Clone Information

BLAST Search Result

Clone Name	bags37h05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PTBP1_ARATH (Q9MAC5) Polypyrimidine tract-binding protein homolog 1	159	5e-39
2	PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2	150	2e-36
3	PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neura...	85	1e-16
4	PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Bra...	85	1e-16
5	PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neu...	85	1e-16
6	ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)	85	1e-16
7	ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)	85	2e-16
8	PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB) ...	85	2e-16
9	ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)	84	2e-16
10	PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB...	84	2e-16
11	PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)	84	2e-16
12	PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB...	83	5e-16
13	PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB) ...	83	6e-16
14	PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3	82	1e-15
15	HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like	70	5e-12
16	HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-l...	70	5e-12
17	HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (...	68	2e-11
18	HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (...	68	2e-11
19	RNP4F_DROME (Q9W4D2) RNA-binding protein 4F	34	0.33
20	CLK1_HUMAN (P49759) Dual specificity protein kinase CLK1 (EC 2.7...	33	0.74
21	SAP49_SCHPO (O14102) Spliceosome-associated protein 49	32	1.3
22	REC11_SCHPO (Q92380) Meiotic recombination protein rec11	32	1.7
23	T55BA_BRARE (Q32PR0) Transmembrane protein 55B-A (EC 3.1.3.-) (T...	32	1.7
24	MRCKA_HUMAN (Q5VT25) Serine/threonine-protein kinase MRCK alpha ...	32	1.7
25	MRCKA_RAT (O54874) Serine/threonine-protein kinase MRCK alpha (E...	31	2.2
26	RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p...	31	2.8
27	EGR1_COTJA (O73692) Early growth response protein 1 (EGR-1) (Zin...	31	2.8
28	TCL1B_HUMAN (O95988) T-cell leukemia/lymphoma protein 1B (TCL1B ...	30	4.8
29	PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein	30	6.3
30	MIR1_MHV68 (O41933) Modulator of immune recognition 1 homolog (E...	30	6.3
31	MRCKB_HUMAN (Q9Y5S2) Serine/threonine-protein kinase MRCK beta (...	30	6.3
32	ETV2_MOUSE (P41163) ETS translocation variant 2 (Ets-related pro...	30	6.3
33	CATB_STRRE (O87864) Peroxidase/catalase (EC 1.11.1.6) (Catalase-...	30	6.3
34	SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-dete...	30	6.3
35	EGR1_CHICK (O73691) Early growth response protein 1 (EGR-1) (Zin...	30	6.3
36	CECR5_MOUSE (Q91WM2) Cat eye syndrome critical region protein 5 ...	29	8.2
37	ZCH14_HUMAN (Q8WYQ9) Zinc finger CCHC domain-containing protein ...	29	8.2
38	CX017_MOUSE (Q8C3F2) Protein CXorf17 homolog	29	8.2
39	UBE3C_MOUSE (Q80U95) Ubiquitin-protein ligase E3C (EC 6.3.2.-)	29	8.2
40	UBE3C_HUMAN (Q15386) Ubiquitin-protein ligase E3C (EC 6.3.2.-)	29	8.2

>PTBP1_ARATH (Q9MAC5) Polypyrimidine tract-binding protein homolog 1|
          Length = 399

 Score =  159 bits (402), Expect = 5e-39
 Identities = 88/150 (58%), Positives = 100/150 (66%), Gaps = 6/150 (4%)
 Frame = +1

Query: 25  NMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHCIYDG 204
           NMQYAV VDVLHTVFS++G VQKIA+FEKNG  QALIQY DI TA +AK+ALEGHCIYDG
Sbjct: 251 NMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCIYDG 310

Query: 205 GYCKLHLSYSRHTDLNVKAHDERSRDYTVLDPSARVQAPPGVVWQSTTPAGFYGSSAGAT 384
           GYCKL LSYSRHTDLNVKA  ++SRDYT+ D S  V      V  S  PAG+    A + 
Sbjct: 311 GYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAPPAGWQNPQAQSQ 370

