ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags37f07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_471682.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2580 Score = 268 bits (135), Expect = 8e-69 Identities = 231/264 (87%), Gaps = 6/264 (2%) Strand = Plus / Plus Query: 1 tgcctgtaaataancgagcaactgcagcaggcttggatggttcagtgcccaagcctgggc 60 ||||||||||||| ||||||||| |||||| || ||||| ||||| ||||| ||||| | Sbjct: 1982 tgcctgtaaataatcgagcaactttagcaggtttcgatggctcagtacccaaacctggac 2041 Query: 61 ttgaagtcaacttagttgatgcaattccttgccggatagcatttgagaggggcaaagagc 120 ||||||| |||||||||||||| | ||||| || ||||||||||||||||||||||| | Sbjct: 2042 ttgaagttaacttagttgatgcggtcccttgtcgaatagcatttgagaggggcaaagaac 2101 Query: 121 gtcacttcagctttttagctctatctaatggaacttctgggtggattctccttttagaag 180 | |||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 2102 gccacttctgctttttggctctatctaatggaacttctgggtggattcttcttttagaag 2161 Query: 181 aattaccac------agcaacgtggaattgttcgtgtcaccgnccccttggctggatctg 234 ||||||| | | |||||||||||||||||||||| | ||||||||||| |||| Sbjct: 2162 aattacctctcaaggaaaaacgtggaattgttcgtgtcacagctcccttggctgggtctg 2221 Query: 235 atccaagaatagatgaaaagcatg 258 |||||||||||||||||||||||| Sbjct: 2222 atccaagaatagatgaaaagcatg 2245
>gb|BT016558.1| Zea mays clone Contig391 mRNA sequence Length = 1223 Score = 161 bits (81), Expect = 1e-36 Identities = 190/227 (83%), Gaps = 6/227 (2%) Strand = Plus / Plus Query: 38 tggttcagtgcccaagcctgggcttgaagtcaacttagttgatgcaattccttgccggat 97 ||||||||| || || ||||||||||||||||||||||| || || ||||||| || || Sbjct: 505 tggttcagttcctaaacctgggcttgaagtcaacttagtcgacgctgttccttgtcgaat 564 Query: 98 agcatttgagaggggcaaagagcgtcacttcagctttttagctctatctaatggaacttc 157 ||||||||||||||||||||| || |||||| |||||||||| || || |||||||||| Sbjct: 565 agcatttgagaggggcaaagaacggcacttctgctttttagccatagctcatggaacttc 624 Query: 158 tgggtggattctccttttagaagaattacc------acagcaacgtggaattgttcgtgt 211 ||| |||||||| ||| ||||||||||||| || | |||| |||||||| ||||| Sbjct: 625 tggttggattcttcttctagaagaattacctctaaaacgggaacgaggaattgtccgtgt 684 Query: 212 caccgnccccttggctggatctgatccaagaatagatgaaaagcatg 258 || | || ||||| ||||||||||||||||||||| |||||||| Sbjct: 685 catggcacctttggcaggatctgatccaagaatagatacaaagcatg 731
>gb|AY108504.1| Zea mays PCO117880 mRNA sequence Length = 1392 Score = 161 bits (81), Expect = 1e-36 Identities = 190/227 (83%), Gaps = 6/227 (2%) Strand = Plus / Plus Query: 38 tggttcagtgcccaagcctgggcttgaagtcaacttagttgatgcaattccttgccggat 97 ||||||||| || || ||||||||||||||||||||||| || || ||||||| || || Sbjct: 438 tggttcagttcctaaacctgggcttgaagtcaacttagtcgacgctgttccttgtcgaat 497 Query: 98 agcatttgagaggggcaaagagcgtcacttcagctttttagctctatctaatggaacttc 157 ||||||||||||||||||||| || |||||| |||||||||| || || |||||||||| Sbjct: 498 agcatttgagaggggcaaagaacggcacttctgctttttagccatagctcatggaacttc 557 Query: 158 tgggtggattctccttttagaagaattacc------acagcaacgtggaattgttcgtgt 211 ||| |||||||| ||| ||||||||||||| || | |||| |||||||| ||||| Sbjct: 558 tggttggattcttcttctagaagaattacctctaaaacgggaacgaggaattgtccgtgt 617 Query: 212 caccgnccccttggctggatctgatccaagaatagatgaaaagcatg 258 || | || ||||| ||||||||||||||||||||| |||||||| Sbjct: 618 catggcacctttggcaggatctgatccaagaatagatacaaagcatg 664
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 157 bits (79), Expect = 2e-35 Identities = 146/169 (86%), Gaps = 6/169 (3%) Strand = Plus / Plus Query: 74 agttgatgcaattccttgccggatagcatttgagaggggcaaagagcgtcacttcagctt 133 ||||||||| | ||||| || ||||||||||||||||||||||| || |||||| |||| Sbjct: 13266056 agttgatgcggtcccttgtcgaatagcatttgagaggggcaaagaacgccacttctgctt 13266115 Query: 134 tttagctctatctaatggaacttctgggtggattctccttttagaagaattaccac---- 189 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 13266116 tttggctctatctaatggaacttctgggtggattcttcttttagaagaattacctctcaa 13266175 Query: 190 --agcaacgtggaattgttcgtgtcaccgnccccttggctggatctgat 236 | |||||||||||||||||||||| | ||||||||||| |||||| Sbjct: 13266176 ggaaaaacgtggaattgttcgtgtcacagctcccttggctgggtctgat 13266224 Score = 71.9 bits (36), Expect = 1e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 1 tgcctgtaaataancgagcaactgcagcaggcttggatggttcagtgcccaagcctgggc 60 ||||||||||||| ||||||||| |||||| || ||||| ||||| ||||| ||||| | Sbjct: 13265867 tgcctgtaaataatcgagcaactttagcaggtttcgatggctcagtacccaaacctggac 13265926 Query: 61 ttgaagtcaacttag 75 ||||||| ||||||| Sbjct: 13265927 ttgaagttaacttag 13265941 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 237 ccaagaatagatgaaaagcatg 258 |||||||||||||||||||||| Sbjct: 13266360 ccaagaatagatgaaaagcatg 13266381
