ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags36p21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 1100 bits (555), Expect = 0.0 Identities = 578/588 (98%) Strand = Plus / Minus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 79852 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggtttcagacttggta 79793 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 79792 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattcggaaggtctac 79733 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79732 aggaagataaaaaaataagggattgtatcaagaactatatacaaaagaataggaaaaagg 79673 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79672 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 79613 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 79612 tggactcaggttcaagttccgaagtaattacacatatagaaatccaaaaagaaatcgata 79553 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79552 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 79493 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79492 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 79433 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79432 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 79373 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79372 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 79313 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79312 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 79265
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 926 bits (467), Expect = 0.0 Identities = 556/588 (94%) Strand = Plus / Minus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 80096 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 80037 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80036 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 79977 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 79976 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 79917 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 79916 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 79857 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79856 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 79797 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 79796 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 79737 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 79736 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 79677 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 79676 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctt 79617 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79616 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 79557 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 79556 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 79509
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 926 bits (467), Expect = 0.0 Identities = 556/588 (94%) Strand = Plus / Minus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 80096 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 80037 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80036 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 79977 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 79976 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 79917 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 79916 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 79857 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79856 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 79797 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 79796 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 79737 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 79736 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 79677 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 79676 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctt 79617 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79616 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 79557 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 79556 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 79509
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 926 bits (467), Expect = 0.0 Identities = 556/588 (94%) Strand = Plus / Minus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 80039 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 79980 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79979 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 79920 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 79919 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 79860 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 79859 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 79800 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79799 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 79740 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 79739 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 79680 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 79679 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 79620 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 79619 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctt 79560 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79559 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 79500 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 79499 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 79452
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 926 bits (467), Expect = 0.0 Identities = 556/588 (94%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 70658 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 70717 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70718 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 70777 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 70778 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 70837 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 70838 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 70897 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70898 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 70957 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 70958 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 71017 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 71018 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 71077 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 71078 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctt 71137 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71138 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 71197 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 71198 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 71245
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 926 bits (467), Expect = 0.0 Identities = 556/588 (94%) Strand = Plus / Minus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 78276 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 78217 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78216 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 78157 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 78156 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 78097 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 78096 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 78037 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78036 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 77977 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 77976 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 77917 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 77916 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 77857 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 77856 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctt 77797 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77796 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 77737 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 77736 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 77689
