| Clone Name | bags37g11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469230.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1647 Score = 557 bits (281), Expect = e-155 Identities = 418/465 (89%) Strand = Plus / Plus Query: 2 cattctagttggtgatgagcttgtcattgatggtggaatggcgacatttgaagttacaga 61 |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| || Sbjct: 525 cattctagttggtgatgagcttgtaattgatggaggaatggcaacatttgaagttattga 584 Query: 62 gaagatcgggggtgatctgcgctgtaagtgcacagacccaggtttgcttcttcctcgagc 121 |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 585 gaaggtcggaaatgatttgcgctgtaagtgcacagacccaggtttgcttcttcctcgagc 644 Query: 122 caagttgtcattctggagggacggaaaattagttgaaaggaactttgggcttcctacatt 181 ||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 645 caaactgtcattctggaggaatggaaaattagttgaaaggaactttgggcttcctacatt 704 Query: 182 atcgacaaaggattgggctgacattgaatttggcataactgaaggagtcgattgtattgc 241 || |||||||||||||||||||||||||||| ||| |||||||||| ||||| || || Sbjct: 705 gtcagcaaaggattgggctgacattgaatttgggatagctgaaggagttgattgcatcgc 764 Query: 242 tctttcatttgtaaaggatgctaatgacattaantccctgaaaacttacctctccagaag 301 ||||||||||||||| |||||||||||||| || | || || |||||||||||||||| Sbjct: 765 tctttcatttgtaaaagatgctaatgacatcaagtatctcaagacttacctctccagaaa 824 Query: 302 atcattagaacacattaagatattcgcaaagatcgagagtctggaatctctcaagaacct 361 ||||||||||||||| || |||||||| ||| | |||||||| ||||| ||||||||||| Sbjct: 825 atcattagaacacatcaaaatattcgcgaaggttgagagtcttgaatcactcaagaacct 884 Query: 362 taaagacatcatanaggcatcggatggagtcatggttgcgcgtggtgatcttggagttca 421 ||||||||||||| ||||||| |||||||| ||||| || |||||||||||||||||||| Sbjct: 885 taaagacatcatagaggcatctgatggagttatggtagcacgtggtgatcttggagttca 944 Query: 422 ggttcctctanaacaaatcccanccatccaagaggcgattgttga 466 | ||||| || ||||||||||| ||||||||||||| |||||||| Sbjct: 945 gattcctttagaacaaatcccagccatccaagaggcaattgttga 989
>dbj|AK109881.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-C12, full insert sequence Length = 1806 Score = 557 bits (281), Expect = e-155 Identities = 418/465 (89%) Strand = Plus / Plus Query: 2 cattctagttggtgatgagcttgtcattgatggtggaatggcgacatttgaagttacaga 61 |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| || Sbjct: 599 cattctagttggtgatgagcttgtaattgatggaggaatggcaacatttgaagttattga 658 Query: 62 gaagatcgggggtgatctgcgctgtaagtgcacagacccaggtttgcttcttcctcgagc 121 |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 659 gaaggtcggaaatgatttgcgctgtaagtgcacagacccaggtttgcttcttcctcgagc 718 Query: 122 caagttgtcattctggagggacggaaaattagttgaaaggaactttgggcttcctacatt 181 ||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 719 caaactgtcattctggaggaatggaaaattagttgaaaggaactttgggcttcctacatt 778 Query: 182 atcgacaaaggattgggctgacattgaatttggcataactgaaggagtcgattgtattgc 241 || |||||||||||||||||||||||||||| ||| |||||||||| ||||| || || Sbjct: 779 gtcagcaaaggattgggctgacattgaatttgggatagctgaaggagttgattgcatcgc 838 Query: 242 tctttcatttgtaaaggatgctaatgacattaantccctgaaaacttacctctccagaag 301 ||||||||||||||| |||||||||||||| || | || || |||||||||||||||| Sbjct: 839 tctttcatttgtaaaagatgctaatgacatcaagtatctcaagacttacctctccagaaa 898 Query: 302 atcattagaacacattaagatattcgcaaagatcgagagtctggaatctctcaagaacct 361 ||||||||||||||| || |||||||| ||| | |||||||| ||||| ||||||||||| Sbjct: 899 atcattagaacacatcaaaatattcgcgaaggttgagagtcttgaatcactcaagaacct 958 Query: 362 taaagacatcatanaggcatcggatggagtcatggttgcgcgtggtgatcttggagttca 421 ||||||||||||| ||||||| |||||||| ||||| || |||||||||||||||||||| Sbjct: 959 taaagacatcatagaggcatctgatggagttatggtagcacgtggtgatcttggagttca 1018 Query: 422 ggttcctctanaacaaatcccanccatccaagaggcgattgttga 466 | ||||| || ||||||||||| ||||||||||||| |||||||| Sbjct: 1019 gattcctttagaacaaatcccagccatccaagaggcaattgttga 1063