>emb|AL662966.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035B13, complete sequence Length = 145234 Score = 157 bits (79), Expect = 2e-35 Identities = 146/169 (86%), Gaps = 6/169 (3%) Strand = Plus / Plus Query: 74 agttgatgcaattccttgccggatagcatttgagaggggcaaagagcgtcacttcagctt 133 ||||||||| | ||||| || ||||||||||||||||||||||| || |||||| |||| Sbjct: 38155 agttgatgcggtcccttgtcgaatagcatttgagaggggcaaagaacgccacttctgctt 38214 Query: 134 tttagctctatctaatggaacttctgggtggattctccttttagaagaattaccac---- 189 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 38215 tttggctctatctaatggaacttctgggtggattcttcttttagaagaattacctctcaa 38274 Query: 190 --agcaacgtggaattgttcgtgtcaccgnccccttggctggatctgat 236 | |||||||||||||||||||||| | ||||||||||| |||||| Sbjct: 38275 ggaaaaacgtggaattgttcgtgtcacagctcccttggctgggtctgat 38323 Score = 71.9 bits (36), Expect = 1e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 1 tgcctgtaaataancgagcaactgcagcaggcttggatggttcagtgcccaagcctgggc 60 ||||||||||||| ||||||||| |||||| || ||||| ||||| ||||| ||||| | Sbjct: 37966 tgcctgtaaataatcgagcaactttagcaggtttcgatggctcagtacccaaacctggac 38025 Query: 61 ttgaagtcaacttag 75 ||||||| ||||||| Sbjct: 38026 ttgaagttaacttag 38040 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 237 ccaagaatagatgaaaagcatg 258 |||||||||||||||||||||| Sbjct: 38459 ccaagaatagatgaaaagcatg 38480
>gb|AF192204.1|AF192204 Chironomus melanescens cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 596 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 ctgatccaagaatagatgaaa 252 ||||||||||||||||||||| Sbjct: 406 ctgatccaagaatagatgaaa 386
>ref|XM_537223.2| PREDICTED: Canis familiaris similar to SET and MYND domain containing 3 (LOC480101), mRNA Length = 1010 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gattctccttttagaagaat 183 |||||||||||||||||||| Sbjct: 756 gattctccttttagaagaat 775
>emb|AL109837.22|HS1128N12 Human DNA sequence from clone RP5-1128N12 on chromosome 20 Contains the PGAM3P gene for phosphoglycerate mutase 3 pseudogene and a CpG island, complete sequence Length = 139214 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 cccttggctggatctgatcc 238 |||||||||||||||||||| Sbjct: 33747 cccttggctggatctgatcc 33766
>emb|CR735124.10| Zebrafish DNA sequence from clone CH211-186G12 in linkage group 21, complete sequence Length = 149968 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 ggaacttctgggtggattct 169 |||||||||||||||||||| Sbjct: 149874 ggaacttctgggtggattct 149893
>gb|AC151278.2| Mus musculus BAC clone RP24-164I15 from chromosome 17, complete sequence Length = 175960 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 tgaagtcaacttagttgatgcaat 85 |||||||||||||||||| ||||| Sbjct: 172807 tgaagtcaacttagttgaggcaat 172830
>emb|BX813318.3| Mouse DNA sequence from clone RP23-123N16 on chromosome 2, complete sequence Length = 66128 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 tccttttagaagaattacca 188 |||||||||||||||||||| Sbjct: 49314 tccttttagaagaattacca 49333
>emb|AL928952.15| Zebrafish DNA sequence from clone CH211-225G23, complete sequence Length = 182212 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ggaacttctgggtggattct 169 |||||||||||||||||||| Sbjct: 95 ggaacttctgggtggattct 76
>gb|AC154192.3| Mus musculus BAC clone RP24-70F14 from chromosome 17, complete sequence Length = 234088 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 tgaagtcaacttagttgatgcaat 85 |||||||||||||||||| ||||| Sbjct: 159139 tgaagtcaacttagttgaggcaat 159116 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,179,905 Number of Sequences: 3902068 Number of extensions: 2179905 Number of successful extensions: 44259 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44227 Number of HSP's gapped (non-prelim): 32 length of query: 262 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 240 effective length of database: 17,147,199,772 effective search space: 4115327945280 effective search space used: 4115327945280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