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 926 bits (467), Expect = 0.0 Identities = 556/588 (94%) Strand = Plus / Minus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 12340 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 12281 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12280 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 12221 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 12220 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 12161 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 12160 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 12101 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12100 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 12041 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 12040 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 11981 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 11980 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 11921 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 11920 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctt 11861 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11860 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 11801 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 11800 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 11753
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 926 bits (467), Expect = 0.0 Identities = 556/588 (94%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 9189585 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 9189644 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9189645 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 9189704 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 9189705 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 9189764 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 9189765 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 9189824 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9189825 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 9189884 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 9189885 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 9189944 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 9189945 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 9190004 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 9190005 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctt 9190064 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9190065 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 9190124 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 9190125 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 9190172 Score = 926 bits (467), Expect = 0.0 Identities = 556/588 (94%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 9112632 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 9112691 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9112692 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 9112751 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 9112752 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 9112811 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 9112812 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 9112871 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9112872 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 9112931 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 9112932 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 9112991 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 9112992 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 9113051 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 9113052 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctt 9113111 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9113112 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 9113171 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 9113172 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 9113219 Score = 69.9 bits (35), Expect = 9e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatc 40 |||| |||||||||||||||||||||||||||||||||| Sbjct: 9212519 aaaaaatagaatagaaaaatatgggacaaaaaataaatc 9212481
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 926 bits (467), Expect = 0.0 Identities = 556/588 (94%) Strand = Plus / Minus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 10371884 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 10371825 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10371824 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 10371765 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 10371764 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 10371705 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 10371704 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 10371645 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10371644 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 10371585 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 10371584 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 10371525 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 10371524 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 10371465 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 10371464 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctt 10371405 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10371404 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 10371345 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 10371344 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 10371297 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tacaaaagaataggaaaaag 180 |||||||||||||||||||| Sbjct: 12236939 tacaaaagaataggaaaaag 12236920
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 926 bits (467), Expect = 0.0 Identities = 556/588 (94%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 14453603 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 14453662 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14453663 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 14453722 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 14453723 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 14453782 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 14453783 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 14453842 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14453843 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 14453902 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 14453903 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 14453962 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 14453963 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 14454022 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 14454023 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctt 14454082 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14454083 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 14454142 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 14454143 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 14454190 Score = 852 bits (430), Expect = 0.0 Identities = 551/590 (93%), Gaps = 4/590 (0%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 11893811 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 11893870 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11893871 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 11893930 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 11893931 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 11893990 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 11893991 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 11894050 Query: 242 -tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgat 300 |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 11894051 atggactcaggctcaagttccgaagtaattacacata--gaaattcaaaaagaaatcgat 11894108 Query: 301 acgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatc 360 || ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 11894109 acaatccatgtcataatacatattggattccccaatttattaaagaaaaaaggagcaatc 11894168 Query: 361 gaagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatatt 420 |||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 11894169 gaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatatt 11894228 Query: 421 tctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagct 480 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 11894229 gggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagct 11894288 Query: 481 ttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaact 540 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 11894289 ttccaattaaaaaatagagtttcattccaaaaggcaatgaaaaaagccattgaattaact 11894348 Query: 541 -aaaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 |||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 11894349 aaaaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 11894398 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 aatatagaatagaaaaatat 23 |||||||||||||||||||| Sbjct: 11347840 aatatagaatagaaaaatat 11347821
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 926 bits (467), Expect = 0.0 Identities = 556/588 (94%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 145406 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 145465 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145466 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 145525 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 145526 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 145585 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 145586 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 145645 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145646 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 145705 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 145706 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 145765 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 145766 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 145825 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 145826 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctt 145885 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145886 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 145945 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 145946 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 145993
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 926 bits (467), Expect = 0.0 Identities = 556/588 (94%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 53168 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 53227 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53228 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 53287 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 53288 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 53347 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 53348 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 53407 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53408 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 53467 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 53468 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 53527 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 53528 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 53587 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 53588 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctt 53647 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53648 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 53707 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 53708 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 53755
>dbj|AK072149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128P04, full insert sequence Length = 2475 Score = 926 bits (467), Expect = 0.0 Identities = 556/588 (94%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 820 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 879 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 880 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 939 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 940 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 999 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 1000 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 1059 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1060 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 1119 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1120 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 1179 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 1180 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 1239 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1240 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctt 1299 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1300 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 1359 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 1360 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 1407
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 926 bits (467), Expect = 0.0 Identities = 556/588 (94%) Strand = Plus / Minus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 10377923 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 10377864 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10377863 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 10377804 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 10377803 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 10377744 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 10377743 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 10377684 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10377683 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 10377624 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 10377623 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 10377564 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 10377563 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 10377504 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 10377503 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctt 10377444 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10377443 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 10377384 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 10377383 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 10377336 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tacaaaagaataggaaaaag 180 |||||||||||||||||||| Sbjct: 12244279 tacaaaagaataggaaaaag 12244260
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 926 bits (467), Expect = 0.0 Identities = 556/588 (94%) Strand = Plus / Minus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 80036 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 79977 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79976 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 79917 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 79916 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 79857 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 79856 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 79797 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79796 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 79737 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 79736 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 79677 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 79676 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 79617 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 79616 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctt 79557 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79556 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 79497 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 79496 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 79449