Query: 385 SVG------QVPTWNPNMQRGAFASASTSY 456
             G        P+ +PN   GA  S    Y
Sbjct: 371 YSGYGGSPYMYPSSDPN---GASPSGQPPY 397



 Score = 93.2 bits (230), Expect = 5e-19
 Identities = 47/91 (51%), Positives = 58/91 (63%), Gaps = 6/91 (6%)
 Frame = +1

Query: 34  YAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHCI------ 195
           + V +DV+H VFS+FG V KIA FEK  G QAL+Q+ D+ TA  A+ AL+G  I      
Sbjct: 122 HEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLS 181

Query: 196 YDGGYCKLHLSYSRHTDLNVKAHDERSRDYT 288
              G C L +SYS HTDLN+K    RSRDYT
Sbjct: 182 AHVGSCSLRMSYSAHTDLNIKFQSHRSRDYT 212

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>PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2|
          Length = 429

 Score =  150 bits (379), Expect = 2e-36
 Identities = 68/100 (68%), Positives = 86/100 (86%)
 Frame = +1

Query: 25  NMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHCIYDG 204
           NMQYAV +DVLH VF++FG VQKIAMF+KNGG+QALIQY D+ TA VAK+ALEGHCIYDG
Sbjct: 252 NMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDG 311

Query: 205 GYCKLHLSYSRHTDLNVKAHDERSRDYTVLDPSARVQAPP 324
           G+CKLH++YSRHTDL++K +++RSRDYT+ +P   +   P
Sbjct: 312 GFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPVPMPQQP 351



 Score = 87.4 bits (215), Expect = 3e-17
 Identities = 47/89 (52%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
 Frame = +1

Query: 40  VGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHCI------YD 201
           V +DVLH VFS+FG V KI  FEK  G QAL+Q+ D  TA  AK AL+G  I        
Sbjct: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAET 184

Query: 202 GGYCKLHLSYSRHTDLNVKAHDERSRDYT 288
            G C L ++YS HTDL VK    RSRDYT
Sbjct: 185 VGQCSLKITYSAHTDLTVKFQSHRSRDYT 213

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>PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neural|
           polypyrimidine tract-binding protein) (PTB-like protein)
          Length = 531

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 45/88 (51%), Positives = 58/88 (65%)
 Frame = +1

Query: 25  NMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHCIYDG 204
           NM Y V +DVLH +FS FGAV KI  F KN   QAL+QY D   A  AK AL+G  IY+ 
Sbjct: 187 NMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN- 245

Query: 205 GYCKLHLSYSRHTDLNVKAHDERSRDYT 288
             C L + +S+  +LNVK ++++SRDYT
Sbjct: 246 ACCTLRIDFSKLVNLNVKYNNDKSRDYT 273

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>PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Brain-enriched|
           polypyrimidine tract-binding protein) (Brain-enriched
           PTB) (RRM-type RNA-binding protein brPTB) (Neural
           polypyrimidine tract-binding protein)
          Length = 531

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 45/88 (51%), Positives = 58/88 (65%)
 Frame = +1

Query: 25  NMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHCIYDG 204
           NM Y V +DVLH +FS FGAV KI  F KN   QAL+QY D   A  AK AL+G  IY+ 
Sbjct: 187 NMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN- 245

Query: 205 GYCKLHLSYSRHTDLNVKAHDERSRDYT 288
             C L + +S+  +LNVK ++++SRDYT
Sbjct: 246 ACCTLRIDFSKLVNLNVKYNNDKSRDYT 273

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>PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neurally-enriched|
           homolog of PTB) (Neural polypyrimidine tract-binding
           protein) (PTB-like protein)
          Length = 531

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 45/88 (51%), Positives = 58/88 (65%)
 Frame = +1

Query: 25  NMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHCIYDG 204
           NM Y V +DVLH +FS FGAV KI  F KN   QAL+QY D   A  AK AL+G  IY+ 
Sbjct: 187 NMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN- 245

