| Clone Name | bags37f22 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099278.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125D09, full insert sequence Length = 1546 Score = 523 bits (264), Expect = e-145 Identities = 417/468 (89%) Strand = Plus / Plus Query: 4 acgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctc 63 ||||| ||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 148 acgcggctgctcaacctcaccgtgctgcagcgcctcgaccccgccgtcgaggacatcctc 207 Query: 64 atcaccgccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtggagccgg 123 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 208 atcaccgccgcccacgtcacgctctacgacttcaacatcgagctcaaccagtggagccgg 267 Query: 124 aaggacgtggagggatcgctcttcgtggtgaagaggaactcacagccgaggttccagttc 183 |||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct: 268 aaggacgtcgagggatcgctgttcgtggtgaagaggaacaagcagccgaggttccagttc 327 Query: 184 atcgtcatgaacaggcgcaataccgataatctcgtggaggatttgttgagtgattttgaa 243 ||||||||||||||||| || ||||||||||||||||||||| | |||||||| |||||| Sbjct: 328 atcgtcatgaacaggcgtaacaccgataatctcgtggaggatctattgagtgactttgaa 387 Query: 244 tacgaactccagcctccatatttgttgtatcggaatgccacacaggaagtaaatggcatt 303 | ||||| |||||||| |||||||| || || ||||| |||| |||||||| || ||| Sbjct: 388 tttgaacttcagcctccgtatttgttataccgaaatgctgcacaagaagtaaacggtatt 447 Query: 304 tggttttataaccaacaggagtgtgaagctgtcgctagtttgtttggaaggatactgaat 363 ||||||||||||||||| || ||||| ||||| || || | |||||||||||| ||||| Sbjct: 448 tggttttataaccaacaagactgtgatgctgttgcaggtgtttttggaaggatattgaat 507 Query: 364 gcttacgccaaagtgcccccaaagccgaaagtgtcatctataaaaagtgagtttgaggaa 423 ||||||||||||||||| |||||||| ||||| | || | ||||||||||||||||||| Sbjct: 508 gcttacgccaaagtgcctccaaagcccaaagtaccttccacaaaaagtgagtttgaggaa 567 Query: 424 ttagaggctgttcttacatcctctgccatagatggtccccttgaacct 471 || || ||||||| ||||||| |||| |||||||| |||||||||||| Sbjct: 568 ttggaagctgttcctacatccgctgctatagatggcccccttgaacct 615
>dbj|AK072086.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116L20, full insert sequence Length = 1485 Score = 523 bits (264), Expect = e-145 Identities = 417/468 (89%) Strand = Plus / Plus Query: 4 acgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctc 63 ||||| ||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 157 acgcggctgctcaacctcaccgtgctgcagcgcctcgaccccgccgtcgaggacatcctc 216 Query: 64 atcaccgccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtggagccgg 123 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 217 atcaccgccgcccacgtcacgctctacgacttcaacatcgagctcaaccagtggagccgg 276 Query: 124 aaggacgtggagggatcgctcttcgtggtgaagaggaactcacagccgaggttccagttc 183 |||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct: 277 aaggacgtcgagggatcgctgttcgtggtgaagaggaacaagcagccgaggttccagttc 336 Query: 184 atcgtcatgaacaggcgcaataccgataatctcgtggaggatttgttgagtgattttgaa 243 ||||||||||||||||| || ||||||||||||||||||||| | |||||||| |||||| Sbjct: 337 atcgtcatgaacaggcgtaacaccgataatctcgtggaggatctattgagtgactttgaa 396 Query: 244 tacgaactccagcctccatatttgttgtatcggaatgccacacaggaagtaaatggcatt 303 | ||||| |||||||| |||||||| || || ||||| |||| |||||||| || ||| Sbjct: 397 tttgaacttcagcctccgtatttgttataccgaaatgctgcacaagaagtaaacggtatt 456 Query: 304 tggttttataaccaacaggagtgtgaagctgtcgctagtttgtttggaaggatactgaat 363 ||||||||||||||||| || ||||| ||||| || || | |||||||||||| ||||| Sbjct: 457 tggttttataaccaacaagactgtgatgctgttgcaggtgtttttggaaggatattgaat 516 Query: 364 gcttacgccaaagtgcccccaaagccgaaagtgtcatctataaaaagtgagtttgaggaa 423 ||||||||||||||||| |||||||| ||||| | || | ||||||||||||||||||| Sbjct: 517 gcttacgccaaagtgcctccaaagcccaaagtaccttccacaaaaagtgagtttgaggaa 576 Query: 424 ttagaggctgttcttacatcctctgccatagatggtccccttgaacct 471 || || ||||||| ||||||| |||| |||||||| |||||||||||| Sbjct: 577 ttggaagctgttcctacatccgctgctatagatggcccccttgaacct 624
>gb|AY109088.1| Zea mays PCO062740 mRNA sequence Length = 822 Score = 394 bits (199), Expect = e-106 Identities = 379/437 (86%), Gaps = 3/437 (0%) Strand = Plus / Plus Query: 3 cacgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcct 62 |||||||||||| |||||||| || || |||||| | |||||||||||||| |||||||| Sbjct: 156 cacgcgcctgctcaacctcacggtgctccagcgcttggaccccgccgtcgaggacatcct 215 Query: 63 catcaccgccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtggagccg 122 ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct: 216 tatcaccgccgcgcacgtcacactctacgatttcaacatcgacctcaaccagtggagccg 275 Query: 123 gaaggacgtggagggatcgctcttcgtggtgaagaggaactcacagccgaggttccagtt 182 ||||||||| ||||| ||||| || || || ||||||||||| ||||| | |||||||| Sbjct: 276 gaaggacgtcgaggggtcgctgtttgtcgtcaagaggaactctcagccccgattccagtt 335 Query: 183 catcgtcatgaacaggcgcaataccgataatctcgtggaggatttgttgagtgattttga 242 ||||||||||||| ||||||| || |||||||| ||||||||| | || ||||||||||| Sbjct: 336 catcgtcatgaaccggcgcaacactgataatctggtggaggatctcttaagtgattttga 395 Query: 243 atacgaactccagcctccatatttgttgtatcggaatgccacacaggaagtaaatggcat 302 |||||| || || ||||||||||||||||| ||||| || |||| ||||| ||||| || Sbjct: 396 atacgagcttcaacctccatatttgttgtaccggaacgcttcacaagaagtcaatggaat 455 Query: 303 ttggttttataaccaacaggagtgtgaagctgtcgctagtttgtttggaaggatactgaa 362 ||||||||| ||||||||||| ||||||||||| || ||| | ||||||||||||||||| Sbjct: 456 ttggttttacaaccaacaggactgtgaagctgttgcaagtctatttggaaggatactgaa 515 Query: 363 tgcttacgccaaagtgccc--ccaaagccgaaagtgtcatct-ataaaaagtgagtttga 419 ||||||||||||||| || ||||| || |||||| | || | ||||||||||||||| Sbjct: 516 tgcttacgccaaagttacctcccaaaacctaaagtgccttcccacaaaaagtgagtttga 575 Query: 420 ggaattagaggctgttc 436 |||| | || ||||||| Sbjct: 576 ggaactggangctgttc 592