>ref|XM_481016.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2472 Score = 918 bits (463), Expect = 0.0 Identities = 555/588 (94%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 820 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 879 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 880 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 939 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 940 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 999 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 1000 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 1059 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1060 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 1119 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1120 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 1179 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 1180 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 1239 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct: 1240 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgtagaatatatagctt 1299 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1300 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 1359 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 1360 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 1407
>ref|XM_481017.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2472 Score = 918 bits (463), Expect = 0.0 Identities = 555/588 (94%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 820 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 879 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 880 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 939 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 940 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 999 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 1000 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 1059 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1060 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 1119 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1120 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 1179 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 1180 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 1239 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct: 1240 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgtagaatatatagctt 1299 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1300 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 1359 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 1360 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 1407
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 918 bits (463), Expect = 0.0 Identities = 549/580 (94%) Strand = Plus / Minus Query: 10 gaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggtacaacccaa 69 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 80075 gaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggtacaacccaa 80016 Query: 70 aaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagat 129 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80015 aatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagat 79956 Query: 130 nnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagggctcgaat 189 || || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79955 aaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagggctcgaat 79896 Query: 190 agaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaatggactca 249 |||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct: 79895 agaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaatggactca 79836 Query: 250 ggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgatacgatccac 309 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 79835 ggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgatacaatccac 79776 Query: 310 gtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcgaagaatta 369 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 79775 gtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcgaagaatta 79716 Query: 370 gagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatatttctatcgaa 429 ||||||||||||||||| ||| |||| ||||||||||||||| |||||||| |||||| Sbjct: 79715 gagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattgggatcgaa 79656 Query: 430 aaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctttccaatta 489 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 79655 aaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctttccaatta 79596 Query: 490 aaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaactaaaaaagca 549 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 79595 aaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaactaaaaaaaca 79536 Query: 550 gatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||||| ||||||||||||||||||||| || ||||||| Sbjct: 79535 gatataaagggagtaaaagtaaaaattgcaggccgtctcg 79496
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 918 bits (463), Expect = 0.0 Identities = 555/588 (94%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 9256975 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 9257034 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9257035 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 9257094 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 9257095 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 9257154 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 9257155 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 9257214 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9257215 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 9257274 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 9257275 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 9257334 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 9257335 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 9257394 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct: 9257395 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgtagaatatatagctt 9257454 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9257455 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 9257514 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 9257515 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 9257562 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 tacaaaagaataggaaaaag 180 |||||||||||||||||||| Sbjct: 7605837 tacaaaagaataggaaaaag 7605856
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 918 bits (463), Expect = 0.0 Identities = 555/588 (94%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 68188 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 68247 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68248 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 68307 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 68308 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 68367 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 68368 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 68427 Query: 242 tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68428 tggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgata 68487 Query: 302 cgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatcg 361 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 68488 caatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcg 68547 Query: 362 aagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatattt 421 ||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 68548 aagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattg 68607 Query: 422 ctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagctt 481 ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct: 68608 ggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgtagaatatatagctt 68667 Query: 482 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68668 tccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaacta 68727 Query: 542 aaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 68728 aaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 68775