Query: 205 GYCKLHLSYSRHTDLNVKAHDERSRDYT 288
             C L + +S+  +LNVK ++++SRDYT
Sbjct: 246 ACCTLRIDFSKLVNLNVKYNNDKSRDYT 273

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>ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)|
          Length = 521

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 50/130 (38%), Positives = 69/130 (53%), Gaps = 12/130 (9%)
 Frame = +1

Query: 25  NMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHCIYDG 204
           N+ Y V ++VLH +FS FG V KI  F KN   QAL+QY D   A  AK AL+G  IY+ 
Sbjct: 157 NLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYN- 215

Query: 205 GYCKLHLSYSRHTDLNVKAHDERSRDYTVLD------------PSARVQAPPGVVWQSTT 348
             C L + +S+ T LNVK ++++SRD+T LD            P A     PG++     
Sbjct: 216 ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYA 275

Query: 349 PAGFYGSSAG 378
            A  +  + G
Sbjct: 276 GAAGFAPAIG 285

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>ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 57/145 (39%), Positives = 75/145 (51%), Gaps = 19/145 (13%)
 Frame = +1

Query: 25  NMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHCIYDG 204
           N+ Y V ++VLH +FS FG V KI  F KN   QAL+QY D   A  AK AL+G  IY+ 
Sbjct: 159 NLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYN- 217

Query: 205 GYCKLHLSYSRHTDLNVKAHDERSRDYTVLD------------PSARVQAPPGVVWQSTT 348
             C L + +S+ T LNVK ++++SRD+T LD            P A     PG++  S+ 
Sbjct: 218 ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIM--SSP 275

Query: 349 PAGFYG-------SSAGATSVGQVP 402
            AG  G         A   SV  VP
Sbjct: 276 YAGAAGFAPAIAFPQAAGLSVSAVP 300

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>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (Pyrimidine-binding protein) (PYBP)
          Length = 555

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 54/132 (40%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
 Frame = +1

Query: 13  INARNMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHC 192
           I   N+ Y V +DVLH +FS FG V KI  F KN   QAL+QY D  +A  AK +L+G  
Sbjct: 185 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN 244

Query: 193 IYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTVLD-PSARVQAPPGVVWQSTTPAGFYGS 369
           IY+   C L + +S+ T LNVK ++++SRDYT  D PS   Q  P +        G  G 
Sbjct: 245 IYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQ--PSLDQTMAAAFGAPGI 301

Query: 370 SAGATSVGQVPT 405
            + +   G VP+
Sbjct: 302 MSASPYAGAVPS 313



 Score = 29.3 bits (64), Expect = 8.2
 Identities = 23/78 (29%), Positives = 38/78 (48%)
 Frame = +1

Query: 10  SINARNMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGH 189
           +++  N+  +V  D L ++FSS G V K   F +     ALIQ   +  A  A   L  H
Sbjct: 479 TLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNH 538

Query: 190 CIYDGGYCKLHLSYSRHT 243
            + +  +  L +S+S+ T
Sbjct: 539 DLGENHH--LRVSFSKST 554

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>ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 44/91 (48%), Positives = 59/91 (64%)
 Frame = +1

Query: 25  NMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHCIYDG 204
           N+ Y V ++VLH +FS FG V KI  F KN   QAL+QY D   A  AK AL+G  IY+ 
Sbjct: 159 NLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYN- 217

Query: 205 GYCKLHLSYSRHTDLNVKAHDERSRDYTVLD 297
             C L + +S+ T LNVK ++++SRD+T LD
Sbjct: 218 ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLD 248

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>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (57 kDa RNA-binding protein PPTB-1)
          Length = 531

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 62/167 (37%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
 Frame = +1

Query: 13  INARNMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHC 192
           I   N+ Y V +DVLH +FS FG V KI  F KN   QAL+QY D  +A  AK +L+G  
Sbjct: 186 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN 245

Query: 193 IYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTVLD-PSARVQAPPGVVWQSTTPAGFYGS 369
           IY+   C L + +S+ T LNVK ++++SRDYT  D PS   Q  P +     T A  +G 
Sbjct: 246 IYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQ--PSL---DQTMAAAFGL 299