>dbj|AK103388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127I24, full insert sequence Length = 1883 Score = 549 bits (277), Expect = e-153 Identities = 417/465 (89%) Strand = Plus / Plus Query: 2 cattctagttggtgatgagcttgtcattgatggtggaatggcgacatttgaagttacaga 61 |||||||||||||||||||||||| |||||||| |||||||| || |||||||||| || Sbjct: 600 cattctagttggtgatgagcttgtaattgatggaggaatggcaacgtttgaagttattga 659 Query: 62 gaagatcgggggtgatctgcgctgtaagtgcacagacccaggtttgcttcttcctcgagc 121 |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 660 gaaggtcggaaatgatttgcgctgtaagtgcacagacccaggtttgcttcttcctcgagc 719 Query: 122 caagttgtcattctggagggacggaaaattagttgaaaggaactttgggcttcctacatt 181 ||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 720 caaactgtcattctggaggaatggaaaattagttgaaaggaactttgggcttcctacatt 779 Query: 182 atcgacaaaggattgggctgacattgaatttggcataactgaaggagtcgattgtattgc 241 || |||||||||||||||||||||||||||| ||| |||||||||| ||||| || || Sbjct: 780 gtcagcaaaggattgggctgacattgaatttgggatagctgaaggagttgattgcatcgc 839 Query: 242 tctttcatttgtaaaggatgctaatgacattaantccctgaaaacttacctctccagaag 301 ||||||||||||||| |||||||||||||| || | || || |||||||||||||||| Sbjct: 840 tctttcatttgtaaaagatgctaatgacatcaagtatctcaagacttacctctccagaaa 899 Query: 302 atcattagaacacattaagatattcgcaaagatcgagagtctggaatctctcaagaacct 361 ||||||||||||||| || |||||||| ||| | |||||||| ||||| ||||||||||| Sbjct: 900 atcattagaacacatcaaaatattcgcgaaggttgagagtcttgaatcactcaagaacct 959 Query: 362 taaagacatcatanaggcatcggatggagtcatggttgcgcgtggtgatcttggagttca 421 ||||||||||||| ||||||| |||||||| ||||| || |||||||||||||||||||| Sbjct: 960 taaagacatcatagaggcatctgatggagttatggtggcacgtggtgatcttggagttca 1019 Query: 422 ggttcctctanaacaaatcccanccatccaagaggcgattgttga 466 | ||||| || ||||||||||| ||||||||||||| |||||||| Sbjct: 1020 gattcctttagaacaaatcccagccatccaagaggcaattgttga 1064
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 246 bits (124), Expect = 6e-62 Identities = 166/180 (92%) Strand = Plus / Minus Query: 2 cattctagttggtgatgagcttgtcattgatggtggaatggcgacatttgaagttacaga 61 |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| || Sbjct: 26237740 cattctagttggtgatgagcttgtaattgatggaggaatggcaacatttgaagttattga 26237681 Query: 62 gaagatcgggggtgatctgcgctgtaagtgcacagacccaggtttgcttcttcctcgagc 121 |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26237680 gaaggtcggaaatgatttgcgctgtaagtgcacagacccaggtttgcttcttcctcgagc 26237621 Query: 122 caagttgtcattctggagggacggaaaattagttgaaaggaactttgggcttcctacatt 181 ||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 26237620 caaactgtcattctggaggaatggaaaattagttgaaaggaactttgggcttcctacatt 26237561 Score = 180 bits (91), Expect = 3e-42 Identities = 139/156 (89%) Strand = Plus / Minus Query: 311 acacattaagatattcgcaaagatcgagagtctggaatctctcaagaaccttaaagacat 370 |||||| || |||||||| ||| | |||||||| ||||| |||||||||||||||||||| Sbjct: 26236599 acacatcaaaatattcgcgaaggttgagagtcttgaatcactcaagaaccttaaagacat 