>ref|XM_479425.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2380 Score = 898 bits (453), Expect = 0.0 Identities = 546/578 (94%), Gaps = 1/578 (0%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 727 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 786 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 787 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 846 Query: 122 aggaagatnnnnnnn-taagggattgtatcaagaactatatacaaaagaataggaaaaag 180 |||||||| || || |||||||||||||||||||||||||||||||||||||| Sbjct: 847 aggaagataaaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaag 906 Query: 181 ggctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaa 240 ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||| Sbjct: 907 ggctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaa 966 Query: 241 atggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgat 300 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 967 atggactcgggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgat 1026 Query: 301 acgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatc 360 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1027 acaatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatc 1086 Query: 361 gaagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatatt 420 |||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 1087 gaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatatt 1146 Query: 421 tctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagct 480 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1147 gggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagct 1206 Query: 481 ttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaact 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1207 ttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaact 1266 Query: 541 aaaaaagcagatataaggggagtaaaagtaaaaattgc 578 |||||| ||||||||| ||||||||||||||||||||| Sbjct: 1267 aaaaaaacagatataaagggagtaaaagtaaaaattgc 1304
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 898 bits (453), Expect = 0.0 Identities = 546/578 (94%), Gaps = 1/578 (0%) Strand = Plus / Minus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 27925569 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 27925510 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27925509 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 27925450 Query: 122 aggaagatnnnnnnn-taagggattgtatcaagaactatatacaaaagaataggaaaaag 180 |||||||| || || |||||||||||||||||||||||||||||||||||||| Sbjct: 27925449 aggaagataaaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaag 27925390 Query: 181 ggctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaa 240 ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||| Sbjct: 27925389 ggctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaa 27925330 Query: 241 atggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgat 300 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27925329 atggactcgggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgat 27925270 Query: 301 acgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatc 360 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 27925269 acaatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatc 27925210 Query: 361 gaagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatatt 420 |||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 27925209 gaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatatt 27925150 Query: 421 tctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagct 480 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 27925149 gggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagct 27925090 Query: 481 ttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaact 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27925089 ttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaact 27925030 Query: 541 aaaaaagcagatataaggggagtaaaagtaaaaattgc 578 |||||| ||||||||| ||||||||||||||||||||| Sbjct: 27925029 aaaaaaacagatataaagggagtaaaagtaaaaattgc 27924992
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 898 bits (453), Expect = 0.0 Identities = 546/578 (94%), Gaps = 1/578 (0%) Strand = Plus / Minus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 88927 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 88868 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88867 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 88808 Query: 122 aggaagatnnnnnnn-taagggattgtatcaagaactatatacaaaagaataggaaaaag 180 |||||||| || || |||||||||||||||||||||||||||||||||||||| Sbjct: 88807 aggaagataaaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaag 88748 Query: 181 ggctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaa 240 ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||| Sbjct: 88747 ggctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaa 88688 Query: 241 atggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgat 300 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88687 atggactcgggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgat 88628 Query: 301 acgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatc 360 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 88627 acaatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatc 88568 Query: 361 gaagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatatt 420 |||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 88567 gaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatatt 88508 Query: 421 tctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagct 480 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 88507 gggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagct 88448 Query: 481 ttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaact 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88447 ttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaact 88388 Query: 541 aaaaaagcagatataaggggagtaaaagtaaaaattgc 578 |||||| ||||||||| ||||||||||||||||||||| Sbjct: 88387 aaaaaaacagatataaagggagtaaaagtaaaaattgc 88350
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_D04 Length = 143407 Score = 898 bits (453), Expect = 0.0 Identities = 546/578 (94%), Gaps = 1/578 (0%) Strand = Plus / Minus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 14903 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 14844 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14843 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 14784 Query: 122 aggaagatnnnnnnn-taagggattgtatcaagaactatatacaaaagaataggaaaaag 180 |||||||| || || |||||||||||||||||||||||||||||||||||||| Sbjct: 14783 aggaagataaaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaag 14724 Query: 181 ggctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaa 240 ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||| Sbjct: 14723 ggctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaa 14664 Query: 241 atggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgat 300 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14663 atggactcgggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgat 14604 Query: 301 acgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatc 360 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 14603 acaatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatc 14544 Query: 361 gaagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatatt 420 |||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 14543 gaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatatt 14484 Query: 421 tctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagct 480 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 14483 gggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagct 14424 Query: 481 ttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaact 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14423 ttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaact 14364 Query: 541 aaaaaagcagatataaggggagtaaaagtaaaaattgc 578 |||||| ||||||||| ||||||||||||||||||||| Sbjct: 14363 aaaaaaacagatataaagggagtaaaagtaaaaattgc 14326