>ref|XM_477277.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1600 Score = 182 bits (92), Expect = 9e-43 Identities = 251/304 (82%) Strand = Plus / Plus Query: 11 tgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctcatcaccg 70 |||| ||| ||||||| || |||||||| |||||||||||||| |||||||||||||||| Sbjct: 260 tgctcaacatcaccgtgctccagcgcctcgaccccgccgtcgaggacatcctcatcaccg 319 Query: 71 ccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtggagccggaaggacg 130 ||| ||||||||||||||||||||| ||| | ||||||||||||||||||||||||| | Sbjct: 320 ccggccacgtcacgctctacgacttcgacaccaacctcaaccagtggagccggaaggatg 379 Query: 131 tggagggatcgctcttcgtggtgaagaggaactcacagccgaggttccagttcatcgtca 190 ||||||| ||||||||||| || |||||||| | ||||| || |||||||| | |||| Sbjct: 380 tggaggggtcgctcttcgttgtcaagaggaatgcgcagcccagattccagtttgttgtca 439 Query: 191 tgaacaggcgcaataccgataatctcgtggaggatttgttgagtgattttgaatacgaac 250 |||| | || ||||| |||||| | || || ||| | || | ||||||||||| | | Sbjct: 440 tgaatcgtcgtaatacagataatttagttgaagatctcctgggagattttgaatatcagc 499 Query: 251 tccagcctccatatttgttgtatcggaatgccacacaggaagtaaatggcatttggtttt 310 | ||| ||| ||| | ||||||| ||||| |||| ||||| | |||||||||||||| Sbjct: 500 ttcaggttccctatataatgtatcgcaatgctgcacaagaagttattggcatttggtttt 559 Query: 311 ataa 314 |||| Sbjct: 560 ataa 563
>ref|XM_506243.1| PREDICTED Oryza sativa (japonica cultivar-group), P0021G06.113 mRNA Length = 1637 Score = 182 bits (92), Expect = 9e-43 Identities = 251/304 (82%) Strand = Plus / Plus Query: 11 tgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctcatcaccg 70 |||| ||| ||||||| || |||||||| |||||||||||||| |||||||||||||||| Sbjct: 290 tgctcaacatcaccgtgctccagcgcctcgaccccgccgtcgaggacatcctcatcaccg 349 Query: 71 ccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtggagccggaaggacg 130 ||| ||||||||||||||||||||| ||| | ||||||||||||||||||||||||| | Sbjct: 350 ccggccacgtcacgctctacgacttcgacaccaacctcaaccagtggagccggaaggatg 409 Query: 131 tggagggatcgctcttcgtggtgaagaggaactcacagccgaggttccagttcatcgtca 190 ||||||| ||||||||||| || |||||||| | ||||| || |||||||| | |||| Sbjct: 410 tggaggggtcgctcttcgttgtcaagaggaatgcgcagcccagattccagtttgttgtca 469 Query: 191 tgaacaggcgcaataccgataatctcgtggaggatttgttgagtgattttgaatacgaac 250 |||| | || ||||| |||||| | || || ||| | || | ||||||||||| | | Sbjct: 470 tgaatcgtcgtaatacagataatttagttgaagatctcctgggagattttgaatatcagc 529 Query: 251 tccagcctccatatttgttgtatcggaatgccacacaggaagtaaatggcatttggtttt 310 | ||| ||| ||| | ||||||| ||||| |||| ||||| | |||||||||||||| Sbjct: 530 ttcaggttccctatataatgtatcgcaatgctgcacaagaagttattggcatttggtttt 589 Query: 311 ataa 314 |||| Sbjct: 590 ataa 593
>dbj|AK104695.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-A01, full insert sequence Length = 1600 Score = 182 bits (92), Expect = 9e-43 Identities = 251/304 (82%) Strand = Plus / Plus Query: 11 tgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctcatcaccg 70 |||| ||| ||||||| || |||||||| |||||||||||||| |||||||||||||||| Sbjct: 260 tgctcaacatcaccgtgctccagcgcctcgaccccgccgtcgaggacatcctcatcaccg 319 Query: 71 ccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtggagccggaaggacg 130 ||| ||||||||||||||||||||| ||| | ||||||||||||||||||||||||| | Sbjct: 320 ccggccacgtcacgctctacgacttcgacaccaacctcaaccagtggagccggaaggatg 379 Query: 131 tggagggatcgctcttcgtggtgaagaggaactcacagccgaggttccagttcatcgtca 190 ||||||| ||||||||||| || |||||||| | ||||| || |||||||| | |||| Sbjct: 380 tggaggggtcgctcttcgttgtcaagaggaatgcgcagcccagattccagtttgttgtca 439 Query: 191 tgaacaggcgcaataccgataatctcgtggaggatttgttgagtgattttgaatacgaac 250 |||| | || ||||| |||||| | || || ||| | || | ||||||||||| | | Sbjct: 440 tgaatcgtcgtaatacagataatttagttgaagatctcctgggagattttgaatatcagc 499 Query: 251 tccagcctccatatttgttgtatcggaatgccacacaggaagtaaatggcatttggtttt 310 | ||| ||| ||| | ||||||| ||||| |||| ||||| | |||||||||||||| Sbjct: 500 ttcaggttccctatataatgtatcgcaatgctgcacaagaagttattggcatttggtttt 559 Query: 311 ataa 314 |||| Sbjct: 560 ataa 563
>dbj|AK067442.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100P19, full insert sequence Length = 1637 Score = 182 bits (92), Expect = 9e-43 Identities = 251/304 (82%) Strand = Plus / Plus Query: 11 tgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctcatcaccg 70 |||| ||| ||||||| || |||||||| |||||||||||||| |||||||||||||||| Sbjct: 290 tgctcaacatcaccgtgctccagcgcctcgaccccgccgtcgaggacatcctcatcaccg 349 Query: 71 ccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtggagccggaaggacg 130 ||| ||||||||||||||||||||| ||| | ||||||||||||||||||||||||| | Sbjct: 350 ccggccacgtcacgctctacgacttcgacaccaacctcaaccagtggagccggaaggatg 409 Query: 131 tggagggatcgctcttcgtggtgaagaggaactcacagccgaggttccagttcatcgtca 190 ||||||| ||||||||||| || |||||||| | ||||| || |||||||| | |||| Sbjct: 410 tggaggggtcgctcttcgttgtcaagaggaatgcgcagcccagattccagtttgttgtca 469 Query: 191 tgaacaggcgcaataccgataatctcgtggaggatttgttgagtgattttgaatacgaac 250 |||| | || ||||| |||||| | || || ||| | || | ||||||||||| | | Sbjct: 470 tgaatcgtcgtaatacagataatttagttgaagatctcctgggagattttgaatatcagc 529 Query: 251 tccagcctccatatttgttgtatcggaatgccacacaggaagtaaatggcatttggtttt 310 | ||| ||| ||| | ||||||| ||||| |||| ||||| | |||||||||||||| Sbjct: 530 ttcaggttccctatataatgtatcgcaatgctgcacaagaagttattggcatttggtttt 589 Query: 311 ataa 314 |||| Sbjct: 590 ataa 593