Query: 370 SAGATSVGQVPTWNPNMQRGAFASASTSYP-------TQLLMANPGP 489
           S         P   P+    A A+   + P       + LL++N  P
Sbjct: 300 SVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNP 346

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>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)|
          Length = 531

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 62/167 (37%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
 Frame = +1

Query: 13  INARNMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHC 192
           I   N+ Y V +DVLH +FS FG V KI  F KN   QAL+QY D  +A  AK +L+G  
Sbjct: 186 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN 245

Query: 193 IYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTVLD-PSARVQAPPGVVWQSTTPAGFYGS 369
           IY+   C L + +S+ T LNVK ++++SRDYT  D PS   Q  P +     T A  +G 
Sbjct: 246 IYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQ--PSL---DQTMAAAFGL 299

Query: 370 SAGATSVGQVPTWNPNMQRGAFASASTSYP-------TQLLMANPGP 489
           S         P   P+    A A+   + P       + LL++N  P
Sbjct: 300 SVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNP 346

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>PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 527

 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 58/144 (40%), Positives = 76/144 (52%), Gaps = 1/144 (0%)
 Frame = +1

Query: 13  INARNMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHC 192
           I   N+ Y V +DVLH +FS FG V KI  F KN   QAL+QY D  +A  AK +L+G  
Sbjct: 185 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN 244

Query: 193 IYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTVLD-PSARVQAPPGVVWQSTTPAGFYGS 369
           IY+   C L + +S+ T LNVK ++++SRDYT  D PS   Q  P +     T A  +G 
Sbjct: 245 IYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQ--PSL---DQTMAAAFGL 298

Query: 370 SAGATSVGQVPTWNPNMQRGAFAS 441
           S         P   P+    A AS
Sbjct: 299 SVPNVHGALAPLAIPSAAAAAAAS 322



 Score = 29.3 bits (64), Expect = 8.2
 Identities = 23/78 (29%), Positives = 38/78 (48%)
 Frame = +1

Query: 10  SINARNMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGH 189
           +++  N+  +V  D L ++FSS G V K   F +     ALIQ   +  A  A   L  H
Sbjct: 451 TLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNH 510

Query: 190 CIYDGGYCKLHLSYSRHT 243
            + +  +  L +S+S+ T
Sbjct: 511 DLGENHH--LRVSFSKST 526

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>PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 557

 Score = 82.8 bits (203), Expect = 6e-16
 Identities = 44/92 (47%), Positives = 59/92 (64%)
 Frame = +1

Query: 13  INARNMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHC 192
           I   N+ Y V +DVLH +FS FG V KI  F KN   QAL+QY D  +A  AK +L+G  
Sbjct: 186 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN 245

Query: 193 IYDGGYCKLHLSYSRHTDLNVKAHDERSRDYT 288
           IY+   C L + +S+ T LNVK ++++SRDYT
Sbjct: 246 IYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYT 276

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>PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3|
          Length = 432

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 42/92 (45%), Positives = 59/92 (64%)
 Frame = +1

Query: 13  INARNMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHC 192
           +   +M Y + VDVLH VFS +G V+K+  F+K+ G QALIQY     A  A+ AL+G  
Sbjct: 103 VTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRN 162

Query: 193 IYDGGYCKLHLSYSRHTDLNVKAHDERSRDYT 288
           IYD G C+L + +S   +L V  +++RSRDYT
Sbjct: 163 IYD-GCCQLDIQFSNLEELQVNYNNDRSRDYT 193



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 13  INARNMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQ 174
           ++ RN+ + +  + L  +F  FG + K+ M       QAL+Q  D+++A  A Q
Sbjct: 8   VHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKN--QALLQMQDVSSAVSALQ 59

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>HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like|
          Length = 591

 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 39/92 (42%), Positives = 58/92 (63%)
 Frame = +1

Query: 13  INARNMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHC 192
           ++ +N  Y + VDVL+TV +  G VQ+I +F++N G+QA++++  +  A  AK AL G  
Sbjct: 220 LSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGAD 278

