ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags37g15 |
|---|---|
| Clone Library Name | barley_pub |
>RBCMT_PEA (Q43088) Ribulose-1,5 bisphosphate carboxylase/oxygenase large| subunit N-methyltransferase, chloroplast precursor (EC 2.1.1.127) ([Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisco LSMT) (rbcMT) Length = 489 Score = 44.7 bits (104), Expect = 1e-04 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 31/160 (19%) Frame = +1 Query: 37 QVPEELW-------AMRLG-------------LRLLQERTKFDSFWWPYIANLPETFTVP 156 QVP+ LW A +G L L++ER++ DS W Y LP+ Sbjct: 98 QVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDST 157 Query: 157 IFFPGEDIKNLQYAPLL-------HQINKRCRFLLEFEKEV---KQKLGTVPSGDHPFCG 306 I++ E+++ LQ + LL + C L+ E+E+ ++L P Sbjct: 158 IYWSEEELQELQGSQLLKTTVSVKEYVKNEC---LKLEQEIILPNKRLFPDP-------- 206 Query: 307 QDVHSSSLGWAMSAASSRAF-RLHGEIPMLLPLVDMCNHS 423 V WA SRAF RL E +++P+ D+ NHS Sbjct: 207 --VTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHS 244
>RBCMT_ARATH (Q9XI84) Probable ribulose-1,5 bisphosphate carboxylase/oxygenase| large subunit N-methyltransferase, chloroplast precursor (EC 2.1.1.127) ([Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisco LS Length = 482 Score = 42.4 bits (98), Expect = 6e-04 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Frame = +1 Query: 67 LGLRLLQERTKFDSFWWPYIANLPETFTVPIFFPGEDIKNLQYAPLLHQINKRCRFL--- 237 + L L++E+ + +S W Y+ LP++ +F+ E++ L+ LL ++ Sbjct: 123 VALFLIREKYEEESSWRVYLDMLPQSTDSTVFWSEEELAELKGTQLLSTTLGVKEYVENE 182 Query: 238 -LEFEKEVKQKLGTVPSGDHPFCGQDVHSSSLGWAMSAASSRAF-RLHGEIPMLLPLVDM 411 L+ E+E+ +P+ D + WA SRAF RL G+ +L+PL D+ Sbjct: 183 FLKLEQEI-----LLPNKD--LFSSRITLDDFIWAFGILKSRAFSRLRGQNLVLIPLADL 235 Query: 412 CNHS 423 NH+ Sbjct: 236 INHN 239
>RBCMT_TOBAC (P94026) Ribulose-1,5 bisphosphate carboxylase/oxygenase large| subunit N-methyltransferase, chloroplast precursor (EC 2.1.1.127) ([Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisco LSMT) (rbcM Length = 491 Score = 41.2 bits (95), Expect = 0.001 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 1/130 (0%) Frame = +1 Query: 67 LGLRLLQERTKFDSFWWPYIANLPETFTVPIFFPGEDIKNLQYAPLLHQINKRCRFLLEF 246 + L LL+E+ + DS W Y+ LP++ I++ E++ +Q LL ++ Sbjct: 131 VALFLLREKWRDDSKWKYYMDVLPKSTDSTIYWSEEELSEIQGTQLLSTTMSVKDYVQNE 190 Query: 247 EKEVKQKLGTVPSGDHPFCGQDVHSSSLGWAMSAASSRAF-RLHGEIPMLLPLVDMCNHS 423 ++V++++ PF + WA SRAF RL + +L+P D+ NH Sbjct: 191 FQKVEEEVILRNKQLFPF---PITLDDFFWAFGILRSRAFSRLRNQNLILVPFADLTNH- 246 Query: 424 FSPNARIVQD 453 NAR+ + Sbjct: 247 ---NARVTTE 253
>STS3_ARATH (P92976) Strictosidine synthase 3 precursor (EC 4.3.3.2) (SS-3)| Length = 329 Score = 32.0 bits (71), Expect = 0.85 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%) Frame = -2 Query: 260 FTSFSNSRRKRHLLFIWWRRGAYCKFFMSSPGKKIGTVKVSGRFAIYG--HQNESNFVL- 90 FTSFS++ R +L + + KFF P KK+ TV + G G ++ +FVL Sbjct: 161 FTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLV 220 Query: 89 ---S*SNLKPSLIAHSSSGT 39 + SN+K I S +GT Sbjct: 221 GQFTKSNIKRYWIKGSKAGT 240