26236540 Query: 371 catanaggcatcggatggagtcatggttgcgcgtggtgatcttggagttcaggttcctct 430 |||| ||||||| |||||||| ||||| || ||||||||||||||||||||| ||||| | Sbjct: 26236539 catagaggcatctgatggagttatggtagcacgtggtgatcttggagttcagattccttt 26236480 Query: 431 anaacaaatcccanccatccaagaggcgattgttga 466 | ||||||||||| ||||||||||||| |||||||| Sbjct: 26236479 agaacaaatcccagccatccaagaggcaattgttga 26236444 Score = 139 bits (70), Expect = 1e-29 Identities = 108/121 (89%) Strand = Plus / Minus Query: 190 aggattgggctgacattgaatttggcataactgaaggagtcgattgtattgctctttcat 249 ||||||||||||||||||||||||| ||| |||||||||| ||||| || |||||||||| Sbjct: 26237200 aggattgggctgacattgaatttgggatagctgaaggagttgattgcatcgctctttcat 26237141 Query: 250 ttgtaaaggatgctaatgacattaantccctgaaaacttacctctccagaagatcattag 309 ||||||| |||||||||||||| || | || || |||||||||||||||| |||||||| Sbjct: 26237140 ttgtaaaagatgctaatgacatcaagtatctcaagacttacctctccagaaaatcattag 26237081 Query: 310 a 310 | Sbjct: 26237080 a 26237080
>gb|AC116369.5| Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence Length = 122939 Score = 246 bits (124), Expect = 6e-62 Identities = 166/180 (92%) Strand = Plus / Minus Query: 2 cattctagttggtgatgagcttgtcattgatggtggaatggcgacatttgaagttacaga 61 |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| || Sbjct: 67199 cattctagttggtgatgagcttgtaattgatggaggaatggcaacatttgaagttattga 67140 Query: 62 gaagatcgggggtgatctgcgctgtaagtgcacagacccaggtttgcttcttcctcgagc 121 |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67139 gaaggtcggaaatgatttgcgctgtaagtgcacagacccaggtttgcttcttcctcgagc 67080 Query: 122 caagttgtcattctggagggacggaaaattagttgaaaggaactttgggcttcctacatt 181 ||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 67079 caaactgtcattctggaggaatggaaaattagttgaaaggaactttgggcttcctacatt 67020 Score = 180 bits (91), Expect = 3e-42 Identities = 139/156 (89%) Strand = Plus / Minus Query: 311 acacattaagatattcgcaaagatcgagagtctggaatctctcaagaaccttaaagacat 370 |||||| || |||||||| ||| | |||||||| ||||| |||||||||||||||||||| Sbjct: 66058 acacatcaaaatattcgcgaaggttgagagtcttgaatcactcaagaaccttaaagacat 65999 Query: 371 catanaggcatcggatggagtcatggttgcgcgtggtgatcttggagttcaggttcctct 430 |||| ||||||| |||||||| ||||| || ||||||||||||||||||||| ||||| | Sbjct: 65998 catagaggcatctgatggagttatggtagcacgtggtgatcttggagttcagattccttt 65939 Query: 431 anaacaaatcccanccatccaagaggcgattgttga 466 | ||||||||||| ||||||||||||| |||||||| Sbjct: 65938 agaacaaatcccagccatccaagaggcaattgttga 65903 Score = 139 bits (70), Expect = 1e-29 Identities = 108/121 (89%) Strand = Plus / Minus Query: 190 aggattgggctgacattgaatttggcataactgaaggagtcgattgtattgctctttcat 249 ||||||||||||||||||||||||| ||| |||||||||| ||||| || |||||||||| Sbjct: 66659 aggattgggctgacattgaatttgggatagctgaaggagttgattgcatcgctctttcat 66600 Query: 250 ttgtaaaggatgctaatgacattaantccctgaaaacttacctctccagaagatcattag 309 ||||||| |||||||||||||| || | || || |||||||||||||||| |||||||| Sbjct: 66599 ttgtaaaagatgctaatgacatcaagtatctcaagacttacctctccagaaaatcattag 66540 Query: 310 a 310 | Sbjct: 66539 a 66539