Query: 193 IYDGGYCKLHLSYSRHTDLNVKAHDERSRDYT 288
           IY  G C L + Y+R T LNV  +D  S DYT
Sbjct: 279 IY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT 309

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>HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-like (Stromal|
           RNA-regulating factor) (BLOCK24 protein)
          Length = 542

 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 39/92 (42%), Positives = 58/92 (63%)
 Frame = +1

Query: 13  INARNMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHC 192
           ++ +N  Y + VDVL+TV +  G VQ+I +F++N G+QA++++  +  A  AK AL G  
Sbjct: 171 LSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGAD 229

Query: 193 IYDGGYCKLHLSYSRHTDLNVKAHDERSRDYT 288
           IY  G C L + Y+R T LNV  +D  S DYT
Sbjct: 230 IY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT 260

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>HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 555

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 39/101 (38%), Positives = 62/101 (61%)
 Frame = +1

Query: 25  NMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHCIYDG 204
           N  Y++  DVL+T+ +  G VQ+I +F KN G+QA++++  + +A  AK +L G  IY  
Sbjct: 167 NPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-S 224

Query: 205 GYCKLHLSYSRHTDLNVKAHDERSRDYTVLDPSARVQAPPG 327
           G C L + Y++ T LNV  +D+ + DYT  +P+   Q  PG
Sbjct: 225 GCCTLKIEYAKPTRLNVFKNDQDTWDYT--NPNLSGQGDPG 263

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>HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 558

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 39/101 (38%), Positives = 62/101 (61%)
 Frame = +1

Query: 25  NMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGHCIYDG 204
           N  Y++  DVL+T+ +  G VQ+I +F KN G+QA++++  + +A  AK +L G  IY  
Sbjct: 170 NPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-S 227

Query: 205 GYCKLHLSYSRHTDLNVKAHDERSRDYTVLDPSARVQAPPG 327
           G C L + Y++ T LNV  +D+ + DYT  +P+   Q  PG
Sbjct: 228 GCCTLKIEYAKPTRLNVFKNDQDTWDYT--NPNLSGQGDPG 266

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>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F|
          Length = 941

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 13  INARNMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALEGH- 189
           I  RN+  A   + LH +FS FG ++ + +  K       I Y +    G A++A+ G  
Sbjct: 726 IFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKGIAYVEFEKPGEAQRAVAGRD 785

Query: 190 -CIYDG 204
            C++ G
Sbjct: 786 GCLFKG 791

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>CLK1_HUMAN (P49759) Dual specificity protein kinase CLK1 (EC 2.7.12.1)|
           (CDC-like kinase 1)
          Length = 484

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = -1

Query: 274 SSRHVPSHSDQYDESMTDEAYSNHHHICNVPPEXXXXXXXXXXLDTESEPAFHHSSRTLQ 95
           S R++  + + Y +   +  +    H                    +S+   HHS+   +
Sbjct: 69  SRRYIDEYRNDYTQGC-EPGHRQRDHESRYQNHSSKSSGRSGRSSYKSKHRIHHSTSHRR 127

Query: 94  SFGQ-HQKKRTQCVEHPHQQHTACSS 20
           S G+ H++KRT+ VE   + H  C S
Sbjct: 128 SHGKSHRRKRTRSVEDDEEGHLICQS 153

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>SAP49_SCHPO (O14102) Spliceosome-associated protein 49|
          Length = 335

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 5/169 (2%)
 Frame = +1

Query: 25  NMQYAVGVDVLHTVFSSFGAVQKIAMF--EKNGGMQA--LIQYPDITTAGVAKQALEGHC 192
           N+   V   VL+  FS+ G + K      ++NG  +    + Y    TA  A +A+    
Sbjct: 105 NLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQF 164

Query: 193 IYDGGYCKLHLSYSRHTDLNVKAH-DERSRDYTVLDPSARVQAPPGVVWQSTTPAGFYGS 369
           + +     + +SY+   +   + H D   R         +V   P    QST P GF  +
Sbjct: 165 LMNK---PITVSYAFKREGKGERHGDIAERKLAAAAKKNKVAVTP----QSTLPPGFSPA 217

