtatgaacattagtgatgattcagaggatggatatgttctcattaaacaagagg 60175

                                                                         
Query: 226   atatagttgatgggattgnatgcttcatggctgcatacctgctgtcgctgatagaaacta 285
             | ||||||||||| |||| | ||||||||||||||||| |||||||||||| | ||||||
Sbjct: 60174 acatagttgatggtattgcaagcttcatggctgcatacttgctgtcgctgaaacaaacta 60115

                
Query: 286   agg 288
             |||
Sbjct: 60114 agg 60112



 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                         
Query: 32    tcttctcaaatcgagggtcgaatcacctgaatttctagaaaagcttgataacattcagaa 91
             |||||||||||||||||| | ||| ||||||||||| ||||| || ||||| ||||||||
Sbjct: 60518 tcttctcaaatcgagggttgcatcgcctgaatttcttgaaaaactcgataatattcagaa 60459

                                    
Query: 92    gtcagtataccaacatggtgcag 114
             ||| ||||| ||| |||||||||
Sbjct: 60458 gtcggtatatcaaaatggtgcag 60436
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>gb|BT017915.1| Zea mays clone EL01N0518E08.c mRNA sequence
          Length = 1130

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 193 cagaggatggatatgttctagttaagcaagaggatatagttgatgggat 241
           |||| |||||||||||||| |||||||| || ||| | |||||||||||
Sbjct: 496 cagatgatggatatgttcttgttaagcaggaagatgtggttgatgggat 544
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>dbj|AP006398.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT29J15, TM0280b,
             complete sequence
          Length = 68747

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 163   atgataagagtatgaatgtaa 183
             |||||||||||||||||||||
Sbjct: 54674 atgataagagtatgaatgtaa 54654
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>ref|XM_510424.1| PREDICTED: Pan troglodytes similar to unc-13 homolog C; Munc13-3
            (LOC453453), mRNA
          Length = 6486

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  aagtgatgattcagaggatg 201
            ||||||||||||||||||||
Sbjct: 2256 aagtgatgattcagaggatg 2275
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>gb|AC115789.9| Mus musculus chromosome 18, clone RP23-398N2, complete sequence
          Length = 206108

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     gaaaagcttgataacattca 88
              ||||||||||||||||||||
Sbjct: 150184 gaaaagcttgataacattca 150203
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>ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome region (PWSAS@) on chromosome
              15
          Length = 755217

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     taacattcagaagtcagtat 99
              ||||||||||||||||||||
Sbjct: 142826 taacattcagaagtcagtat 142845
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>emb|BX908750.17| Zebrafish DNA sequence from clone DKEY-193E13 in linkage group 2,
             complete sequence
          Length = 171327

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   gcagatatatgggatgataa 169
             ||||||||||||||||||||
Sbjct: 95405 gcagatatatgggatgataa 95386
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>gb|AY894981.1| Climacteris picumnus clone Cpi1 microsatellite sequence
          Length = 452

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 atgggatgataagagtatga 177
           ||||||||||||||||||||
Sbjct: 137 atgggatgataagagtatga 118
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>emb|BX324164.15| Zebrafish DNA sequence from clone DKEY-14D8 in linkage group 4
           Contains the gene for a novel protein similar to
           vertebrate selenoprotein family, the gene for a novel
           protein similar to vertebrate vascular endothelial
           growth factor (VEGF), the gene for a novel protein
           similar to vertebrate mitogen-activated protein kinase
           family, the gene for a novel protein similar to
           vertebrate mitogen-activated protein kinase family, the
           gene for a novel protein similar to vertebrate scavenger
           receptor protein, two genes for novel proteins similar
           to vertebrate protein deleted in malignant brain tumors
           1, fifteen novel genes and three CpG islands, complete
           sequence
          Length = 264155

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 gcagatatatgggatgataa 169
           ||||||||||||||||||||
Sbjct: 947 gcagatatatgggatgataa 928
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>emb|BX649467.5| Zebrafish DNA sequence from clone CH211-117L16 in linkage group 4
             Contains the gene for a novel protein similar to
             vertebrate mitochondrial ribosomal protein S18A (MRPS18A)
             and two novel genes, complete sequence
          Length = 74769

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   gcagatatatgggatgataa 169
             ||||||||||||||||||||
Sbjct: 73716 gcagatatatgggatgataa 73697
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>gb|AC161034.23| Medicago truncatula clone mth2-53o24, complete sequence
          Length = 128806

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   tatgaatgtaagtgatgatt 192
             ||||||||||||||||||||
Sbjct: 93393 tatgaatgtaagtgatgatt 93374
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>ref|XM_939802.1| PREDICTED: Homo sapiens similar to Unc-13 homolog C (Munc13-3)
            (LOC650716), mRNA
          Length = 2997

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  aagtgatgattcagaggatg 201
            ||||||||||||||||||||
Sbjct: 2301 aagtgatgattcagaggatg 2320
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>ref|XM_085234.6| PREDICTED: Homo sapiens similar to Unc-13 homolog C (Munc13-3)
            (LOC645760), mRNA
          Length = 2997

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  aagtgatgattcagaggatg 201
            ||||||||||||||||||||
Sbjct: 2301 aagtgatgattcagaggatg 2320
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>gb|AC010867.8| Homo sapiens chromosome 15 clone RP11-390M11 map 15q21.3, complete
             sequence
          Length = 221631

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   aagtgatgattcagaggatg 201
             ||||||||||||||||||||
Sbjct: 28277 aagtgatgattcagaggatg 28296
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 190     attcagaggatggatatgtt 209
               ||||||||||||||||||||
Sbjct: 6826814 attcagaggatggatatgtt 6826795
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>gb|AC090602.16| Homo sapiens chromosome 15, clone RP11-125E1, complete sequence
          Length = 174707

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     taacattcagaagtcagtat 99
              ||||||||||||||||||||
Sbjct: 142826 taacattcagaagtcagtat 142845
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>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 60      gaatttctagaaaagcttga 79
               ||||||||||||||||||||
Sbjct: 1680317 gaatttctagaaaagcttga 1680298
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>dbj|AP005197.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0592C06
          Length = 160071

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    attcagaggatggatatgtt 209
              ||||||||||||||||||||
Sbjct: 120948 attcagaggatggatatgtt 120929
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>gb|AY106369.1| Zea mays PCO141497 mRNA sequence
          Length = 669

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 192 tcagaggatggatatgttctagttaagcaagaggat 227
           ||||| ||||||||||| || |||||||| ||||||
Sbjct: 628 tcagatgatggatatgtactggttaagcaggaggat 663
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>emb|BX465204.5| Zebrafish DNA sequence from clone CH211-160N19 in linkage group 22,
             complete sequence
          Length = 168776

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   gcagatatatgggatgataa 169
             ||||||||||||||||||||
Sbjct: 94745 gcagatatatgggatgataa 94726


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,694,878
Number of Sequences: 3902068
Number of extensions: 2694878
Number of successful extensions: 42322
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42243
Number of HSP's gapped (non-prelim): 79
length of query: 293
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 271
effective length of database: 17,147,199,772
effective search space: 4646891138212
effective search space used: 4646891138212
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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