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 246 bits (124), Expect = 6e-62 Identities = 166/180 (92%) Strand = Plus / Minus Query: 2 cattctagttggtgatgagcttgtcattgatggtggaatggcgacatttgaagttacaga 61 |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| || Sbjct: 26329049 cattctagttggtgatgagcttgtaattgatggaggaatggcaacatttgaagttattga 26328990 Query: 62 gaagatcgggggtgatctgcgctgtaagtgcacagacccaggtttgcttcttcctcgagc 121 |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26328989 gaaggtcggaaatgatttgcgctgtaagtgcacagacccaggtttgcttcttcctcgagc 26328930 Query: 122 caagttgtcattctggagggacggaaaattagttgaaaggaactttgggcttcctacatt 181 ||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 26328929 caaactgtcattctggaggaatggaaaattagttgaaaggaactttgggcttcctacatt 26328870 Score = 180 bits (91), Expect = 3e-42 Identities = 139/156 (89%) Strand = Plus / Minus Query: 311 acacattaagatattcgcaaagatcgagagtctggaatctctcaagaaccttaaagacat 370 |||||| || |||||||| ||| | |||||||| ||||| |||||||||||||||||||| Sbjct: 26327908 acacatcaaaatattcgcgaaggttgagagtcttgaatcactcaagaaccttaaagacat 26327849 Query: 371 catanaggcatcggatggagtcatggttgcgcgtggtgatcttggagttcaggttcctct 430 |||| ||||||| |||||||| ||||| || ||||||||||||||||||||| ||||| | Sbjct: 26327848 catagaggcatctgatggagttatggtagcacgtggtgatcttggagttcagattccttt 26327789 Query: 431 anaacaaatcccanccatccaagaggcgattgttga 466 | ||||||||||| ||||||||||||| |||||||| Sbjct: 26327788 agaacaaatcccagccatccaagaggcaattgttga 26327753 Score = 139 bits (70), Expect = 1e-29 Identities = 108/121 (89%) Strand = Plus / Minus Query: 190 aggattgggctgacattgaatttggcataactgaaggagtcgattgtattgctctttcat 249 ||||||||||||||||||||||||| ||| |||||||||| ||||| || |||||||||| Sbjct: 26328509 aggattgggctgacattgaatttgggatagctgaaggagttgattgcatcgctctttcat 26328450 Query: 250 ttgtaaaggatgctaatgacattaantccctgaaaacttacctctccagaagatcattag 309 ||||||| |||||||||||||| || | || || |||||||||||||||| |||||||| Sbjct: 26328449 ttgtaaaagatgctaatgacatcaagtatctcaagacttacctctccagaaaatcattag 26328390 Query: 310 a 310 | Sbjct: 26328389 a 26328389
>gb|AY110008.1| Zea mays CL3258_1 mRNA sequence Length = 1061 Score = 83.8 bits (42), Expect = 5e-13 Identities = 93/111 (83%) Strand = Plus / Minus Query: 386 tggagtcatggttgcgcgtggtgatcttggagttcaggttcctctanaacaaatcccanc 445 |||||| ||||| || || || ||||||||||||||| ||||||| |||| |||||| | Sbjct: 904 tggagttatggtagcacgaggggatcttggagttcagattcctcttgaacagatcccagc 845 Query: 446 catccaagaggcgattgttgaattatgtanaaacctgaacaagcctgtgat 496 ||| ||||| | |||||| || |||||| | ||||||||||||||||||| Sbjct: 844 cattcaagaatcaattgttaaactatgtagacacctgaacaagcctgtgat 794 Score = 79.8 bits (40), Expect = 8e-12 Identities = 99/119 (83%) Strand = Plus / Minus Query: 231 gattgtattgctctttcatttgtaaaggatgctaatgacattaantccctgaaaacttac 290 ||||| |||||||| ||||||||||| ||||||||||| || || ||||| ||||| Sbjct: 1059 gattgcattgctctatcatttgtaaatgatgctaatgatataaagcagttgaaagcttac 1000 Query: 291 ctctccagaagatcattagaacacattaagatattcgcaaagatcgagagtctggaatc 349 ||||| |||||||| ||||| ||||| || |||| |||||||| |||||||| ||||| Sbjct: 999 ctctctagaagatcgttagagcacatcaaagtatttgcaaagattgagagtctagaatc 941