Query: 370 SAGATSVGQVPTWNPNMQRGAFASASTSYPTQLLMANPGPHFPVIGSSS 516
           +   TS    P             A+TS P       P P+ P++G+++
Sbjct: 218 TPAPTSAANTPA----------TIAATSIP-------PVPNVPLVGATT 249

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>REC11_SCHPO (Q92380) Meiotic recombination protein rec11|
          Length = 923

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +3

Query: 438 KCINLVSYTIIDGKPRPALSSDRI 509
           KCIN+VS  I DGKP+  +S+ RI
Sbjct: 393 KCINIVSSCIFDGKPQNRISTMRI 416

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>T55BA_BRARE (Q32PR0) Transmembrane protein 55B-A (EC 3.1.3.-) (Type I|
           phosphatidylinositol 4,5-bisphosphate 4-phosphatase-A)
           (PtdIns-4,5-P2 4-Ptase I-A)
          Length = 270

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +1

Query: 355 GFYGSSAGATSVGQVPTWNPNMQRGAFASASTSYPTQLLMANPGPHFPVIGSSSGA 522
           G  GS  G  S G      PN  +      S++ P  LL  NP P+ P+    SG+
Sbjct: 16  GALGSGNGGVSPGAASLGAPNKPQSFPPFPSSTQPPVLLSENPPPYSPLTSPESGS 71

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>MRCKA_HUMAN (Q5VT25) Serine/threonine-protein kinase MRCK alpha (EC 2.7.11.1)|
            (CDC42-binding protein kinase alpha) (Myotonic dystrophy
            kinase-related CDC42-binding kinase alpha) (Myotonic
            dystrophy protein kinase-like alpha) (MRCK alpha)
            (DMPK-like alpha
          Length = 1732

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 302  VLGYKLHLE*YGKAPHLLVFMEAQQERPLSDKCQPGILTCSEGHLQVHQP 451
            V G+  H+    KAP        Q + PL    Q GI T  EGH+++ +P
Sbjct: 1045 VCGFSCHITCVNKAPTTCPVPPEQTKGPLGIDPQKGIGTAYEGHVRIPKP 1094

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>MRCKA_RAT (O54874) Serine/threonine-protein kinase MRCK alpha (EC 2.7.11.1)|
            (CDC42-binding protein kinase alpha) (Myotonic dystrophy
            kinase-related CDC42-binding kinase alpha) (Myotonic
            dystrophy protein kinase-like alpha) (MRCK alpha)
          Length = 1732

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 302  VLGYKLHLE*YGKAPHLLVFMEAQQERPLSDKCQPGILTCSEGHLQVHQP 451
            V G+  H+    KAP        Q + PL    Q G+ T  EGH+++ +P
Sbjct: 1045 VCGFSCHITCVNKAPTTCPVPPEQTKGPLGIDPQKGVGTAYEGHVRIPKP 1094

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>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +1

Query: 22  RNMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQ---ALIQYPDITTAGVAKQAL 180
           RN+ +    D L TVF+ FGAV ++ +  K  G       +Q+ ++  AG A + +
Sbjct: 118 RNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGM 173

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>EGR1_COTJA (O73692) Early growth response protein 1 (EGR-1) (Zinc finger|
           protein ZENK) (Fragment)
          Length = 194

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +1

Query: 235 RHTDLNVKAHDERSRDYTVLDPSARVQAPPGVVWQSTTPAGFYGSSAGATSVGQVPTWNP 414
           RHT ++++  D++      ++ +A V         +++P   Y SS   +    + T  P
Sbjct: 69  RHTKIHLRQKDKK------VEKAASVST-------TSSPVAAYSSSVATSYSSSIATTYP 115

Query: 415 NMQRGAFAS-ASTSYPTQLLMANPGP 489
           +  R  ++S AS+SYP+    A P P
Sbjct: 116 SPVRTVYSSPASSSYPSPAHTAFPSP 141