>PYRG_CHLTE (P59040) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 565 Score = 31.6 bits (70), Expect = 1.1 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 7/87 (8%) Frame = +1 Query: 211 QINKRCRF----LLEFEKEVKQKLGTVPSGDHPFC---GQDVHSSSLGWAMSAASSRAFR 369 + NKR RF L+E +K+VK+K GT+ G +P G H + ++ + Sbjct: 414 EFNKRTRFPVIDLMEHQKKVKEKGGTMRLGSYPCILKEGSKAHELYGKFLINERHRHRYE 473 Query: 370 LHGEIPMLLPLVDMCNHSFSPNARIVQ 450 + + L M SPN +V+ Sbjct: 474 FNNQFRKLFEEKGMIFSGTSPNGDLVE 500
>SETD4_HUMAN (Q9NVD3) SET domain-containing protein 4| Length = 440 Score = 30.8 bits (68), Expect = 1.9 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 14/120 (11%) Frame = +1 Query: 106 SFWWPYIANLPETFTVPIFFPGEDIKNLQYAPLLHQINKRCRFLLEFEKEVKQKLGTVPS 285 S W PY+ LP+ +T P+ E + NL L + ++ + EF + ++ Sbjct: 124 SLWKPYLEILPKAYTCPVCLEPE-VVNLLPKSLKAKAEEQRAHVQEFFASSRDFFSSL-- 180 Query: 286 GDHPFCGQDVHS----SSLGWAMSAASSRAFRL----------HGEIPMLLPLVDMCNHS 423 P + V S S+L WA ++RA L + L P +D+ NHS Sbjct: 181 --QPLFAEAVDSIFSYSALLWAWCTVNTRAVYLRPRQRECLSAEPDTCALAPYLDLLNHS 238
>ASHR1_ARATH (Q7XJS0) Histone-lysine N-methyltransferase ASHR1 (EC 2.1.1.43)| (ASH1-related protein 1) (Protein SET DOMAIN GROUP 37) Length = 480 Score = 30.8 bits (68), Expect = 1.9 Identities = 21/87 (24%), Positives = 33/87 (37%) Frame = +1 Query: 187 LQYAPLLHQINKRCRFLLEFEKEVKQKLGTVPSGDHPFCGQDVHSSSLGWAMSAASSRAF 366 L YA + + +N +F +E+ + H C ++ +G Sbjct: 156 LLYAQMANLVNLILQFPSVDLREIAENFSKFSCNAHSICDSELRPQGIG----------- 204 Query: 367 RLHGEIPMLLPLVDMCNHSFSPNARIV 447 L PLV + NHS SPNA +V Sbjct: 205 --------LFPLVSIINHSCSPNAVLV 223
>PMPF_CHLMU (Q9PL46) Probable outer membrane protein pmpF precursor| (Polymorphic membrane protein F) Length = 1025 Score = 30.8 bits (68), Expect = 1.9 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 7/74 (9%) Frame = +3 Query: 15 STDAARRPSTRGTVGNETGLE-----VASREDKIRFVLVAIYREPAR--DLYRTNLLSRG 173 ST A+ PS R + G T L V + + + +PAR DL NL+S G Sbjct: 679 STTTAKIPSIRASTGGTTPLATTDVTVTRHSLVVSWTPIGYIADPARRGDLIANNLVSSG 738 Query: 174 RHKELAICSSPPPD 215 R+ L + S P D Sbjct: 739 RNTTLYLRSLLPDD 752
>EVX1_MOUSE (P23683) Homeobox even-skipped homolog protein 1 (EVX-1)| Length = 416 Score = 30.0 bits (66), Expect = 3.2 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 6/81 (7%) Frame = +3 Query: 18 TDAARRPSTRGTVGNE--TGLEVASREDKIRFVLVAIYREPA----RDLYRTNLLSRGRH 179 T + P + G G G S D++R A RE ++ YR N +SR R Sbjct: 154 TSGSEAPKSNGGSGGSGSQGTLACSASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRR 213 Query: 180 KELAICSSPPPDK*KMSFPSR 242 ELA + P K+ F +R Sbjct: 214 CELAAALNLPETTIKVWFQNR 234
>PALF_MAGGR (Q52FM1) pH-response regulator protein palF/RIM8| Length = 770 Score = 29.6 bits (65), Expect = 4.2 Identities = 20/63 (31%), Positives = 28/63 (44%) Frame = +3 Query: 21 DAARRPSTRGTVGNETGLEVASREDKIRFVLVAIYREPARDLYRTNLLSRGRHKELAICS 200 DAA PS+ VGN G+ A D++ A+ + L R RH+ L S Sbjct: 636 DAAAGPSSAPIVGNSNGVATAPTLDEVESGEAAVGNSEDK-------LERERHRLLQEAS 688 Query: 201 SPP 209 +PP Sbjct: 689 APP 691