>gb|BT013718.1| Lycopersicon esculentum clone 132564F, mRNA sequence Length = 2032 Score = 60.0 bits (30), Expect = 7e-06 Identities = 96/118 (81%) Strand = Plus / Plus Query: 11 tggtgatgagcttgtcattgatggtggaatggcgacatttgaagttacagagaagatcgg 70 ||||||||| |||||||||| || |||||||| || |||||||||| |||||| | || Sbjct: 781 tggtgatgaaattgtcattgacggaggaatggcaacttttgaagttatagagaaagttgg 840 Query: 71 gggtgatctgcgctgtaagtgcacagacccaggtttgcttcttcctcgagccaagttg 128 || | ||||||| |||||||||||||| ||| | ||||| ||| |||| |||||| Sbjct: 841 taatggtttgcgctgcaagtgcacagaccccggtctacttctgcctagagctaagttg 898 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Plus Query: 180 ttatcgacaaaggattgggctgacattgaatttggcataactgaaggagtcgattgtatt 239 ||||| |||||||||||| | ||||||| |||||| ||| |||||| |||||| ||| Sbjct: 950 ttatcaacaaaggattggtcagacattgtatttggaatatctgaagatatcgatttcatt 1009 Query: 240 gctctttcatttgtaaa 256 || ||||||||||||| Sbjct: 1010 gcagtttcatttgtaaa 1026
>emb|AL365185.11| Human DNA sequence from clone RP11-416C17 on chromosome 10 Contains part of gene FLJ11218, complete sequence Length = 150635 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 231 gattgtattgctctttcatttgt 253 ||||||||||||||||||||||| Sbjct: 61299 gattgtattgctctttcatttgt 61321
>emb|BX248393.5| Zebrafish DNA sequence from clone CH211-233O13, complete sequence Length = 166286 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 162 aactttgggcttcctacattat 183 |||||||||||||||||||||| Sbjct: 103673 aactttgggcttcctacattat 103694
>ref|NM_125763.2| Arabidopsis thaliana pyruvate kinase AT5G63680 mRNA, complete cds Length = 1880 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 391 tcatggttgcgcgtggtgatcttgg 415 |||||||||| |||||||||||||| Sbjct: 904 tcatggttgctcgtggtgatcttgg 928
>gb|AC146173.2| Pan troglodytes BAC clone RP43-36F20 from 7, complete sequence Length = 197121 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 aagaaccttaaagacatcata 374 ||||||||||||||||||||| Sbjct: 179673 aagaaccttaaagacatcata 179653
>gb|AC079791.5| Homo sapiens BAC clone RP11-500M10 from 7, complete sequence Length = 103836 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 aagaaccttaaagacatcata 374 ||||||||||||||||||||| Sbjct: 49415 aagaaccttaaagacatcata 49395
>emb|BX927154.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 7/10 Length = 349575 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 390 gtcatggttgcgcgtggtgatcttggagttcaggttcctct 430 ||||||||||| |||||||| || || ||| |||||||||| Sbjct: 81437 gtcatggttgctcgtggtgacctcggcgttgaggttcctct 81397
>emb|BX571867.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 9/17 Length = 336609 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 391 tcatggttgcgcgtggtgatcttgg 415 |||||||||| |||||||||||||| Sbjct: 269630 tcatggttgctcgtggtgatcttgg 269654
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 390 gtcatggttgcgcgtggtgatcttggagttcaggttcctct 430 ||||||||||| |||||||| || || ||| |||||||||| Sbjct: 2206381 gtcatggttgctcgtggtgacctcggcgttgaggttcctct 2206341
>dbj|AB005234.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBK5 Length = 89779 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 391 tcatggttgcgcgtggtgatcttgg 415 |||||||||| |||||||||||||| Sbjct: 44903 tcatggttgctcgtggtgatcttgg 44927
>gb|L27126.1|CORPYKI Corynebacterium pyruvate kinase gene, complete cds Length = 2795 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 390 gtcatggttgcgcgtggtgatcttggagttcaggttcctct 430 ||||||||||| |||||||| || || ||| |||||||||| Sbjct: 1457 gtcatggttgctcgtggtgacctcggcgttgaggttcctct 1497
>ref|NM_103364.2| Arabidopsis thaliana NIA2 (NITRATE REDUCTASE 2) AT1G37130 (NIA2) mRNA, complete cds Length = 3130 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gagcttgtcattgatggtgg 37 |||||||||||||||||||| Sbjct: 2217 gagcttgtcattgatggtgg 2198