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>TCL1B_HUMAN (O95988) T-cell leukemia/lymphoma protein 1B (TCL1B oncogene)|
           (Syncytiotrophoblast-specific protein) (SYN-1)
          Length = 128

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 295 DPSARVQAPPGVVWQSTTPAGFYGSSAGATSVGQVPTWNPNMQRGAFASASTSY 456
           + S R+  PPG +W      G Y    G T V  V  +NP+ +  A AS  + Y
Sbjct: 4   EASVRLGVPPGRLWIQRP--GIYEDEEGRTWVTVVVRFNPSRREWARASQGSRY 55

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>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein|
          Length = 124

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +1

Query: 22  RNMQYAVGVDVLHTVFSSFGAVQKIAM-FEKNGGMQALIQYPDITTAGVAKQALEGHCIY 198
           RN+ + +  + ++ +F  +GA+++I +  +K     A + Y DI  A  A   L G   +
Sbjct: 24  RNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG---F 80

Query: 199 DGGYCKLHLSYSRHTDLNVKAHDERSRD 282
           +     L + Y +H  ++ K   ++S D
Sbjct: 81  NVANRYLIVLYYQHAKMSKKFDQKKSED 108

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>MIR1_MHV68 (O41933) Modulator of immune recognition 1 homolog (EC 6.3.2.-)|
           (MK3) (ORF K3)
          Length = 201

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -2

Query: 483 WVCHQ*LCRIRG*CTCK--CPSLHVR-IPGWHLSDRGRSC*ASIKTSRCGALPYYSRWSL 313
           W+CHQ    ++  C CK  C   H   + GW  + R ++C      + CG  PY  +W  
Sbjct: 9   WICHQPEGPLKRFCGCKGSCAVSHQDCLRGWLETSRRQTC------ALCGT-PYSMKWKT 61

Query: 312 YP 307
            P
Sbjct: 62  KP 63

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>MRCKB_HUMAN (Q9Y5S2) Serine/threonine-protein kinase MRCK beta (EC 2.7.11.1)|
            (CDC42-binding protein kinase beta) (Myotonic dystrophy
            kinase-related CDC42-binding kinase beta) (Myotonic
            dystrophy protein kinase-like beta) (MRCK beta)
            (DMPK-like beta)
          Length = 1711

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 302  VLGYKLHLE*YGKAPHLLVFMEAQQERPLSDKCQPGILTCSEGHLQVHQP 451
            V  +  H+     AP +      Q +RPL    Q GI T  +GH++V +P
Sbjct: 1058 VCSFACHVSCKDGAPQVCPIPPEQSKRPLGVDVQRGIGTAYKGHVKVPKP 1107

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>ETV2_MOUSE (P41163) ETS translocation variant 2 (Ets-related protein 71)|
          Length = 335

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
 Frame = +1

Query: 274 SRDYTVL-----DPSARVQAPPGVVWQSTTPAGFYGSSAG-----ATSVGQVPTWN 411
           SRD+T L     DP +     PG     T+P+ F G         ATS G VP+W+
Sbjct: 82  SRDWTDLGCNTSDPWSCASQTPGPAPPGTSPSPFVGFEGATGQNPATSAGGVPSWS 137

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>CATB_STRRE (O87864) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)|
          Length = 740

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
 Frame = +1

Query: 256 KAHDERSRDYTVLDPSARVQAPPGVVWQSTTPAGFYGSSAGATSV--GQVPTW--NPNMQ 423
           K H     D+   DP A      G+ W+ST     YG+  GA ++  G   TW   P   
Sbjct: 276 KTHGAGPADHVGADPEAASLEEQGLGWRST-----YGTGKGADAITSGLEVTWTSTPTQW 330

Query: 424 RGAFASASTSYPTQLLMANPGPH 492
              F      Y  +L  +  G H
Sbjct: 331 SNGFFKNLFEYEYELEQSPAGAH 353

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>SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 311

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 16/76 (21%), Positives = 25/76 (32%)
 Frame = -1

