>RL23A_TOBAC (Q07761) 60S ribosomal protein L23a (L25)|
          Length = 154

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 41/50 (82%), Positives = 44/50 (88%)
 Frame = +2

Query: 59  AKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           ++KIRT VTFHRPKTL K R+PKYPRIS PGRNKLDQ  ILKYPLTTESA
Sbjct: 35  SQKIRTKVTFHRPKTLKKDRNPKYPRISAPGRNKLDQYGILKYPLTTESA 84

>RL23A_FRIAG (O22644) 60S ribosomal protein L23A|
          Length = 154

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 42/50 (84%), Positives = 43/50 (86%)
 Frame = +2

Query: 59  AKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           AKKIRTSVTFHRPKTL K R+PKYPRIS P RNKLD   ILKYPLTTESA
Sbjct: 35  AKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESA 84

>RL23A_DAUCA (Q9AT35) 60S ribosomal protein L23a|
          Length = 154

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 40/49 (81%), Positives = 43/49 (87%)
 Frame = +2

Query: 62  KKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           KKIRTSVTFHRP+TL+K R+PKYPRIS   RNKLDQ  ILKYPLTTESA
Sbjct: 36  KKIRTSVTFHRPRTLTKDRNPKYPRISATPRNKLDQYQILKYPLTTESA 84

>RL23B_ARATH (Q9M3C3) 60S ribosomal protein L23a-2|
          Length = 154

 Score = 77.4 bits (189), Expect = 9e-15
 Identities = 38/50 (76%), Positives = 40/50 (80%)
 Frame = +2

Query: 59  AKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           AKKIRT VTFHRPKTL+  R PKYP+IS   RNKLD   ILKYPLTTESA
Sbjct: 35  AKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESA 84

>RL23A_ARATH (Q8LD46) 60S ribosomal protein L23a-1 (AtRPL23A-1)|
          Length = 154

 Score = 75.1 bits (183), Expect = 5e-14
 Identities = 37/49 (75%), Positives = 39/49 (79%)
 Frame = +2

Query: 62  KKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           KKIRT VTFHRPKTL+K R  KYP+IS   RNKLD   ILKYPLTTESA
Sbjct: 36  KKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESA 84

>RL23A_RAT (P62752) 60S ribosomal protein L23a|
          Length = 156

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 35/49 (71%), Positives = 37/49 (75%)
 Frame = +2

Query: 62  KKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           KKIRTS TF RPKTL   R PKYPR S P RNKLD   I+K+PLTTESA
Sbjct: 38  KKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESA 86

>RL23A_MOUSE (P62751) 60S ribosomal protein L23a|
          Length = 156

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 35/49 (71%), Positives = 37/49 (75%)
 Frame = +2

Query: 62  KKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           KKIRTS TF RPKTL   R PKYPR S P RNKLD   I+K+PLTTESA
Sbjct: 38  KKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESA 86

>RL23A_HUMAN (P62750) 60S ribosomal protein L23a|
          Length = 156

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 35/49 (71%), Positives = 37/49 (75%)
 Frame = +2

Query: 62  KKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           KKIRTS TF RPKTL   R PKYPR S P RNKLD   I+K+PLTTESA
Sbjct: 38  KKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESA 86

>RL25_PUCGR (P51997) 60S ribosomal protein L25|
          Length = 158

 Score = 58.2 bits (139), Expect = 6e-09
 Identities = 29/51 (56%), Positives = 34/51 (66%)
 Frame = +2

Query: 56  TAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           T ++IRTSVTF RPKTL  +R PKYPR S P   ++D    L  PL TESA
Sbjct: 38  TQRRIRTSVTFRRPKTLRLSRKPKYPRTSVPHAPRMDAYRTLVRPLNTESA 88

>R23A2_CAEEL (Q20647) 60S ribosomal protein L23a 2|
          Length = 146

 Score = 58.2 bits (139), Expect = 6e-09
 Identities = 28/49 (57%), Positives = 34/49 (69%)
 Frame = +2

Query: 62  KKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           K +RTSV F RPKTL  AR P+Y R S P R+KLD   ++K P TTES+
Sbjct: 28  KNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVIKAPHTTESS 76

>RL25B_SCHPO (O74391) 60S ribosomal protein L25-B|
          Length = 141

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = +2

Query: 59  AKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           A+K+RTS TF RPKTL  AR PKY R S P  ++LD+  I+  P+ +ESA
Sbjct: 22  ARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINSESA 71

>R23A1_CAEEL (P48162) 60S ribosomal protein L23a 1|
          Length = 147

 Score = 54.7 bits (130), Expect = 7e-08
 Identities = 25/49 (51%), Positives = 35/49 (71%)
 Frame = +2