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence Length = 123477 Score = 176 bits (89), Expect = 5e-41 Identities = 110/117 (94%) Strand = Plus / Minus Query: 1 ggcacgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatc 60 |||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| |||||| Sbjct: 74245 ggcacgcggctgctcaacctcaccgtgctgcagcgcctcgaccccgccgtcgaggacatc 74186 Query: 61 ctcatcaccgccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtgg 117 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 74185 ctcatcaccgccgcccacgtcaccctctacgacttcaacatcgacctcaaccagtgg 74129 Score = 93.7 bits (47), Expect = 6e-16 Identities = 122/147 (82%) Strand = Plus / Minus Query: 208 gataatctcgtggaggatttgttgagtgattttgaatacgaactccagcctccatatttg 267 |||||||| ||||||||| | ||||||||||||||||| ||||| || ||||| |||||| Sbjct: 73575 gataatctggtggaggatctattgagtgattttgaatatgaacttcaacctccgtatttg 73516 Query: 268 ttgtatcggaatgccacacaggaagtaaatggcatttggttttataaccaacaggagtgt 327 ||||| || ||||| | || ||||||||||| || ||||| || || ||||| || || Sbjct: 73515 ttgtaccgcaatgctgcccaagaagtaaatggtatctggttctacaatcaacatgactgc 73456 Query: 328 gaagctgtcgctagtttgtttggaagg 354 |||||||| || ||| | ||||||||| Sbjct: 73455 gaagctgttgcaagtctttttggaagg 73429 Score = 69.9 bits (35), Expect = 9e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 409 agtgagtttgaggaattagaggctgttcttacatcctctgccatagatggtccccttgaa 468 |||||||| |||||||| |||||||| | |||||| | ||||||||||||||||||||| Sbjct: 72284 agtgagttcgaggaattggaggctgtgcctacatctgcagccatagatggtccccttgaa 72225 Query: 469 cct 471 ||| Sbjct: 72224 cct 72222 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 166 cagccgaggttccagttcatcgtcatgaacaggcg 200 ||||||||||||||||||||||| ||||||||||| Sbjct: 73876 cagccgaggttccagttcatcgttatgaacaggcg 73842
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 176 bits (89), Expect = 5e-41 Identities = 110/117 (94%) Strand = Plus / Plus Query: 1 ggcacgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatc 60 |||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| |||||| Sbjct: 2548159 ggcacgcggctgctcaacctcaccgtgctgcagcgcctcgaccccgccgtcgaggacatc 2548218 Query: 61 ctcatcaccgccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtgg 117 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2548219 ctcatcaccgccgcccacgtcaccctctacgacttcaacatcgacctcaaccagtgg 2548275 Score = 93.7 bits (47), Expect = 6e-16 Identities = 122/147 (82%) Strand = Plus / Plus Query: 208 gataatctcgtggaggatttgttgagtgattttgaatacgaactccagcctccatatttg 267 |||||||| ||||||||| | ||||||||||||||||| ||||| || ||||| |||||| Sbjct: 2548829 gataatctggtggaggatctattgagtgattttgaatatgaacttcaacctccgtatttg 2548888 Query: 268 ttgtatcggaatgccacacaggaagtaaatggcatttggttttataaccaacaggagtgt 327 ||||| || ||||| | || ||||||||||| || ||||| || || ||||| || || Sbjct: 2548889 ttgtaccgcaatgctgcccaagaagtaaatggtatctggttctacaatcaacatgactgc 2548948 Query: 328 gaagctgtcgctagtttgtttggaagg 354 |||||||| || ||| | ||||||||| Sbjct: 2548949 gaagctgttgcaagtctttttggaagg 2548975 Score = 69.9 bits (35), Expect = 9e-09 Identities = 56/63 (88%) Strand = Plus / Plus Query: 409 agtgagtttgaggaattagaggctgttcttacatcctctgccatagatggtccccttgaa 468 |||||||| |||||||| |||||||| | |||||| | ||||||||||||||||||||| Sbjct: 2550120 agtgagttcgaggaattggaggctgtgcctacatctgcagccatagatggtccccttgaa 2550179 Query: 469 cct 471 ||| Sbjct: 2550180 cct 2550182 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 166 cagccgaggttccagttcatcgtcatgaacaggcg 200 ||||||||||||||||||||||| ||||||||||| Sbjct: 2548528 cagccgaggttccagttcatcgttatgaacaggcg 2548562
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 176 bits (89), Expect = 5e-41 Identities = 110/117 (94%) Strand = Plus / Plus Query: 1 ggcacgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatc 60 |||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| |||||| Sbjct: 2557190 ggcacgcggctgctcaacctcaccgtgctgcagcgcctcgaccccgccgtcgaggacatc 2557249 Query: 61 ctcatcaccgccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtgg 117 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2557250 ctcatcaccgccgcccacgtcaccctctacgacttcaacatcgacctcaaccagtgg 2557306 Score = 93.7 bits (47), Expect = 6e-16 Identities = 122/147 (82%) Strand = Plus / Plus Query: 208 gataatctcgtggaggatttgttgagtgattttgaatacgaactccagcctccatatttg 267 |||||||| ||||||||| | ||||||||||||||||| ||||| || ||||| |||||| Sbjct: 2557860 gataatctggtggaggatctattgagtgattttgaatatgaacttcaacctccgtatttg 2557919 Query: 268 ttgtatcggaatgccacacaggaagtaaatggcatttggttttataaccaacaggagtgt 327 ||||| || ||||| | || ||||||||||| || ||||| || || ||||| || || Sbjct: 2557920 ttgtaccgcaatgctgcccaagaagtaaatggtatctggttctacaatcaacatgactgc 2557979 Query: 328 gaagctgtcgctagtttgtttggaagg 354 |||||||| || ||| | ||||||||| Sbjct: 2557980 gaagctgttgcaagtctttttggaagg 2558006 Score = 69.9 bits (35), Expect = 9e-09 Identities = 56/63 (88%) Strand = Plus / Plus Query: 409 agtgagtttgaggaattagaggctgttcttacatcctctgccatagatggtccccttgaa 468 |||||||| |||||||| |||||||| | |||||| | ||||||||||||||||||||| Sbjct: 2559151 agtgagttcgaggaattggaggctgtgcctacatctgcagccatagatggtccccttgaa 2559210 Query: 469 cct 471 ||| Sbjct: 2559211 cct 2559213 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 166 cagccgaggttccagttcatcgtcatgaacaggcg 200 ||||||||||||||||||||||| ||||||||||| Sbjct: 2557559 cagccgaggttccagttcatcgttatgaacaggcg 2557593
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 170 bits (86), Expect = 3e-39 Identities = 107/114 (93%) Strand = Plus / Plus Query: 4 acgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctc 63 ||||| ||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 2779769 acgcggctgctcaacctcaccgtgctgcagcgcctcgaccccgccgtcgaggacatcctc 2779828 Query: 64 atcaccgccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtgg 117 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2779829 atcaccgccgcccacgtcacgctctacgacttcaacatcgagctcaaccagtgg 2779882 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Plus Query: 208 gataatctcgtggaggatttgttgagtgattttgaatacgaactccagcctccatatttg 267 |||||||||||||||||| | |||||||| ||||||| ||||| |||||||| |||||| Sbjct: 2780823 gataatctcgtggaggatctattgagtgactttgaatttgaacttcagcctccgtatttg 2780882 Query: 268 ttgtatcggaatgccacacaggaagtaaatggcatttggttttataaccaacaggagtgt 327 || || || ||||| |||| |||||||| || |||||||||||||||||||| || ||| Sbjct: 