Query: 265 HVPSHSDQYDESMTDEAYSNHHHICNVPPEXXXXXXXXXXLDTESEPAFHHSSRTLQSFG 86
           H       +D     +   NHHH                    + +  FH   +  Q F 
Sbjct: 198 HHQQQQQFHDHQQQQQQLHNHHHQQQQQFHDYPQQQQQFHDHPQQKQQFHDRPQQQQQFH 257

Query: 85  QHQKKRTQCVEHPHQQ 38
            H +++ Q  +H HQQ
Sbjct: 258 DHHQQQQQFHDHHHQQ 273

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>EGR1_CHICK (O73691) Early growth response protein 1 (EGR-1) (Zinc finger|
           protein ZENK) (Fragment)
          Length = 194

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
 Frame = +1

Query: 235 RHTDLNVKAHDERSRDYTVLDPSARVQAPPGVVWQSTTPAGFYGSSAGATSVGQVPTWNP 414
           RHT ++++  D++      ++ +A V A       +++    Y SS   +    + T  P
Sbjct: 69  RHTKIHLRQKDKK------VEKAASVSA-------TSSSVAAYSSSVATSYSSSIATTYP 115

Query: 415 NMQRGAFAS-ASTSYPTQLLMANPGPHFPVIGSSSGA 522
           +  R  ++S AS+SYP+      P P      SS  A
Sbjct: 116 SSVRTVYSSPASSSYPSPAHTTFPSPSIATTYSSGTA 152

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>CECR5_MOUSE (Q91WM2) Cat eye syndrome critical region protein 5 homolog|
           precursor
          Length = 419

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 24/88 (27%), Positives = 34/88 (38%)
 Frame = +1

Query: 250 NVKAHDERSRDYTVLDPSARVQAPPGVVWQSTTPAGFYGSSAGATSVGQVPTWNPNMQRG 429
           NV   DE    +  LD     + P  +  +S  PA       G   +G+   W  N+Q  
Sbjct: 153 NVVTIDELRLAFPELDMVDLQRRPKTMRLRSDFPA-----IEGVLLLGEPVRWETNLQLI 207

Query: 430 AFASASTSYPTQLLMANPGPHFPVIGSS 513
                S  +P   L   P PH PV+ S+
Sbjct: 208 MDVLLSNGHPGTGLATAPYPHLPVLASN 235

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>ZCH14_HUMAN (Q8WYQ9) Zinc finger CCHC domain-containing protein 14 (BDG-29)|
          Length = 949

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 340 STTPAGFYGSSAGATSVGQVPTWNPN 417
           S   + FY SS G  S G +P  NPN
Sbjct: 737 SVPESSFYSSSGGGGSTGNIPASNPN 762

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>CX017_MOUSE (Q8C3F2) Protein CXorf17 homolog|
          Length = 1091

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 364 GSSAGATSVGQVPTW-NPNMQRGAFASASTSYPTQLLMANPGPHFPVIGSSS 516
           GS     +V Q P W +PN  RGA+   + +  ++  +A   PH P + S S
Sbjct: 532 GSEQITEAVQQQPGWEDPNGDRGAWGQPADAGVSETTVAESEPHIPSLLSMS 583

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>UBE3C_MOUSE (Q80U95) Ubiquitin-protein ligase E3C (EC 6.3.2.-)|
          Length = 1083

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 152 QQQELLNKLWRDIAYMMVVT-VSFICHTLVI 241
           Q   LLN +WRD A   V T ++ ICHTL++
Sbjct: 404 QTNTLLNLVWRDSASEEVFTRMASICHTLMV 434

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>UBE3C_HUMAN (Q15386) Ubiquitin-protein ligase E3C (EC 6.3.2.-)|
          Length = 1083

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 152 QQQELLNKLWRDIAYMMV-VTVSFICHTLVI 241
           Q   LLN +WRD A   V  T++ +CHTL++
Sbjct: 404 QTNTLLNLVWRDSASEEVFTTMASVCHTLMV 434


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.131    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,624,024
Number of Sequences: 219361
Number of extensions: 1970807
Number of successful extensions: 5995
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 5696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5969
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result