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 852 bits (430), Expect = 0.0 Identities = 551/590 (93%), Gaps = 4/590 (0%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaatatgggacaaaaaataaatccactcggttttagacttggta 61 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 75301 aaaaaatagaatagaaaaatatgggacaaaaaataaatccacttggtttcagacttggta 75360 Query: 62 caacccaaaaacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75361 caacccaaaatcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctac 75420 Query: 122 aggaagatnnnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagg 181 |||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 75421 aggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagg 75480 Query: 182 gctcgaatagaaaaatagaatcagactcaagttccgaagtaattacacataatagaaaaa 241 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct: 75481 gctcgaatagaaaaatagaagcagactcaagtttcgaagtaattacacataataaaaaaa 75540 Query: 242 -tggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgat 300 |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 75541 atggactcaggctcaagttccgaagtaattacacata--gaaattcaaaaagaaatcgat 75598 Query: 301 acgatccacgtcataatccatattggattcccaaatttattaaagaaaaaaggagcaatc 360 || ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 75599 acaatccatgtcataatacatattggattccccaatttattaaagaaaaaaggagcaatc 75658 Query: 361 gaagaattagagaaagatctacaaaaggaaattaactctgtaaaccagagatttaatatt 420 |||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 75659 gaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatatt 75718 Query: 421 tctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaatatatagct 480 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 75719 gggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagct 75778 Query: 481 ttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaact 540 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 75779 ttccaattaaaaaatagagtttcattccaaaaggcaatgaaaaaagccattgaattaact 75838 Query: 541 -aaaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 |||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 75839 aaaaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 75888
>dbj|AK060382.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-E08, full insert sequence Length = 622 Score = 626 bits (316), Expect = e-176 Identities = 376/396 (94%) Strand = Plus / Plus Query: 194 aaatagaatcagactcaagttccgaagtaattacacataatagaaaaatggactcaggtt 253 |||||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||| | Sbjct: 1 aaatagaagcagacttaagtttcgaagtaattacacataataaaaaaatggactcaggct 60 Query: 254 caagttccgaagtaattacacatatagaaattcaaaaagaaatcgatacgatccacgtca 313 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 61 caagttccgaagtaattacacatatagaaattcaaaaagaaatcgatacaatccacgtca 120 Query: 314 taatccatattggattcccaaatttattaaagaaaaaaggagcaatcgaagaattagaga 373 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 121 taatccatattggattccccaatttattaaagaaaaaaggagcaatcgaagaattagaga 180 Query: 374 aagatctacaaaaggaaattaactctgtaaaccagagatttaatatttctatcgaaaaag 433 ||||||||||||| ||| |||| ||||||||||||||| |||||||| |||||||||| Sbjct: 181 aagatctacaaaaagaagttaattctgtaaaccagagacttaatattgggatcgaaaaag 240 Query: 434 ttaaagaaccttatagacagcctaacattcttgcagaatatatagctttccaattaaaaa 493 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tgaaagaaccttatagacaacctaacattcttgcagaatatatagctttccaattaaaaa 300 Query: 494 atagagtttcattccgaaaggcaatgaaaaaagccattgaattaactaaaaaagcagata 553 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 301 atagagtttcattccgaaaggcaatgaaaaaagccattgaattaactaaaaaaacagata 360 Query: 554 taaggggagtaaaagtaaaaattgcgggtcgtctcg 589 ||| ||||||||||||||||||||| || ||||||| Sbjct: 361 taaagggagtaaaagtaaaaattgcaggccgtctcg 396 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 187 aatagaaaaatagaatcagactcaagttccgaagtaattacacata 232 |||| |||||| || |||| |||||||||||||||||||||||||| Sbjct: 39 aataaaaaaatggactcaggctcaagttccgaagtaattacacata 84
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 577 bits (291), Expect = e-161 Identities = 342/359 (95%) Strand = Plus / Minus Query: 231 taatagaaaaatggactcaggttcaagttccgaagtaattacacatatagaaattcaaaa 290 ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 55873 taataaaaaaatggactcaggctcaagttccgaagtaattacacatatagaaattcaaaa 55814 Query: 291 agaaatcgatacgatccacgtcataatccatattggattcccaaatttattaaagaaaaa 350 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 55813 agaaatcgatacaatccacgtcataatccatattggattccccaatttattaaagaaaaa 55754 Query: 351 aggagcaatcgaagaattagagaaagatctacaaaaggaaattaactctgtaaaccagag 410 |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| Sbjct: 55753 aggagcaatcgaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagag 55694 Query: 411 atttaatatttctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcaga 470 | |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 55693 acttaatattgggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcaga 55634 Query: 471 atatatagctttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccat 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55633 atatatagctttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccat 55574 Query: 531 tgaattaactaaaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 |||||||||||||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 55573 tgaattaactaaaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 55515 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 187 aatagaaaaatagaatcagactcaagttccgaagtaattacacata 232 |||| |||||| || |||| |||||||||||||||||||||||||| Sbjct: 55872 aataaaaaaatggactcaggctcaagttccgaagtaattacacata 55827
>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07, complete sequence Length = 136858 Score = 577 bits (291), Expect = e-161 Identities = 342/359 (95%) Strand = Plus / Minus Query: 231 taatagaaaaatggactcaggttcaagttccgaagtaattacacatatagaaattcaaaa 290 ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 128701 taataaaaaaatggactcaggctcaagttccgaagtaattacacatatagaaattcaaaa 128642 Query: 291 agaaatcgatacgatccacgtcataatccatattggattcccaaatttattaaagaaaaa 350 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 128641 agaaatcgatacaatccacgtcataatccatattggattccccaatttattaaagaaaaa 128582 Query: 351 aggagcaatcgaagaattagagaaagatctacaaaaggaaattaactctgtaaaccagag 410 |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| Sbjct: 128581 aggagcaatcgaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagag 128522 Query: 411 atttaatatttctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcaga 470 | |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 128521 acttaatattgggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcaga 128462 Query: 471 atatatagctttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccat 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 128461 atatatagctttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccat 128402 Query: 531 tgaattaactaaaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 |||||||||||||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 128401 tgaattaactaaaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 128343 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 187 aatagaaaaatagaatcagactcaagttccgaagtaattacacata 232 |||| |||||| || |||| |||||||||||||||||||||||||| Sbjct: 128700 aataaaaaaatggactcaggctcaagttccgaagtaattacacata 128655