2780883 ttataccgaaatgctgcacaagaagtaaacggtatttggttttataaccaacaagactgt 2780942 Query: 328 gaagctgt 335 || ||||| Sbjct: 2780943 gatgctgt 2780950 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Plus Query: 1 ggcacgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatc 60 |||||||| ||||| ||||||||||| ||||||||||| ||| |||||||||| |||||| Sbjct: 1881290 ggcacgcggctgctcaacctcaccgtgctgcagcgcctcgactccgccgtcgaggacatc 1881349 Query: 61 ctcatcaccgccgc 74 |||||||||||||| Sbjct: 1881350 ctcatcaccgccgc 1881363 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 409 agtgagtttgaggaattagaggctgttcttacatcctctgccatagatggtccccttgaa 468 ||||||||||||||||| || ||||||| ||||||| |||| |||||||| ||||||||| Sbjct: 2781446 agtgagtttgaggaattggaagctgttcctacatccgctgctatagatggcccccttgaa 2781505 Query: 469 cct 471 ||| Sbjct: 2781506 cct 2781508 Score = 69.9 bits (35), Expect = 9e-09 Identities = 35/35 (100%) Strand = Plus / Plus Query: 166 cagccgaggttccagttcatcgtcatgaacaggcg 200 ||||||||||||||||||||||||||||||||||| Sbjct: 2780170 cagccgaggttccagttcatcgtcatgaacaggcg 2780204 Score = 69.9 bits (35), Expect = 9e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 117 gagccggaaggacgtggagggatcgctcttcgtggtgaagagg 159 ||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 2780006 gagccggaaggacgtcgagggatcgctgttcgtggtgaagagg 2780048 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 352 aggatactgaatgcttacgccaaagtgcccccaaagccgaaagt 395 |||||| |||||||||||||||||||||| |||||||| ||||| Sbjct: 2781296 aggatattgaatgcttacgccaaagtgcctccaaagcccaaagt 2781339
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 170 bits (86), Expect = 3e-39 Identities = 107/114 (93%) Strand = Plus / Plus Query: 4 acgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctc 63 ||||| ||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 2779713 acgcggctgctcaacctcaccgtgctgcagcgcctcgaccccgccgtcgaggacatcctc 2779772 Query: 64 atcaccgccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtgg 117 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2779773 atcaccgccgcccacgtcacgctctacgacttcaacatcgagctcaaccagtgg 2779826 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Plus Query: 208 gataatctcgtggaggatttgttgagtgattttgaatacgaactccagcctccatatttg 267 |||||||||||||||||| | |||||||| ||||||| ||||| |||||||| |||||| Sbjct: 2780767 gataatctcgtggaggatctattgagtgactttgaatttgaacttcagcctccgtatttg 2780826 Query: 268 ttgtatcggaatgccacacaggaagtaaatggcatttggttttataaccaacaggagtgt 327 || || || ||||| |||| |||||||| || |||||||||||||||||||| || ||| Sbjct: 2780827 ttataccgaaatgctgcacaagaagtaaacggtatttggttttataaccaacaagactgt 2780886 Query: 328 gaagctgt 335 || ||||| Sbjct: 2780887 gatgctgt 2780894 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Plus Query: 1 ggcacgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatc 60 |||||||| ||||| ||||||||||| ||||||||||| ||| |||||||||| |||||| Sbjct: 1881241 ggcacgcggctgctcaacctcaccgtgctgcagcgcctcgactccgccgtcgaggacatc 1881300 Query: 61 ctcatcaccgccgc 74 |||||||||||||| Sbjct: 1881301 ctcatcaccgccgc 1881314 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 409 agtgagtttgaggaattagaggctgttcttacatcctctgccatagatggtccccttgaa 468 ||||||||||||||||| || ||||||| ||||||| |||| |||||||| ||||||||| Sbjct: 2781390 agtgagtttgaggaattggaagctgttcctacatccgctgctatagatggcccccttgaa 2781449 Query: 469 cct 471 ||| Sbjct: 2781450 cct 2781452 Score = 69.9 bits (35), Expect = 9e-09 Identities = 35/35 (100%) Strand = Plus / Plus Query: 166 cagccgaggttccagttcatcgtcatgaacaggcg 200 ||||||||||||||||||||||||||||||||||| Sbjct: 2780114 cagccgaggttccagttcatcgtcatgaacaggcg 2780148 Score = 69.9 bits (35), Expect = 9e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 117 gagccggaaggacgtggagggatcgctcttcgtggtgaagagg 159 ||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 2779950 gagccggaaggacgtcgagggatcgctgttcgtggtgaagagg 2779992 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 352 aggatactgaatgcttacgccaaagtgcccccaaagccgaaagt 395 |||||| |||||||||||||||||||||| |||||||| ||||| Sbjct: 2781240 aggatattgaatgcttacgccaaagtgcctccaaagcccaaagt 2781283
>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145539 Score = 170 bits (86), Expect = 3e-39 Identities = 107/114 (93%) Strand = Plus / Minus Query: 4 acgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctc 63 ||||| ||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 90678 acgcggctgctcaacctcaccgtgctgcagcgcctcgaccccgccgtcgaggacatcctc 90619 Query: 64 atcaccgccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtgg 117 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 90618 atcaccgccgcccacgtcacgctctacgacttcaacatcgagctcaaccagtgg 90565 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Minus Query: 208 gataatctcgtggaggatttgttgagtgattttgaatacgaactccagcctccatatttg 267 |||||||||||||||||| | |||||||| ||||||| ||||| |||||||| |||||| Sbjct: 89624 gataatctcgtggaggatctattgagtgactttgaatttgaacttcagcctccgtatttg 89565 Query: 268 ttgtatcggaatgccacacaggaagtaaatggcatttggttttataaccaacaggagtgt 327 || || || ||||| |||| |||||||| || |||||||||||||||||||| || ||| Sbjct: 89564 ttataccgaaatgctgcacaagaagtaaacggtatttggttttataaccaacaagactgt 89505 Query: 328 gaagctgt 335 || ||||| Sbjct: 89504 gatgctgt 89497 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 409 agtgagtttgaggaattagaggctgttcttacatcctctgccatagatggtccccttgaa 468 ||||||||||||||||| || ||||||| ||||||| |||| |||||||| ||||||||| Sbjct: 89001 agtgagtttgaggaattggaagctgttcctacatccgctgctatagatggcccccttgaa 88942 Query: 469 cct 471 ||| Sbjct: 88941 cct 88939 Score = 69.9 bits (35), Expect = 9e-09 Identities = 41/43 (95%) Strand = Plus / Minus Query: 117 gagccggaaggacgtggagggatcgctcttcgtggtgaagagg 159 ||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 90441 gagccggaaggacgtcgagggatcgctgttcgtggtgaagagg 90399 Score = 69.9 bits (35), Expect = 9e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 166 cagccgaggttccagttcatcgtcatgaacaggcg 200 ||||||||||||||||||||||||||||||||||| Sbjct: 90277 cagccgaggttccagttcatcgtcatgaacaggcg 90243 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 352 aggatactgaatgcttacgccaaagtgcccccaaagccgaaagt 395 |||||| |||||||||||||||||||||| |||||||| ||||| Sbjct: 89151 aggatattgaatgcttacgccaaagtgcctccaaagcccaaagt 89108
