ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags37f22 |
|---|---|
| Clone Library Name | barley_pub |
>DCP1_ARATH (Q9SJF3) mRNA decapping enzyme-like protein (EC 3.-.-.-) (DCP1| homolog) Length = 367 Score = 252 bits (643), Expect = 7e-67 Identities = 126/193 (65%), Positives = 151/193 (78%), Gaps = 1/193 (0%) Frame = +1 Query: 4 TRLLNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNSQPRFQF 183 TRLLNLTVLQR+DP +E+ILITAAHVT Y+FNI+L+QWSRKDVEGSLFVVKR++QPRFQF Sbjct: 16 TRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEGSLFVVKRSTQPRFQF 75 Query: 184 IVMNRRNTDNLVEDLLSDFEYELQPPYLLYRNATQEVNGIWFYNQQECEAVASLFGRILN 363 IVMNRRNTDNLVE+LL DFEYE+Q PYLLYRNA+QEVNGIWFYN++ECE VA+LF RIL+ Sbjct: 76 IVMNRRNTDNLVENLLGDFEYEVQGPYLLYRNASQEVNGIWFYNKRECEEVATLFNRILS 135 Query: 364 AYAXXXXXXXXXXXXXEFEELEAVLTSSAIDGPLEPPPSATAVVSDTPDE-SFASYFSGV 540 AY+ EFEELEA T + +DGPLEP +A D PD+ +F ++FS Sbjct: 136 AYSKVNQKPKASSSKSEFEELEAKPTMAVMDGPLEPSSTA----RDAPDDPAFVNFFSST 191 Query: 541 ANAGNVPTAPMTG 579 N GN + +G Sbjct: 192 MNLGNTASGSASG 204
>DCP1B_PONPY (Q5R413) mRNA decapping enzyme 1B (EC 3.-.-.-)| Length = 609 Score = 110 bits (275), Expect = 3e-24 Identities = 49/113 (43%), Positives = 74/113 (65%) Frame = +1 Query: 7 RLLNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNSQPRFQFI 186 R ++L LQR DP + I+ A+ V LY F N+W + DVEG+LFV R++ P+ F Sbjct: 14 RDISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGFT 73 Query: 187 VMNRRNTDNLVEDLLSDFEYELQPPYLLYRNATQEVNGIWFYNQQECEAVASL 345 +MNR + +N E + D +++LQ P+LLYRNA + GIWFY+++EC+ +A L Sbjct: 74 IMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAEL 126
>DCP1B_HUMAN (Q8IZD4) mRNA decapping enzyme 1B (EC 3.-.-.-)| Length = 618 Score = 110 bits (275), Expect = 3e-24 Identities = 49/113 (43%), Positives = 74/113 (65%) Frame = +1 Query: 7 RLLNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNSQPRFQFI 186 R ++L LQR DP + I+ A+ V LY F N+W + DVEG+LFV R++ P+ F Sbjct: 14 RDISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGFT 73 Query: 187 VMNRRNTDNLVEDLLSDFEYELQPPYLLYRNATQEVNGIWFYNQQECEAVASL 345 +MNR + +N E + D +++LQ P+LLYRNA + GIWFY+++EC+ +A L Sbjct: 74 IMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAEL 126
>DCP1A_MOUSE (Q91YD3) mRNA decapping enzyme 1A (EC 3.-.-.-) (Transcription| factor SMIF) (MAD homolog 4-interacting transcription coactivator 1) (Smad4-interacting transcriptional co-activator) Length = 602 Score = 101 bits (252), Expect = 1e-21 Identities = 45/116 (38%), Positives = 70/116 (60%) Frame = +1 Query: 13 LNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNSQPRFQFIVM 192 ++L L++ DP + I V LY F NQW + D+EG+LFV +R++ P F ++ Sbjct: 31 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGFTIV 90 Query: 193 NRRNTDNLVEDLLSDFEYELQPPYLLYRNATQEVNGIWFYNQQECEAVASLFGRIL 360 NR N NLVE + D E++L P+LLYRNA+ + IWFY++ +C +A L ++ Sbjct: 91 NRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVV 146