Query: 62  KKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           +++RTSV F RP TL  AR  ++PR S P  +K+D   I+++PLTTESA
Sbjct: 29  RQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQHPLTTESA 77

>RL25A_SCHPO (Q10330) 60S ribosomal protein L25-A|
          Length = 141

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 26/50 (52%), Positives = 33/50 (66%)
 Frame = +2

Query: 59  AKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           AKK+RTS TF RPKTL  +R PKY R S     +LD+  I+  P+ +ESA
Sbjct: 22  AKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNPINSESA 71

>RL25_YEAST (P04456) 60S ribosomal protein L25 (YL25) (RP61L)|
          Length = 141

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 24/50 (48%), Positives = 33/50 (66%)
 Frame = +2

Query: 59  AKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           A K+RTS TF  PKTL  AR PKY   + P  N+LD   +++ P+T+E+A
Sbjct: 22  ALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIEQPITSETA 71

>RL25_KLULA (P48045) 60S ribosomal protein L25|
          Length = 142

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 23/50 (46%), Positives = 33/50 (66%)
 Frame = +2

Query: 59  AKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           A K+RTS +F  PKTL  AR PKY   + P  N+LD   +++ P+T+E+A
Sbjct: 23  ALKVRTSASFRLPKTLKLARSPKYATKAVPHYNRLDSYKVIEQPITSETA 72

>RL25_PICJA (P08792) 60S ribosomal protein L25|
          Length = 142

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 22/50 (44%), Positives = 30/50 (60%)
 Frame = +2

Query: 59  AKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           A K+RTS TF  PKTL   R PKY R + P   +LD   ++  P+ +E+A
Sbjct: 23  ALKVRTSTTFRLPKTLKLTRAPKYARKAVPHYQRLDNYKVIVAPIASETA 72

>RL23A_TRYBB (P41165) 60S ribosomal protein L23a (L25)|
          Length = 164

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 56  TAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQXLILKYPLTTESA 208
           T +K  T   F RP T  +    K     +  +NK D   I++YPLTT+ A
Sbjct: 44  TKRKAYTRPQFRRPHTYRRPATVKPSSNVSAIKNKWDAFRIIRYPLTTDKA 94

>RPOB_CYAME (Q85FR7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1036

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +2

Query: 62  KKIRTS--VTFHRPKTLSKAR--DPKYPRISTPGRNKLDQXLILKYPLT 196
           KK+R     T H  K L  AR  DPK   +S  GR KL+Q L L  PL+
Sbjct: 214 KKMRPGEPATVHSAKQLLYARFFDPKKYDLSEVGRYKLNQKLHLDIPLS 262

>IF2_CORDI (Q6NGN2) Translation initiation factor IF-2|
          Length = 953

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 90  TAPRPCPRPGTPSTPGSVPREG 155
           + PRP PRPG  +  G+ PR G
Sbjct: 182 SGPRPAPRPGGGNRSGNAPRPG 203

>P30_MYCPN (P75330) P30 adhesin (Cytadhesin P30) (30 kDa adhesin-related|
           protein)
          Length = 274

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 8/29 (27%)
 Frame = +3

Query: 93  APRP--------CPRPGTPSTPGSVPREG 155
           APRP         PRPG P  PG  PR G
Sbjct: 228 APRPGMPPHPGMAPRPGFPPQPGMAPRPG 256



 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 8/29 (27%)
 Frame = +3

Query: 93  APRP--------CPRPGTPSTPGSVPREG 155
           APRP         PRPG P  PG  PR G
Sbjct: 216 APRPGFPPQPGMAPRPGMPPHPGMAPRPG 244



 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 8/29 (27%)
 Frame = +3

Query: 93  APRP--------CPRPGTPSTPGSVPREG 155
           APRP         PRPG P  PG  PR G
Sbjct: 204 APRPGMPPHPGMAPRPGFPPQPGMAPRPG 232



 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 8/29 (27%)
 Frame = +3

Query: 93  APRP--------CPRPGTPSTPGSVPREG 155
           APRP         PRPG P  PG  PR G
Sbjct: 192 APRPGFPPQPGMAPRPGMPPHPGMAPRPG 220



 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 8/29 (27%)
 Frame = +3

Query: 93  APRP--------CPRPGTPSTPGSVPREG 155
           APRP         PRPG P  PG  PR G
Sbjct: 180 APRPGMPPHPGMAPRPGFPPQPGMAPRPG 208



 Score = 27.7 bits (60), Expect = 8.6
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 96  PRPCPRPGTPSTPGSVPREG 155
           P   PRPG P  PG  PR G
Sbjct: 177 PGMAPRPGMPPHPGMAPRPG 196


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,985,482
Number of Sequences: 219361
Number of extensions: 290222
Number of successful extensions: 1770
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1768
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)