>ref|XM_506198.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1014_E09.29 mRNA Length = 1626 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 8 agttggtgatgagcttgtcattgatggtggaatggc 43 |||||||||||||||| | |||||||||| ||||| Sbjct: 240 agttggtgatgagcttcttgttgatggtggcatggc 275
>ref|XM_476866.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2005 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 8 agttggtgatgagcttgtcattgatggtggaatggc 43 |||||||||||||||| | |||||||||| ||||| Sbjct: 581 agttggtgatgagcttcttgttgatggtggcatggc 616
>gb|AC161262.2| Mus musculus BAC clone RP23-325G1 from chromosome 9, complete sequence Length = 204750 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 gtcattgatggtggaatggc 43 |||||||||||||||||||| Sbjct: 100995 gtcattgatggtggaatggc 101014
>gb|AY575950.1| Synthetic construct nitrate reductase 2 mRNA, complete cds Length = 2787 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gagcttgtcattgatggtgg 37 |||||||||||||||||||| Sbjct: 2160 gagcttgtcattgatggtgg 2141
>gb|AC123865.5| Mus musculus BAC clone RP23-365C14 from chromosome 10, complete sequence Length = 212994 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 acccaggtttgcttcttcct 116 |||||||||||||||||||| Sbjct: 163159 acccaggtttgcttcttcct 163178
>gb|AC005681.2| Homo sapiens BAC clone GS1-59G8 from 7, complete sequence Length = 129989 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tgcacagacccaggtttgct 109 |||||||||||||||||||| Sbjct: 90897 tgcacagacccaggtttgct 90916
>emb|AL359202.16| Human DNA sequence from clone RP11-541F16 on chromosome 9, complete sequence Length = 115372 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tattgctctttcatttgtaa 255 |||||||||||||||||||| Sbjct: 76086 tattgctctttcatttgtaa 76067
>gb|AY142568.1| Arabidopsis thaliana putative nitrate reductase (At1g37130) mRNA, complete cds Length = 2785 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gagcttgtcattgatggtgg 37 |||||||||||||||||||| Sbjct: 2127 gagcttgtcattgatggtgg 2108
>gb|AY039914.1| Arabidopsis thaliana putative nitrate reductase (At1g37130) mRNA, complete cds Length = 2985 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gagcttgtcattgatggtgg 37 |||||||||||||||||||| Sbjct: 2211 gagcttgtcattgatggtgg 2192
>gb|AY035111.1| Arabidopsis thaliana putative nitrate reductase (At1g37130) mRNA, complete cds Length = 3006 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gagcttgtcattgatggtgg 37 |||||||||||||||||||| Sbjct: 2217 gagcttgtcattgatggtgg 2198
>emb|X13435.1|ATNR2R Arabidopsis thaliana chl-3 mRNA for nitrate reductase NR2 Length = 1188 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gagcttgtcattgatggtgg 37 |||||||||||||||||||| Sbjct: 564 gagcttgtcattgatggtgg 545
>emb|BX470065.7| Zebrafish DNA sequence from clone DKEY-105H11 in linkage group 24, complete sequence Length = 198444 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 tctcaagaaccttaaagaca 369 |||||||||||||||||||| Sbjct: 131050 tctcaagaaccttaaagaca 131069
>gb|AY133530.1| Arabidopsis thaliana At1g37130/F28L22_2 mRNA, complete cds Length = 2754 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gagcttgtcattgatggtgg 37 |||||||||||||||||||| Sbjct: 2127 gagcttgtcattgatggtgg 2108