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 577 bits (291), Expect = e-161 Identities = 342/359 (95%) Strand = Plus / Minus Query: 231 taatagaaaaatggactcaggttcaagttccgaagtaattacacatatagaaattcaaaa 290 ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 12758414 taataaaaaaatggactcaggctcaagttccgaagtaattacacatatagaaattcaaaa 12758355 Query: 291 agaaatcgatacgatccacgtcataatccatattggattcccaaatttattaaagaaaaa 350 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 12758354 agaaatcgatacaatccacgtcataatccatattggattccccaatttattaaagaaaaa 12758295 Query: 351 aggagcaatcgaagaattagagaaagatctacaaaaggaaattaactctgtaaaccagag 410 |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| Sbjct: 12758294 aggagcaatcgaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagag 12758235 Query: 411 atttaatatttctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcaga 470 | |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 12758234 acttaatattgggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcaga 12758175 Query: 471 atatatagctttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccat 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12758174 atatatagctttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccat 12758115 Query: 531 tgaattaactaaaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtctcg 589 |||||||||||||||| ||||||||| ||||||||||||||||||||| || ||||||| Sbjct: 12758114 tgaattaactaaaaaaacagatataaagggagtaaaagtaaaaattgcaggccgtctcg 12758056 Score = 75.8 bits (38), Expect = 1e-10 Identities = 57/62 (91%), Gaps = 1/62 (1%) Strand = Plus / Plus Query: 528 cattgaattaactaaaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtct 587 ||||||||||||||||||| || |||||| ||||||||||||||||||||| || ||||| Sbjct: 19543473 cattgaattaactaaaaaa-catatataaagggagtaaaagtaaaaattgcaggccgtct 19543531 Query: 588 cg 589 || Sbjct: 19543532 cg 19543533 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 187 aatagaaaaatagaatcagactcaagttccgaagtaattacacata 232 |||| |||||| || |||| |||||||||||||||||||||||||| Sbjct: 12758413 aataaaaaaatggactcaggctcaagttccgaagtaattacacata 12758368 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 atttattaaagaaaaaagga 354 |||||||||||||||||||| Sbjct: 19753360 atttattaaagaaaaaagga 19753379
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 523 bits (264), Expect = e-145 Identities = 333/356 (93%) Strand = Plus / Minus Query: 232 aatagaaaaatggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaa 291 |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 2763 aatagaaaaatggaatcagactcaagttctgaagtaattacacatatagaaattcaaaaa 2704 Query: 292 gaaatcgatacgatccacgtcataatccatattggattcccaaatttattaaagaaaaaa 351 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2703 gaaatcgatacaatccacgtcataatccatattggattcccaaatttattaaagaaaaag 2644 Query: 352 ggagcaatcgaagaattagagaaagatctacaaaaggaaattaactctgtaaaccagaga 411 ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| Sbjct: 2643 ggagcaatcgaagaattagagaaagatctccaaaaggaagttaattctgtaaaccagaga 2584 Query: 412 tttaatatttctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaa 471 |||||||| |||||||||| |||||||||||||||||||| ||||| |||||||| ||| Sbjct: 2583 cttaatattgctatcgaaaaggttaaagaaccttatagacaacctaatattcttgcggaa 2524 Query: 472 tatatagctttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccatt 531 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 2523 tatatagctttccaattaaaaaatagagtttcattccgaaaagcaatgaaaaaagctatt 2464 Query: 532 gaattaactaaaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtct 587 ||||||||||||||||| ||||||| |||| ||||| | |||||||||||||||| Sbjct: 2463 gaattaactaaaaaagcggatataaagggaataaaaatccaaattgcgggtcgtct 2408 Score = 343 bits (173), Expect = 4e-91 Identities = 208/222 (93%) Strand = Plus / Minus Query: 11 aatagaaaaatatgggacaaaaaataaatccactcggttttagacttggtacaacccaaa 70 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2939 aatagaaaaatatgggacaaaaaataaatccactcggtttcagacttggtacaacccaaa 2880 Query: 71 aacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatn 130 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2879 atcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagata 2820 Query: 131 nnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagggctcgaata 190 || || ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 2819 aaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaaaggctcgaata 2760 Query: 191 gaaaaatagaatcagactcaagttccgaagtaattacacata 232 ||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 2759 gaaaaatggaatcagactcaagttctgaagtaattacacata 2718
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 523 bits (264), Expect = e-145 Identities = 333/356 (93%) Strand = Plus / Minus Query: 232 aatagaaaaatggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaa 291 |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 82320 aatagaaaaatggaatcagactcaagttctgaagtaattacacatatagaaattcaaaaa 82261 Query: 292 gaaatcgatacgatccacgtcataatccatattggattcccaaatttattaaagaaaaaa 351 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82260 gaaatcgatacaatccacgtcataatccatattggattcccaaatttattaaagaaaaag 82201 Query: 352 ggagcaatcgaagaattagagaaagatctacaaaaggaaattaactctgtaaaccagaga 411 ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| Sbjct: 82200 ggagcaatcgaagaattagagaaagatctccaaaaggaagttaattctgtaaaccagaga 82141 Query: 412 tttaatatttctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaa 471 |||||||| |||||||||| |||||||||||||||||||| ||||| |||||||| ||| Sbjct: 82140 cttaatattgctatcgaaaaggttaaagaaccttatagacaacctaatattcttgcggaa 82081 Query: 472 tatatagctttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccatt 531 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 82080 tatatagctttccaattaaaaaatagagtttcattccgaaaagcaatgaaaaaagctatt 82021 Query: 532 gaattaactaaaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtct 587 ||||||||||||||||| ||||||| |||| ||||| | |||||||||||||||| Sbjct: 82020 gaattaactaaaaaagcggatataaagggaataaaaatccaaattgcgggtcgtct 81965 Score = 343 bits (173), Expect = 4e-91 Identities = 208/222 (93%) Strand = Plus / Minus Query: 11 aatagaaaaatatgggacaaaaaataaatccactcggttttagacttggtacaacccaaa 70 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 82496 aatagaaaaatatgggacaaaaaataaatccactcggtttcagacttggtacaacccaaa 82437 Query: 71 aacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatn 130 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82436 atcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagata 82377 Query: 131 nnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagggctcgaata 190 || || ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 82376 aaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaaaggctcgaata 82317 Query: 191 gaaaaatagaatcagactcaagttccgaagtaattacacata 232 ||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 82316 gaaaaatggaatcagactcaagttctgaagtaattacacata 82275
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 507 bits (256), Expect = e-140 Identities = 331/356 (92%) Strand = Plus / Minus Query: 232 aatagaaaaatggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaa 291 |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 81622 aatagaaaaatggaatcagactcaagttctgaagtaattacacatatagaaattcaaaaa 81563 Query: 292 gaaatcgatacgatccacgtcataatccatattggattcccaaatttattaaagaaaaaa 351 ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 81562 gaaatcgatacaatccacgtcataatccatattggattccccaacttattaaagaaaaag 81503 Query: 352 ggagcaatcgaagaattagagaaagatctacaaaaggaaattaactctgtaaaccagaga 411 ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| Sbjct: 81502 ggagcaatcgaagaattagagaaagatctccaaaaggaagttaattctgtaaaccagaga 81443 Query: 412 tttaatatttctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaa 471 |||||||| |||||||||| |||||||||||||||||||| ||||| |||||||| ||| Sbjct: 81442 cttaatattgctatcgaaaaggttaaagaaccttatagacaacctaatattcttgcggaa 81383 Query: 472 tatatagctttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccatt 531 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 81382 tatatagctttccaattaaaaaatagagtttcattccgaaaagcaatgaaaaaagctatt 81323 Query: 532 gaattaactaaaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtct 587 ||||||||||||||||| ||||||| |||| ||||| | |||||||||||||||| Sbjct: 81322 gaattaactaaaaaagcggatataaagggaataaaaatccaaattgcgggtcgtct 81267 Score = 343 bits (173), Expect = 4e-91 Identities = 208/222 (93%) Strand = Plus / Minus Query: 11 aatagaaaaatatgggacaaaaaataaatccactcggttttagacttggtacaacccaaa 70 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 81798 aatagaaaaatatgggacaaaaaataaatccactcggtttcagacttggtacaacccaaa 81739 Query: 71 aacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatn 130 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81738 atcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagata 81679 Query: 131 nnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagggctcgaata 190 || || ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 81678 aaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaaaggctcgaata 81619 Query: 191 gaaaaatagaatcagactcaagttccgaagtaattacacata 232 ||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 81618 gaaaaatggaatcagactcaagttctgaagtaattacacata 81577