>DCP1A_HUMAN (Q9NPI6) mRNA decapping enzyme 1A (EC 3.-.-.-) (Transcription| factor SMIF) (Smad4-interacting transcriptional co-activator) Length = 582 Score = 101 bits (252), Expect = 1e-21 Identities = 45/116 (38%), Positives = 70/116 (60%) Frame = +1 Query: 13 LNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNSQPRFQFIVM 192 ++L L++ DP + I V LY F NQW + D+EG+LFV +R++ P F ++ Sbjct: 11 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGFTIV 70 Query: 193 NRRNTDNLVEDLLSDFEYELQPPYLLYRNATQEVNGIWFYNQQECEAVASLFGRIL 360 NR N NLVE + D E++L P+LLYRNA+ + IWFY++ +C +A L ++ Sbjct: 71 NRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVV 126
>DCP1_ASHGO (Q74Z05) mRNA decapping enzyme 1| Length = 193 Score = 43.9 bits (102), Expect = 4e-04 Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 50/168 (29%) Frame = +1 Query: 7 RLLNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNSQPR---- 174 + LN V+ R DP ++ +L H T+Y + N+W++ + +G L + R+ + + Sbjct: 17 KTLNFNVIGRYDPKIKQLLFHTPHATVYKWEAGENKWNKLEYQGVLAIYLRDVREQAELP 76 Query: 175 -------------------------FQFIVMNRRNTDNL--------------------- 216 + IV+NR N +N Sbjct: 77 VPHQEASAGAEGRCGEVLSGRDIYNYALIVLNRINPENFSIAIAPNSVVNKRRLFSPEEN 136 Query: 217 VEDLLSDFEYELQPPYLLYRNATQEVNGIWFYNQQECEAVASLFGRIL 360 V+ L + E++ ++ +N +EV GIW + + + + L +L Sbjct: 137 VQQPLEPMDVEVKDELVIIKNLRKEVYGIWIHTPTDRQNIYDLLKYLL 184
>DCP1_YEAST (Q12517) mRNA decapping enzyme 1| Length = 231 Score = 38.5 bits (88), Expect = 0.015 Identities = 15/68 (22%), Positives = 35/68 (51%) Frame = +1 Query: 7 RLLNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNSQPRFQFI 186 + LN V+ R DP ++ +L H +LY ++ ++W++ + +G L + R+ + Sbjct: 20 KALNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLRDVSQNTNLL 79 Query: 187 VMNRRNTD 210 ++ + D Sbjct: 80 PVSPQEVD 87
>ZCH14_MOUSE (Q8VIG0) Zinc finger CCHC domain-containing protein 14 (BDG-29)| Length = 956 Score = 33.1 bits (74), Expect = 0.63 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = +1 Query: 460 PLEPPPSATAVVSDTPDESFASYFSGVANAGNVPTAPMTGRAH-----PPA 597 P P PS++ +S P+ SF S +G ++ GN+P + + H PPA Sbjct: 731 PSCPAPSSSPALSSVPESSFYSGGAGSSSPGNIPASSQSHHHHHHHQQPPA 781
>ACC4B_BRARE (Q708S3) Amiloride-sensitive cation channel 4-B (Acid-sensing ion| channel 4.2) (ZASIC4.2) Length = 558 Score = 32.3 bits (72), Expect = 1.1 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%) Frame = -1 Query: 292 LPVWH-SDTTNMEAGVRIQNHSTNPP 218 LP+W ++ T +EAG+R+Q HS N P Sbjct: 238 LPIWRETNETTLEAGIRVQIHSQNEP 263
>ZCH14_HUMAN (Q8WYQ9) Zinc finger CCHC domain-containing protein 14 (BDG-29)| Length = 949 Score = 31.6 bits (70), Expect = 1.8 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%) Frame = +1 Query: 460 PLEPPPSATAVVSDTPDESFASYFSGVANAGNVPTAPMTGRAH-----PPA 597 P P PS++ +S P+ SF S G + GN+P + H PPA Sbjct: 724 PSCPAPSSSPALSSVPESSFYSSSGGGGSTGNIPASNPNHHHHHHHQQPPA 774