>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151878 Score = 170 bits (86), Expect = 3e-39 Identities = 107/114 (93%) Strand = Plus / Plus Query: 4 acgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctc 63 ||||| ||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 148695 acgcggctgctcaacctcaccgtgctgcagcgcctcgaccccgccgtcgaggacatcctc 148754 Query: 64 atcaccgccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtgg 117 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 148755 atcaccgccgcccacgtcacgctctacgacttcaacatcgagctcaaccagtgg 148808 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Plus Query: 208 gataatctcgtggaggatttgttgagtgattttgaatacgaactccagcctccatatttg 267 |||||||||||||||||| | |||||||| ||||||| ||||| |||||||| |||||| Sbjct: 149749 gataatctcgtggaggatctattgagtgactttgaatttgaacttcagcctccgtatttg 149808 Query: 268 ttgtatcggaatgccacacaggaagtaaatggcatttggttttataaccaacaggagtgt 327 || || || ||||| |||| |||||||| || |||||||||||||||||||| || ||| Sbjct: 149809 ttataccgaaatgctgcacaagaagtaaacggtatttggttttataaccaacaagactgt 149868 Query: 328 gaagctgt 335 || ||||| Sbjct: 149869 gatgctgt 149876 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 409 agtgagtttgaggaattagaggctgttcttacatcctctgccatagatggtccccttgaa 468 ||||||||||||||||| || ||||||| ||||||| |||| |||||||| ||||||||| Sbjct: 150372 agtgagtttgaggaattggaagctgttcctacatccgctgctatagatggcccccttgaa 150431 Query: 469 cct 471 ||| Sbjct: 150432 cct 150434 Score = 69.9 bits (35), Expect = 9e-09 Identities = 35/35 (100%) Strand = Plus / Plus Query: 166 cagccgaggttccagttcatcgtcatgaacaggcg 200 ||||||||||||||||||||||||||||||||||| Sbjct: 149096 cagccgaggttccagttcatcgtcatgaacaggcg 149130 Score = 69.9 bits (35), Expect = 9e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 117 gagccggaaggacgtggagggatcgctcttcgtggtgaagagg 159 ||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 148932 gagccggaaggacgtcgagggatcgctgttcgtggtgaagagg 148974 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 352 aggatactgaatgcttacgccaaagtgcccccaaagccgaaagt 395 |||||| |||||||||||||||||||||| |||||||| ||||| Sbjct: 150222 aggatattgaatgcttacgccaaagtgcctccaaagcccaaagt 150265
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 125 bits (63), Expect = 2e-25 Identities = 96/107 (89%) Strand = Plus / Plus Query: 11 tgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctcatcaccg 70 |||| ||| ||||||| || |||||||| |||||||||||||| |||||||||||||||| Sbjct: 8348776 tgctcaacatcaccgtgctccagcgcctcgaccccgccgtcgaggacatcctcatcaccg 8348835 Query: 71 ccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtgg 117 ||| ||||||||||||||||||||| ||| | |||||||||||||| Sbjct: 8348836 ccggccacgtcacgctctacgacttcgacaccaacctcaaccagtgg 8348882 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 1 ggcacgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatc 60 |||||||| ||||| ||||||||||| ||||||||||| |||||||||||| | |||||| Sbjct: 24173781 ggcacgcggctgctcaacctcaccgtgctgcagcgcctcgaccccgccgtcaaggacatc 24173722 Query: 61 ct 62 || Sbjct: 24173721 ct 24173720 Score = 69.9 bits (35), Expect = 9e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 166 cagccgaggttccagttcatcgtcatgaacaggcg 200 ||||||||||||||||||||||||||||||||||| Sbjct: 24173443 cagccgaggttccagttcatcgtcatgaacaggcg 24173409 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 117 gagccggaaggacgtggagggatcgctcttcgtggtgaagagg 159 |||||||||||| |||||||| ||||||||||| || |||||| Sbjct: 8348987 gagccggaaggatgtggaggggtcgctcttcgttgtcaagagg 8349029 Score = 44.1 bits (22), Expect = 0.52 Identities = 40/46 (86%) Strand = Plus / Plus Query: 269 tgtatcggaatgccacacaggaagtaaatggcatttggttttataa 314 ||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct: 8350562 tgtatcgcaatgctgcacaagaagttattggcatttggttttataa 8350607
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0021G06 Length = 137678 Score = 125 bits (63), Expect = 2e-25 Identities = 96/107 (89%) Strand = Plus / Plus Query: 11 tgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctcatcaccg 70 |||| ||| ||||||| || |||||||| |||||||||||||| |||||||||||||||| Sbjct: 53874 tgctcaacatcaccgtgctccagcgcctcgaccccgccgtcgaggacatcctcatcaccg 53933 Query: 71 ccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtgg 117 ||| ||||||||||||||||||||| ||| | |||||||||||||| Sbjct: 53934 ccggccacgtcacgctctacgacttcgacaccaacctcaaccagtgg 53980 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 117 gagccggaaggacgtggagggatcgctcttcgtggtgaagagg 159 |||||||||||| |||||||| ||||||||||| || |||||| Sbjct: 54085 gagccggaaggatgtggaggggtcgctcttcgttgtcaagagg 54127 Score = 44.1 bits (22), Expect = 0.52 Identities = 40/46 (86%) Strand = Plus / Plus Query: 269 tgtatcggaatgccacacaggaagtaaatggcatttggttttataa 314 ||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct: 55660 tgtatcgcaatgctgcacaagaagttattggcatttggttttataa 55705
