ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags37g21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip ... 91 1e-18
2CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chiti... 89 4e-18
3CYB_SCHJP (Q8HMZ7) Cytochrome b 30 1.7
4IRX1_HUMAN (P78414) Iroquois-class homeodomain protein IRX-1 (Ir... 29 2.9
5RUAP_SOYBN (P39657) RuBisCO-associated protein 28 4.9
6SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains prote... 28 8.4
7IRX1_MOUSE (P81068) Iroquois-class homeodomain protein IRX-1 (Ir... 28 8.4

>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb|
           chitinase-1) (TBC-1)
          Length = 314

 Score = 90.5 bits (223), Expect = 1e-18
 Identities = 41/74 (55%), Positives = 50/74 (67%)
 Frame = +1

Query: 1   EYIGAQFTGVRFTDVPVNTGVSFHFILAFAIDYLASQQSKPTPTNGVFRPXWDTGNLTPX 180
           EYIG+QF  V+F+DVP+N  V FHFILAFAIDY +   S PTPTNG F+P WDT NL+P 
Sbjct: 31  EYIGSQFNDVKFSDVPINPDVDFHFILAFAIDYTSG--SSPTPTNGNFKPFWDTNNLSPS 88

Query: 181 XXXXXXXXHPNLSI 222
                   H N+ +
Sbjct: 89  QVAAVKRTHSNVKV 102



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>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)|
          Length = 275

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 41/74 (55%), Positives = 49/74 (66%)
 Frame = +1

Query: 1   EYIGAQFTGVRFTDVPVNTGVSFHFILAFAIDYLASQQSKPTPTNGVFRPXWDTGNLTPX 180
           EYIGAQF  V+F+DVP+N  V FHFILAFAIDY +   S PTPTNG F P WDT NL+P 
Sbjct: 5   EYIGAQFNDVKFSDVPINPNVDFHFILAFAIDYTSG--SSPTPTNGNFNPFWDTNNLSPS 62

Query: 181 XXXXXXXXHPNLSI 222
                   + N+ +
Sbjct: 63  QVAAIKRTYNNVKV 76



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>CYB_SCHJP (Q8HMZ7) Cytochrome b|
          Length = 389

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +1

Query: 25  GVRFTDVPVNTGVSFHFILAFAIDYLASQQSKPTPTNGVFRPXWDTGNL 171
           G    +  +N   S H++L F I  LA        TNG   P   TGNL
Sbjct: 168 GFNVNNATLNRFFSLHYLLPFIISALAIMHMIALHTNGSSNPLGITGNL 216



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>IRX1_HUMAN (P78414) Iroquois-class homeodomain protein IRX-1 (Iroquois|
           homeobox protein 1) (Homeodomain protein IRXA1)
          Length = 480

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 111 AVQAHADQRRLQAXLGHGQPHPCRHGRHQSGPP*PE 218
           A  A      +++ LG G PH   HG H   PP P+
Sbjct: 378 AFLAQGSLLNMRSFLGVGAPHAAPHGPHLPAPPPPQ 413



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>RUAP_SOYBN (P39657) RuBisCO-associated protein|
          Length = 283

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 43  VPVNTGVSFHFILAFAIDYLASQQSKPTPTNGVFRPXWDTGNLTP 177
           +P N    F   L+ A DY  +       TNG F P WDT  +TP
Sbjct: 22  IPENI-TEFQVTLSLARDYDGNNS-----TNGKFIPYWDTEKVTP 60



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>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 147  AXLGHGQPHPCRHGRHQSGPP*PEHH 224
            A L     HP  H  H + PP P HH
Sbjct: 999  AALPPAHHHPPHHHHHHAPPPQPHHH 1024



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>IRX1_MOUSE (P81068) Iroquois-class homeodomain protein IRX-1 (Iroquois|
           homeobox protein 1) (Homeodomain protein IRXA1)
          Length = 480

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 111 AVQAHADQRRLQAXLGHGQPHPCRHGRHQSGPP*PE 218
           A  A      +++ LG   PH   HG H + PP P+
Sbjct: 378 AFLAQGSLLNMRSFLGVSAPHAAPHGPHLTAPPPPQ 413


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,679,190
Number of Sequences: 219361
Number of extensions: 319772
Number of successful extensions: 1103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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