>YL764_MIMIV (Q5UPQ4) Putative ankyrin repeat protein L764| Length = 647 Score = 31.2 bits (69), Expect = 2.4 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 9/102 (8%) Frame = +1 Query: 85 LYDFNIDLNQWSRKDVEGSLFVVKRNSQPRFQFIVMNRR-----NTDNLVEDLLSDFEYE 249 L DFN D N++ + S F++ P ++ V +++ N N+VE L+SD ++E Sbjct: 549 LLDFNADNNEYVQ-----SAFLLSVFYTPLLKYFVEDKQIDLTVNGQNIVEYLISDGDHE 603 Query: 250 LQPPYLLYRNATQEVNGIWFYN----QQECEAVASLFGRILN 363 + YL Y + NG N EC A+ L I N Sbjct: 604 IF-RYLYYNGFDVKNNGFEIINAHNSNNEC-AITKLIESIKN 643
>HNF4_DROME (P49866) Transcription factor HNF-4 homolog (dHNF4)| Length = 666 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = -3 Query: 524 LANDSSGVSETTAVADGGGSRGPSMAEDVRTASNSSNSLF 405 L+N S+ SE A+ +G G+ G + + SN++NS+F Sbjct: 33 LSNSSNQSSENFALCNGNGNAGSAGGGSASSGSNNNNSMF 72
>ACC4A_BRARE (Q708S4) Amiloride-sensitive cation channel 4-A (Acid-sensing ion| channel 4.1) (ZASIC4.1) Length = 539 Score = 30.8 bits (68), Expect = 3.1 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%) Frame = -1 Query: 292 LPVW-HSDTTNMEAGVRIQNHSTNPP 218 LP+W ++ T++EAG+R+Q HS + P Sbjct: 234 LPIWKETNETSLEAGIRVQIHSQDEP 259
>RNPA_CHLCV (Q821V0) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP| protein) (RNase P protein) (Protein C5) Length = 139 Score = 30.0 bits (66), Expect = 5.3 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Frame = +1 Query: 124 KDVEGSLFVVKRNSQPRFQFIVMNRRNTDNLVEDLLSDFEYELQPPYLLYRNATQEVNGI 303 K + F KR+S P Q +VM + EDLL DF ++ + G+ Sbjct: 66 KRIVREAFRKKRHSLPACQIVVMPKNKQQPKFEDLLQDFAQQIPEALSSKLAKNKPTTGV 125 Query: 304 WFYNQQE-CEAV 336 + + E CE+V Sbjct: 126 EYSPKNEKCESV 137
>ACCN4_HUMAN (Q96FT7) Amiloride-sensitive cation channel 4 (Amiloride-sensitive| cation channel 4, pituitary) (Acid-sensing ion channel 4) Length = 647 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = -1 Query: 292 LPVWH-SDTTNMEAGVRIQNHSTNPP 218 LP+W ++ T+ EAG+R+Q HS P Sbjct: 363 LPIWRETNETSFEAGIRVQIHSQEEP 388
>VSP2_AGKCO (P82981) Contortrixobin (EC 3.4.21.-)| Length = 234 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/60 (28%), Positives = 33/60 (55%) Frame = +1 Query: 52 EDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNSQPRFQFIVMNRRNTDNLVEDLL 231 ++ ++TAAH DF I L S+K + ++ P+ +FI N++N + L +D++ Sbjct: 33 QEWVLTAAHCDSTDFQIKLGAHSKKVLNED----EQIRNPKEKFICPNKKNDEVLDKDIM 88
>GLTA_BACSU (P39812) Glutamate synthase [NADPH] large chain (EC 1.4.1.13)| (NADPH-GOGAT) Length = 1520 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +1 Query: 472 PPSATAVVSDTPDESFASYFSGVANAGNVPTAPMTGRAHP 591 P A SD DE+F S F+ V + + T P RAHP Sbjct: 204 PEQVDAFYSDLQDEAFVSAFALVHSRFSTNTFPTWERAHP 243