>dbj|AK064254.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-C08, full insert sequence Length = 1327 Score = 109 bits (55), Expect = 1e-20 Identities = 61/63 (96%) Strand = Plus / Plus Query: 55 gacatcctcatcaccgccgcacacgtcacgctctacgacttcaacatcgacctcaaccag 114 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 29 gacatcctcatcaccgccgcccacgtcaccctctacgacttcaacatcgacctcaaccag 88 Query: 115 tgg 117 ||| Sbjct: 89 tgg 91 Score = 87.7 bits (44), Expect = 4e-14 Identities = 107/128 (83%) Strand = Plus / Plus Query: 208 gataatctcgtggaggatttgttgagtgattttgaatacgaactccagcctccatatttg 267 |||||||| ||||||||| | ||||||||||||||||| ||||| || ||||| |||||| Sbjct: 645 gataatctggtggaggatctattgagtgattttgaatatgaacttcaacctccgtatttg 704 Query: 268 ttgtatcggaatgccacacaggaagtaaatggcatttggttttataaccaacaggagtgt 327 ||||| || ||||| | || ||||||||||| || ||||| || || ||||| || || Sbjct: 705 ttgtaccgcaatgctgcccaagaagtaaatggtatctggttctacaatcaacatgactgc 764 Query: 328 gaagctgt 335 |||||||| Sbjct: 765 gaagctgt 772 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 166 cagccgaggttccagttcatcgtcatgaacaggcg 200 ||||||||||||||||||||||| ||||||||||| Sbjct: 344 cagccgaggttccagttcatcgttatgaacaggcg 378
>emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128619 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Plus Query: 1 ggcacgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatc 60 |||||||| ||||| ||||||||||| ||||||||||| ||| |||||||||| |||||| Sbjct: 75980 ggcacgcggctgctcaacctcaccgtgctgcagcgcctcgactccgccgtcgaggacatc 76039 Query: 61 ctcatcaccgccgc 74 |||||||||||||| Sbjct: 76040 ctcatcaccgccgc 76053
>emb|AL928752.2|CNS08CBP Oryza sativa chromosome 12, . BAC OSJNBb0034E23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 107247 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Minus Query: 1 ggcacgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatc 60 |||||||| ||||| ||||||||||| ||||||||||| ||| |||||||||| |||||| Sbjct: 86931 ggcacgcggctgctcaacctcaccgtgctgcagcgcctcgactccgccgtcgaggacatc 86872 Query: 61 ctcatcaccgccgc 74 |||||||||||||| Sbjct: 86871 ctcatcaccgccgc 86858
>gb|BT014373.1| Lycopersicon esculentum clone 133661F, mRNA sequence Length = 1530 Score = 83.8 bits (42), Expect = 6e-13 Identities = 117/142 (82%) Strand = Plus / Plus Query: 173 ggttccagttcatcgtcatgaacaggcgcaataccgataatctcgtggaggatttgttga 232 |||| ||||| || || |||||| | || ||||| |||||| | ||||||||| ||||| Sbjct: 311 ggtttcagtttattgttatgaaccgccgaaatacagataatttggtggaggatctgttgg 370 Query: 233 gtgattttgaatacgaactccagcctccatatttgttgtatcggaatgccacacaggaag 292 | ||||||||||| || |||||| |||||||||||||||||| ||||| | || |||| Sbjct: 371 gagattttgaatatgagatccagcttccatatttgttgtatcgaaatgcttcccaagaag 430 Query: 293 taaatggcatttggttttataa 314 | ||||| || ||||||||||| Sbjct: 431 ttaatgggatatggttttataa 452
>ref|XM_470346.1| Oryza sativa (japonica cultivar-group), mRNA Length = 432 Score = 77.8 bits (39), Expect = 4e-11 Identities = 144/179 (80%) Strand = Plus / Plus Query: 16 aacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctcatcaccgccgca 75 |||||||| || |||| ||||| ||||||||||||| ||||||||||||| |||||| Sbjct: 91 aacctcacggtgctgcgtcgcctcgaccccgccgtcgccgacatcctcatcatcgccgcg 150 Query: 76 cacgtcacgctctacgacttcaacatcgacctcaaccagtggagccggaaggacgtggag 135 |||||| |||||| |||| || | || || |||| |||||||||| | |||||| Sbjct: 151 cacgtcgtcctctacagcttcgacgacaacatccaccaatggagccggaggcctgtggag 210 Query: 136 ggatcgctcttcgtggtgaagaggaactcacagccgaggttccagttcatcgtcatgaa 194 || ||||||||||| || ||||||||| | || || || |||||||| || |||||||| Sbjct: 211 gggtcgctcttcgtcgtcaagaggaacacccaacccagattccagtttattgtcatgaa 269
>dbj|AP003846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1710_H11 Length = 136107 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 1 ggcacgcgcctgcttaacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatc 60 |||||||| ||||| ||||||||||| ||||||||||| |||||||||||| | |||||| Sbjct: 107196 ggcacgcggctgctcaacctcaccgtgctgcagcgcctcgaccccgccgtcaaggacatc 107137 Query: 61 ct 62 || Sbjct: 107136 ct 107135 Score = 69.9 bits (35), Expect = 9e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 166 cagccgaggttccagttcatcgtcatgaacaggcg 200 ||||||||||||||||||||||||||||||||||| Sbjct: 106858 cagccgaggttccagttcatcgtcatgaacaggcg 106824
>gb|DQ222494.1| Solanum tuberosum clone 103A04 unknown mRNA Length = 1492 Score = 65.9 bits (33), Expect = 1e-07 Identities = 93/113 (82%) Strand = Plus / Plus Query: 202 aataccgataatctcgtggaggatttgttgagtgattttgaatacgaactccagcctcca 261 ||||| |||||| | ||||||||| ||||| | ||||||||||| || |||||| |||| Sbjct: 299 aatacagataatttggtggaggatctgttgggagattttgaatatgagatccagcttcca 358 Query: 262 tatttgttgtatcggaatgccacacaggaagtaaatggcatttggttttataa 314 |||||| ||||||| ||||| | || ||||| || || || ||||||||||| Sbjct: 359 tatttgctgtatcgaaatgcttcccaagaagttaacgggatatggttttataa 411
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 16 aacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctcatcaccgccgca 75 |||||||| || |||| ||||| ||||||||||||| ||||||||||||| |||||| Sbjct: 34869984 aacctcacggtgctgcgtcgcctcgaccccgccgtcgccgacatcctcatcatcgccgcg 34869925 Query: 76 cacgtc 81 |||||| Sbjct: 34869924 cacgtc 34869919
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 16 aacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctcatcaccgccgca 75 |||||||| || |||| ||||| ||||||||||||| ||||||||||||| |||||| Sbjct: 34960056 aacctcacggtgctgcgtcgcctcgaccccgccgtcgccgacatcctcatcatcgccgcg 34959997 Query: 76 cacgtc 81 |||||| Sbjct: 34959996 cacgtc 34959991
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence Length = 171376 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 16 aacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctcatcaccgccgca 75 |||||||| || |||| ||||| ||||||||||||| ||||||||||||| |||||| Sbjct: 145496 aacctcacggtgctgcgtcgcctcgaccccgccgtcgccgacatcctcatcatcgccgcg 145555 Query: 76 cacgtc 81 |||||| Sbjct: 145556 cacgtc 145561