>gb|AC112212.2| Homo sapiens chromosome 3 clone RP11-185E15, complete sequence Length = 168752 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 catttgaagttacagagaag 65 |||||||||||||||||||| Sbjct: 131589 catttgaagttacagagaag 131608
>gb|AC023395.8| Homo sapiens chromosome 18, clone RP11-484N16, complete sequence Length = 160084 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 ggaaaattagttgaaaggaa 163 |||||||||||||||||||| Sbjct: 53290 ggaaaattagttgaaaggaa 53309
>gb|AC099328.2| Homo sapiens chromosome 3 clone RP11-62G11, complete sequence Length = 156066 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 catttgaagttacagagaag 65 |||||||||||||||||||| Sbjct: 35806 catttgaagttacagagaag 35825
>ref|XM_695090.1| PREDICTED: Danio rerio hypothetical protein LOC571492 (LOC571492), mRNA Length = 1390 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 tctcaagaaccttaaagaca 369 |||||||||||||||||||| Sbjct: 676 tctcaagaaccttaaagaca 695
>gb|AC021701.8| Homo sapiens chromosome 18, clone RP11-704G7, complete sequence Length = 170311 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 ggaaaattagttgaaaggaa 163 |||||||||||||||||||| Sbjct: 161281 ggaaaattagttgaaaggaa 161300
>gb|AF436835.1|AF436835 Arabidopsis thaliana At1g37130/F28L22_2 mRNA, complete cds Length = 3042 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gagcttgtcattgatggtgg 37 |||||||||||||||||||| Sbjct: 2217 gagcttgtcattgatggtgg 2198
>gb|AY858979.1| Nitrosospira sp. TYM9 pyruvate kinase (pykA) gene, complete cds Length = 1497 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 tcatggttgcgcgtggtgatcttg 414 ||||||||||||| |||||||||| Sbjct: 755 tcatggttgcgcgaggtgatcttg 778
>gb|AY858978.1| Nitrosospira sp. NRS527 pyruvate kinase (pykA) gene, complete cds Length = 1497 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 tcatggttgcgcgtggtgatcttg 414 ||||||||||||| |||||||||| Sbjct: 755 tcatggttgcgcgaggtgatcttg 778
>gb|AY858977.1| Nitrosospira sp. GS832 pyruvate kinase (pykA) gene, complete cds Length = 1498 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 tcatggttgcgcgtggtgatcttg 414 ||||||||||||| |||||||||| Sbjct: 756 tcatggttgcgcgaggtgatcttg 779
>gb|AC159710.9| Mus musculus 10 BAC RP24-325N16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 204302 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 gacatttgaagttacagaga 63 |||||||||||||||||||| Sbjct: 182905 gacatttgaagttacagaga 182924
>gb|AY037183.1| Arabidopsis thaliana At1g37130/F28L22_2 mRNA, complete cds Length = 2976 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gagcttgtcattgatggtgg 37 |||||||||||||||||||| Sbjct: 2217 gagcttgtcattgatggtgg 2198
>gb|AF367272.1|AF367272 Arabidopsis thaliana At1g37130/F28L22_2 mRNA, complete cds Length = 3076 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gagcttgtcattgatggtgg 37 |||||||||||||||||||| Sbjct: 2211 gagcttgtcattgatggtgg 2192
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 8 agttggtgatgagcttgtcattgatggtggaatggc 43 |||||||||||||||| | |||||||||| ||||| Sbjct: 4301025 agttggtgatgagcttcttgttgatggtggcatggc 4301060
>emb|BX815547.1|CNS0ABCI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS70ZF10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1175 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gagcttgtcattgatggtgg 37 |||||||||||||||||||| Sbjct: 370 gagcttgtcattgatggtgg 351