>EVX1_HUMAN (P49640) Homeobox even-skipped homolog protein 1 (EVX-1)| Length = 407 Score = 29.3 bits (64), Expect = 5.5 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Frame = +3 Query: 57 GNETGLEVASREDKIRFVLVAIYREPA----RDLYRTNLLSRGRHKELAICSSPPPDK*K 224 G G S D++R A RE ++ YR N +SR R ELA + P K Sbjct: 169 GGSQGTLACSASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIK 228 Query: 225 MSFPSR 242 + F +R Sbjct: 229 VWFQNR 234
>CDR1_CANAL (P43071) Multidrug resistance protein CDR1| Length = 1501 Score = 28.9 bits (63), Expect = 7.2 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = -2 Query: 269 SFCFTSFSNSRRKRHLLFIWWRRGAYCKFFMSSPGKKIGTVKVS 138 +F F N RR F +W +C F MS + IG V S Sbjct: 609 NFVFYFMVNFRRNPGRFFFYWLMCIWCTFVMSHLFRSIGAVSTS 652
>C90C1_ARATH (Q9M066) Cytochrome P450 90C1 (EC 1.14.-.-) (ROTUNDIFOLIA3)| Length = 524 Score = 28.9 bits (63), Expect = 7.2 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = -3 Query: 310 LVHKKDDLLRAQCQASVLPLSQTREGNDIFYLSGGGEEHIASSLCLPLE 164 LVH +D++ + + V L T G D+ L EE I +C+P++ Sbjct: 203 LVHVQDEIKKMTFEILVKVLMSTSPGEDMNILKLEFEEFIKGLICIPIK 251
>GLGB_STRA5 (Q8E081) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 622 Score = 28.5 bits (62), Expect = 9.4 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 9/64 (14%) Frame = -1 Query: 168 WKEDWYGKGLW--QVRDIWPP-------KRIEFCPLLKQPQAQSHCPQFLGYLVGELHQY 16 WK+D +G + Q++D P +EF PL+ P S Q +GY E H Y Sbjct: 149 WKKDDFGHPMTFSQLKDYLIPYLVEMNYTHVEFMPLMAHPLDMSWGYQLMGYFAFE-HTY 207 Query: 15 CVPQ 4 P+ Sbjct: 208 GTPE 211
>GLGB_STRA3 (Q8E5V8) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 622 Score = 28.5 bits (62), Expect = 9.4 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 9/64 (14%) Frame = -1 Query: 168 WKEDWYGKGLW--QVRDIWPP-------KRIEFCPLLKQPQAQSHCPQFLGYLVGELHQY 16 WK+D +G + Q++D P +EF PL+ P S Q +GY E H Y Sbjct: 149 WKKDDFGHPMTFSQLKDYLIPYLVEMNYTHVEFMPLMAHPLDMSWGYQLMGYFAFE-HTY 207 Query: 15 CVPQ 4 P+ Sbjct: 208 GTPE 211
>UBIA_ECOLI (P0AGK1) 4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.-) (4-HB| polyprenyltransferase) Length = 290 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +2 Query: 77 GCFKRGQNSIRFGGHISRTCQRPLP 151 GC +F GH+ RT RPLP Sbjct: 63 GCVVNDYADRKFDGHVKRTANRPLP 87
>UBIA_ECOL6 (P0AGK2) 4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.-) (4-HB| polyprenyltransferase) Length = 290 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +2 Query: 77 GCFKRGQNSIRFGGHISRTCQRPLP 151 GC +F GH+ RT RPLP Sbjct: 63 GCVVNDYADRKFDGHVKRTANRPLP 87
>UBIA_ECO57 (P0AGK3) 4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.-) (4-HB| polyprenyltransferase) Length = 290 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +2 Query: 77 GCFKRGQNSIRFGGHISRTCQRPLP 151 GC +F GH+ RT RPLP Sbjct: 63 GCVVNDYADRKFDGHVKRTANRPLP 87 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,530,948 Number of Sequences: 219361 Number of extensions: 1741873 Number of successful extensions: 5312 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5310 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