>dbj|AK068294.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013148J04, full insert sequence Length = 1873 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 16 aacctcaccgtcctgcagcgccttgaccccgccgtcgaagacatcctcatcaccgccgca 75 |||||||| || |||| ||||| ||||||||||||| ||||||||||||| |||||| Sbjct: 211 aacctcacggtgctgcgtcgcctcgaccccgccgtcgccgacatcctcatcatcgccgcg 270 Query: 76 cacgtc 81 |||||| Sbjct: 271 cacgtc 276
>ref|NM_100710.2| Arabidopsis thaliana unknown protein AT1G08370 mRNA, complete cds Length = 1453 Score = 46.1 bits (23), Expect = 0.13 Identities = 68/83 (81%) Strand = Plus / Plus Query: 58 atcctcatcaccgccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtgg 117 ||||||||||| ||||| || ||||| |||| || |||||||| || |||| ||| ||| Sbjct: 262 atcctcatcacagccgctcatgtcactttctatgaattcaacattgagctcagccaatgg 321 Query: 118 agccggaaggacgtggagggatc 140 || || |||||||| || ||||| Sbjct: 322 agtcgtaaggacgttgaaggatc 344 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gaagtaaatggcatttggtt 308 |||||||||||||||||||| Sbjct: 493 gaagtaaatggcatttggtt 512
>gb|AE012462.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 370 of 460 of the complete genome Length = 12484 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 21 caccgtcctgcagcgccttgacc 43 ||||||||||||||||||||||| Sbjct: 9618 caccgtcctgcagcgccttgacc 9640
>emb|BX814295.1|CNS0ABYQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB66ZF10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1327 Score = 46.1 bits (23), Expect = 0.13 Identities = 68/83 (81%) Strand = Plus / Plus Query: 58 atcctcatcaccgccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtgg 117 ||||||||||| ||||| || ||||| |||| || |||||||| || |||| ||| ||| Sbjct: 180 atcctcatcacagccgctcatgtcactttctatgaattcaacattgagctcagccaatgg 239 Query: 118 agccggaaggacgtggagggatc 140 || || |||||||| || ||||| Sbjct: 240 agtcgtaaggacgttgaaggatc 262 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gaagtaaatggcatttggtt 308 |||||||||||||||||||| Sbjct: 411 gaagtaaatggcatttggtt 430
>emb|BX815594.1|CNS0ABE0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS75ZA01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1308 Score = 46.1 bits (23), Expect = 0.13 Identities = 68/83 (81%) Strand = Plus / Plus Query: 58 atcctcatcaccgccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtgg 117 ||||||||||| ||||| || ||||| |||| || |||||||| || |||| ||| ||| Sbjct: 201 atcctcatcacagccgctcatgtcactttctatgaattcaacattgagctcagccaatgg 260 Query: 118 agccggaaggacgtggagggatc 140 || || |||||||| || ||||| Sbjct: 261 agtcgtaaggacgttgaaggatc 283 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gaagtaaatggcatttggtt 308 |||||||||||||||||||| Sbjct: 432 gaagtaaatggcatttggtt 451
>gb|AF007109.1|AF007109 Arabidopsis thaliana mRNA, similar to yeast dcp1, complete cds Length = 1358 Score = 46.1 bits (23), Expect = 0.13 Identities = 68/83 (81%) Strand = Plus / Plus Query: 58 atcctcatcaccgccgcacacgtcacgctctacgacttcaacatcgacctcaaccagtgg 117 ||||||||||| ||||| || ||||| |||| || |||||||| || |||| ||| ||| Sbjct: 150 atcctcatcacagccgctcatgtcactttctatgaattcaacattgagctcagccaatgg 209 Query: 118 agccggaaggacgtggagggatc 140 || || |||||||| || ||||| Sbjct: 210 agtcgtaaggacgttgaaggatc 232 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gaagtaaatggcatttggtt 308 |||||||||||||||||||| Sbjct: 381 gaagtaaatggcatttggtt 400
>ref|XM_650509.1| Entamoeba histolytica HM-1:IMSS malate dehydrogenase (26.t00021) partial mRNA Length = 1113 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 474 tccatcagctacagctgtagtttctg 499 ||||||| |||||||||||||||||| Sbjct: 264 tccatcaactacagctgtagtttctg 239
>gb|AY325584.1| Uncultured bacterium clone GE12 putative dissimilatory membrane-bound nitrate reductase (narG) gene, partial cds Length = 650 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 ccgtcctgcagcgccttgacc 43 ||||||||||||||||||||| Sbjct: 341 ccgtcctgcagcgccttgacc 321
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 ccgtcctgcagcgccttgacc 43 ||||||||||||||||||||| Sbjct: 875588 ccgtcctgcagcgccttgacc 875568
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tgagtgattttgaatacgaa 249 |||||||||||||||||||| Sbjct: 797062 tgagtgattttgaatacgaa 797043
>ref|XM_873334.1| PREDICTED: Bos taurus similar to influenza virus NS1A binding protein isoform 2, transcript variant 9 (LOC514940), mRNA Length = 3335 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 ttgaacctcctccatcagct 483 |||||||||||||||||||| Sbjct: 617 ttgaacctcctccatcagct 598
>ref|XM_873133.1| PREDICTED: Bos taurus similar to influenza virus NS1A binding protein isoform 2, transcript variant 7 (LOC514940), mRNA Length = 2745 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 ttgaacctcctccatcagct 483 |||||||||||||||||||| Sbjct: 1197 ttgaacctcctccatcagct 1178
>ref|XM_873032.1| PREDICTED: Bos taurus similar to influenza virus NS1A binding protein isoform 2, transcript variant 6 (LOC514940), mRNA Length = 3655 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 ttgaacctcctccatcagct 483 |||||||||||||||||||| Sbjct: 991 ttgaacctcctccatcagct 972
>ref|XM_592860.2| PREDICTED: Bos taurus similar to influenza virus NS1A binding protein isoform 2, transcript variant 1 (LOC514940), mRNA Length = 3917 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 ttgaacctcctccatcagct 483 |||||||||||||||||||| Sbjct: 1199 ttgaacctcctccatcagct 1180
>ref|XM_872843.1| PREDICTED: Bos taurus similar to influenza virus NS1A binding protein isoform 2, transcript variant 5 (LOC514940), mRNA Length = 3657 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 ttgaacctcctccatcagct 483 |||||||||||||||||||| Sbjct: 991 ttgaacctcctccatcagct 972
>ref|XM_872639.1| PREDICTED: Bos taurus similar to influenza virus NS1A binding protein isoform 2, transcript variant 3 (LOC514940), mRNA Length = 1826 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 ttgaacctcctccatcagct 483 |||||||||||||||||||| Sbjct: 991 ttgaacctcctccatcagct 972