>ACCN4_RAT (Q9JHS6) Amiloride-sensitive cation channel 4 (Acid-sensing ion| channel 4) (Spinal chord ASIC) Length = 539 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = -1 Query: 292 LPVWH-SDTTNMEAGVRIQNHSTNPP 218 LP+W ++ T+ EAG+R+Q HS P Sbjct: 236 LPIWRETNETSFEAGIRVQIHSQEEP 261
>ACCN4_MOUSE (Q7TNS7) Amiloride-sensitive cation channel 4 (Amiloride-sensitive| cation channel 4) (Acid-sensing ion channel 4) Length = 539 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = -1 Query: 292 LPVWH-SDTTNMEAGVRIQNHSTNPP 218 LP+W ++ T+ EAG+R+Q HS P Sbjct: 236 LPIWRETNETSFEAGIRVQIHSQEEP 261
>ATG18_CRYNE (Q5KGQ2) Autophagy-related protein 18| Length = 423 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +1 Query: 469 PPPSATAVVSDTPDESFASYFSGVANAGNVPTAPMTGRAHPPA 597 P P+A +S + + S+ +Y S V +A + P + A PPA Sbjct: 136 PNPNAVCALSSSSERSYLAYPSPVPSASSTPLSSSAIPAPPPA 178
>HEMA_CVHOC (P30215) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3| glycoprotein) Length = 424 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/58 (27%), Positives = 26/58 (44%) Frame = +1 Query: 193 NRRNTDNLVEDLLSDFEYELQPPYLLYRNATQEVNGIWFYNQQECEAVASLFGRILNA 366 N R +DN+ QPPY +RN+T G++ N + + L G + N+ Sbjct: 295 NARQSDNMTA-------VACQPPYCYFRNSTTNYVGVYDINHGDAGFTSILSGLLYNS 345
>PAC11_YEAST (P40960) Protein PAC11| Length = 533 Score = 29.3 bits (64), Expect = 9.1 Identities = 19/61 (31%), Positives = 29/61 (47%) Frame = +1 Query: 1 GTRLLNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNSQPRFQ 180 GTR++ T+L+R P I I A +T +L +K ++VV+RN R Sbjct: 247 GTRIMTATILRRYHPESNVISILLATLTGKIILYELRLKQKKPETPVVYVVQRNMVARHY 306 Query: 181 F 183 F Sbjct: 307 F 307
>R4RL2_RAT (Q80WD1) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor| homolog 1) (Nogo-66 receptor-related protein 2) (NgR2) (Nogo receptor-like 3) Length = 420 Score = 29.3 bits (64), Expect = 9.1 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = +1 Query: 469 PPPSATAVVSDTPDESFASYFSGVANAGNVPTAPMTGRAHPPAE 600 PPP+ T S S +++ GVA AG P P T PAE Sbjct: 311 PPPTPTRPGSRARGNSSSNHLYGVAEAGAPPADPSTLYRDLPAE 354
>R4RL2_MOUSE (Q7M6Z0) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor| homolog 1) (Nogo-66 receptor-related protein 2) (NgR2) (Nogo receptor-like 3) Length = 420 Score = 29.3 bits (64), Expect = 9.1 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = +1 Query: 469 PPPSATAVVSDTPDESFASYFSGVANAGNVPTAPMTGRAHPPAE 600 PPP+ T S S +++ GVA AG P P T PAE Sbjct: 311 PPPTPTRPGSRARGNSSSNHLYGVAEAGAPPADPSTLYRDLPAE 354 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,867,415 Number of Sequences: 219361 Number of extensions: 1648214 Number of successful extensions: 5257 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5071 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5253 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