>gb|AY085149.1| Arabidopsis thaliana clone 13351 mRNA, complete sequence Length = 2118 Score = 40.1 bits (20), Expect = 6.7 Identities = 41/48 (85%) Strand = Plus / Plus Query: 8 agttggtgatgagcttgtcattgatggtggaatggcgacatttgaagt 55 |||||||||||| ||| | |||||||||| |||| || ||||||||| Sbjct: 832 agttggtgatgaacttctggttgatggtgggatggtgagatttgaagt 879
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 ttggtgatgagcttgtcatt 29 |||||||||||||||||||| Sbjct: 281904 ttggtgatgagcttgtcatt 281885
>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1014_E09 Length = 184624 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 8 agttggtgatgagcttgtcattgatggtggaatggc 43 |||||||||||||||| | |||||||||| ||||| Sbjct: 122079 agttggtgatgagcttcttgttgatggtggcatggc 122114
>emb|BX000484.12| Zebrafish DNA sequence from clone CH211-12E1 in linkage group 2, complete sequence Length = 158932 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 ttagaacacattaagatatt 325 |||||||||||||||||||| Sbjct: 96298 ttagaacacattaagatatt 96279
>gb|AC007505.4|AC007505 Arabidopsis thaliana chromosome I BAC F28L22 genomic sequence, complete sequence Length = 134499 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 gagcttgtcattgatggtgg 37 |||||||||||||||||||| Sbjct: 56961 gagcttgtcattgatggtgg 56980
>dbj|AK070512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055B17, full insert sequence Length = 2023 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 8 agttggtgatgagcttgtcattgatggtggaatggc 43 |||||||||||||||| | |||||||||| ||||| Sbjct: 599 agttggtgatgagcttcttgttgatggtggcatggc 634
>dbj|AK066918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089N03, full insert sequence Length = 1625 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 8 agttggtgatgagcttgtcattgatggtggaatggc 43 |||||||||||||||| | |||||||||| ||||| Sbjct: 239 agttggtgatgagcttcttgttgatggtggcatggc 274
>emb|AL157792.3|CNS01RG7 Human chromosome 14 DNA sequence BAC R-388M7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 194760 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 attagaacacattaagatat 324 |||||||||||||||||||| Sbjct: 94624 attagaacacattaagatat 94605
>gb|AC099715.9| Mus musculus chromosome 10, clone RP23-346B18, complete sequence Length = 206811 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 gacatttgaagttacagaga 63 |||||||||||||||||||| Sbjct: 23454 gacatttgaagttacagaga 23473
>gb|J03240.1|ATHNRA A.thaliana nitrate reductase mRNA, complete cds Length = 3031 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gagcttgtcattgatggtgg 37 |||||||||||||||||||| Sbjct: 2205 gagcttgtcattgatggtgg 2186
>dbj|D87187.1| Mus musculus gene for proteoglycan, partial cds Length = 4002 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 gacatttgaagttacagaga 63 |||||||||||||||||||| Sbjct: 2222 gacatttgaagttacagaga 2241 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,839,039 Number of Sequences: 3902068 Number of extensions: 3839039 Number of successful extensions: 66610 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66444 Number of HSP's gapped (non-prelim): 166 length of query: 496 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 474 effective length of database: 17,147,199,772 effective search space: 8127772691928 effective search space used: 8127772691928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)