>ref|XM_421546.1| PREDICTED: Gallus gallus ankyrin 3 (CHANK3), mRNA Length = 16806 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gaagaggaactcacagccga 172 |||||||||||||||||||| Sbjct: 9808 gaagaggaactcacagccga 9827
>gb|AE009180.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 206 of 256 of the complete sequence Length = 12009 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ccgtcgaagacatcctcatc 66 |||||||||||||||||||| Sbjct: 8187 ccgtcgaagacatcctcatc 8206
>gb|AC162934.6| Mus musculus BAC clone RP23-131P21 from chromosome 13, complete sequence Length = 223665 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 426 agaggctgttcttacatcctctgccata 453 ||||||||||||| ||||||||||||| Sbjct: 136040 agaggctgttctttgatcctctgccata 136013
>gb|AC122225.4| Mus musculus BAC clone RP23-131E21 from 9, complete sequence Length = 209737 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ccacacaggaagtaaatggc 300 |||||||||||||||||||| Sbjct: 64763 ccacacaggaagtaaatggc 64782
>gb|AC122822.3| Mus musculus BAC clone RP23-202A13 from 9, complete sequence Length = 191414 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ccacacaggaagtaaatggc 300 |||||||||||||||||||| Sbjct: 120379 ccacacaggaagtaaatggc 120398
>gb|AC116178.4| Mus musculus BAC clone RP23-28O18 from 14, complete sequence Length = 195306 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 289 gaagtaaatggcatttggttttat 312 ||||||| |||||||||||||||| Sbjct: 82523 gaagtaagtggcatttggttttat 82500
>gb|AC149304.11| Medicago truncatula clone mth2-76g4, complete sequence Length = 114831 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 473 ctccatcagctacagctgta 492 |||||||||||||||||||| Sbjct: 89135 ctccatcagctacagctgta 89154
>emb|AL355531.16| Human DNA sequence from clone RP11-300B2 on chromosome 10 Contains the 5' end of the MGMT gene for O-6-methylguanine-DNA methyltransferase, complete sequence Length = 213887 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 ggtgaagaggaactcacagc 169 |||||||||||||||||||| Sbjct: 189203 ggtgaagaggaactcacagc 189222
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 tcctgcagcgccttgaccccgccg 49 ||||||||||||||||| |||||| Sbjct: 319084 tcctgcagcgccttgacgccgccg 319061
>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 3/6 Length = 317511 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tgagtgattttgaatacgaa 249 |||||||||||||||||||| Sbjct: 95957 tgagtgattttgaatacgaa 95938
>gb|AC067931.16| Homo sapiens chromosome 8, clone RP11-642A1, complete sequence Length = 206466 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 caaagtgcccccaaagccga 391 |||||||||||||||||||| Sbjct: 114862 caaagtgcccccaaagccga 114843
>emb|AL954821.10| Mouse DNA sequence from clone RP23-415G6 on chromosome 11, complete sequence Length = 97532 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 ttgaacctcctccatcagct 483 |||||||||||||||||||| Sbjct: 2882 ttgaacctcctccatcagct 2901
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 caacatcgacctcaaccagt 115 |||||||||||||||||||| Sbjct: 6923162 caacatcgacctcaaccagt 6923181
>gb|AC116618.4| Homo sapiens BAC clone RP11-98L17 from 4, complete sequence Length = 153040 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 tctataaaaagtgagtttga 419 |||||||||||||||||||| Sbjct: 29295 tctataaaaagtgagtttga 29276
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ccgtcgaagacatcctcatc 66 |||||||||||||||||||| Sbjct: 2285972 ccgtcgaagacatcctcatc 2285991
>gb|AC093749.3| Homo sapiens BAC clone RP11-30B7 from 4, complete sequence Length = 163102 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 tctataaaaagtgagtttga 419 |||||||||||||||||||| Sbjct: 70542 tctataaaaagtgagtttga 70561
>gb|AC008822.7| Homo sapiens chromosome 5 clone CTD-2129H18, complete sequence Length = 68754 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 gtagtttctgatacccctga 509 |||||||||||||||||||| Sbjct: 8709 gtagtttctgatacccctga 8728
>emb|CR386867.1| Gallus gallus finished cDNA, clone ChEST39n10 Length = 2075 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gaagaggaactcacagccga 172 |||||||||||||||||||| Sbjct: 429 gaagaggaactcacagccga 448
>gb|AC024587.5| Homo sapiens chromosome 5 clone RP11-252I13, complete sequence Length = 178492 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 490 gtagtttctgatacccctga 509 |||||||||||||||||||| Sbjct: 119367 gtagtttctgatacccctga 119348
>gb|AC006932.8|AC006932 Genomic sequence for Arabidopsis thaliana BAC T27G7 from chromosome I, complete sequence Length = 89479 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gaagtaaatggcatttggtt 308 |||||||||||||||||||| Sbjct: 19821 gaagtaaatggcatttggtt 19840
>dbj|AB080640.1| Anguilla japonica guanylin mRNA for preproguanylin, complete cds Length = 1009 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 gtggagggatcgctcttcgt 149 |||||||||||||||||||| Sbjct: 23 gtggagggatcgctcttcgt 4
>emb|X75448.1|GVBMPCP Grapevine virus B genomic RNA for MP and CP genes Length = 7599 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 cctgcttaacctcaccgtcc 28 |||||||||||||||||||| Sbjct: 5835 cctgcttaacctcaccgtcc 5816 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,712,390 Number of Sequences: 3902068 Number of extensions: 4712390 Number of successful extensions: 86544 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86044 Number of HSP's gapped (non-prelim): 500 length of query: 601 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 578 effective length of database: 17,143,297,704 effective search space: 9908826072912 effective search space used: 9908826072912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)