>emb|Y00340.1|CHZMRPS3 Maize chloroplast rps3 gene for ribosomal protein S3 Length = 731 Score = 507 bits (256), Expect = e-140 Identities = 331/356 (92%) Strand = Plus / Plus Query: 232 aatagaaaaatggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaa 291 |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 194 aatagaaaaatggaatcagactcaagttctgaagtaattacacatatagaaattcaaaaa 253 Query: 292 gaaatcgatacgatccacgtcataatccatattggattcccaaatttattaaagaaaaaa 351 ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 254 gaaatcgatacaatccacgtcataatccatattggattccccaacttattaaagaaaaag 313 Query: 352 ggagcaatcgaagaattagagaaagatctacaaaaggaaattaactctgtaaaccagaga 411 ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| Sbjct: 314 ggagcaatcgaagaattagagaaagatctccaaaaggaagttaattctgtaaaccagaga 373 Query: 412 tttaatatttctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaa 471 |||||||| |||||||||| |||||||||||||||||||| ||||| |||||||| ||| Sbjct: 374 cttaatattgctatcgaaaaggttaaagaaccttatagacaacctaatattcttgcggaa 433 Query: 472 tatatagctttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccatt 531 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 434 tatatagctttccaattaaaaaatagagtttcattccgaaaagcaatgaaaaaagctatt 493 Query: 532 gaattaactaaaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtct 587 ||||||||||||||||| ||||||| |||| ||||| | |||||||||||||||| Sbjct: 494 gaattaactaaaaaagcggatataaagggaataaaaatccaaattgcgggtcgtct 549 Score = 343 bits (173), Expect = 4e-91 Identities = 208/222 (93%) Strand = Plus / Plus Query: 11 aatagaaaaatatgggacaaaaaataaatccactcggttttagacttggtacaacccaaa 70 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 18 aatagaaaaatatgggacaaaaaataaatccactcggtttcagacttggtacaacccaaa 77 Query: 71 aacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatn 130 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 atcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagata 137 Query: 131 nnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagggctcgaata 190 || || ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 138 aaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaaaggctcgaata 197 Query: 191 gaaaaatagaatcagactcaagttccgaagtaattacacata 232 ||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 198 gaaaaatggaatcagactcaagttctgaagtaattacacata 239
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 507 bits (256), Expect = e-140 Identities = 331/356 (92%) Strand = Plus / Minus Query: 232 aatagaaaaatggactcaggttcaagttccgaagtaattacacatatagaaattcaaaaa 291 |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 81652 aatagaaaaatggaatcagactcaagttctgaagtaattacacatatagaaattcaaaaa 81593 Query: 292 gaaatcgatacgatccacgtcataatccatattggattcccaaatttattaaagaaaaaa 351 ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 81592 gaaatcgatacaatccacgtcataatccatattggattccccaacttattaaagaaaaag 81533 Query: 352 ggagcaatcgaagaattagagaaagatctacaaaaggaaattaactctgtaaaccagaga 411 ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| Sbjct: 81532 ggagcaatcgaagaattagagaaagatctccaaaaggaagttaattctgtaaaccagaga 81473 Query: 412 tttaatatttctatcgaaaaagttaaagaaccttatagacagcctaacattcttgcagaa 471 |||||||| |||||||||| |||||||||||||||||||| ||||| |||||||| ||| Sbjct: 81472 cttaatattgctatcgaaaaggttaaagaaccttatagacaacctaatattcttgcggaa 81413 Query: 472 tatatagctttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccatt 531 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 81412 tatatagctttccaattaaaaaatagagtttcattccgaaaagcaatgaaaaaagctatt 81353 Query: 532 gaattaactaaaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtct 587 ||||||||||||||||| ||||||| |||| ||||| | |||||||||||||||| Sbjct: 81352 gaattaactaaaaaagcggatataaagggaataaaaatccaaattgcgggtcgtct 81297 Score = 343 bits (173), Expect = 4e-91 Identities = 208/222 (93%) Strand = Plus / Minus Query: 11 aatagaaaaatatgggacaaaaaataaatccactcggttttagacttggtacaacccaaa 70 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 81828 aatagaaaaatatgggacaaaaaataaatccactcggtttcagacttggtacaacccaaa 81769 Query: 71 aacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatn 130 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81768 atcaccattccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagata 81709 Query: 131 nnnnnntaagggattgtatcaagaactatatacaaaagaataggaaaaagggctcgaata 190 || || ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 81708 aaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaaaggctcgaata 81649 Query: 191 gaaaaatagaatcagactcaagttccgaagtaattacacata 232 ||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 81648 gaaaaatggaatcagactcaagttctgaagtaattacacata 81607
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 244 bits (123), Expect = 3e-61 Identities = 181/199 (90%), Gaps = 1/199 (0%) Strand = Plus / Minus Query: 392 ttaactctgtaaaccagagatttaatatttctatcgaaaaagttaaagaaccttatagac 451 |||| ||||||||||||||| |||||||| ||||||||||| |||||| ||||||||| Sbjct: 17405191 ttaattctgtaaaccagagacttaatattgggatcgaaaaagtgaaagaatcttatagac 17405132 Query: 452 agcctaacattcttgcagaatatatagctttccaattaaaaaa-tagagtttcattccga 510 | |||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 17405131 aacctatcattcttgtagaatatatagctttccaattaaaaaaatagagtttcattccga 17405072 Query: 511 aaggcaatgaaaaaagccattgaattaactaaaaaagcagatataaggggagtaaaagta 570 |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 17405071 aaggcaatgaaaaaaggcattgaattaactaaaaaaatggatataaagggagtaaaagta 17405012 Query: 571 aaaattgcgggtcgtctcg 589 |||||||| || ||||||| Sbjct: 17405011 aaaattgcaggccgtctcg 17404993 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 473 atatagctttccaattaaaaaata 496 |||||| ||||||||||||||||| Sbjct: 2333544 atatagatttccaattaaaaaata 2333521
>dbj|AP003203.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1080D07 Length = 173856 Score = 244 bits (123), Expect = 3e-61 Identities = 181/199 (90%), Gaps = 1/199 (0%) Strand = Plus / Minus Query: 392 ttaactctgtaaaccagagatttaatatttctatcgaaaaagttaaagaaccttatagac 451 |||| ||||||||||||||| |||||||| ||||||||||| |||||| ||||||||| Sbjct: 171452 ttaattctgtaaaccagagacttaatattgggatcgaaaaagtgaaagaatcttatagac 171393 Query: 452 agcctaacattcttgcagaatatatagctttccaattaaaaaa-tagagtttcattccga 510 | |||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 171392 aacctatcattcttgtagaatatatagctttccaattaaaaaaatagagtttcattccga 171333 Query: 511 aaggcaatgaaaaaagccattgaattaactaaaaaagcagatataaggggagtaaaagta 570 |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 171332 aaggcaatgaaaaaaggcattgaattaactaaaaaaatggatataaagggagtaaaagta 171273 Query: 571 aaaattgcgggtcgtctcg 589 |||||||| || ||||||| Sbjct: 171272 aaaattgcaggccgtctcg 171254
>dbj|AP003144.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0507H06 Length = 136351 Score = 244 bits (123), Expect = 3e-61 Identities = 181/199 (90%), Gaps = 1/199 (0%) Strand = Plus / Minus Query: 392 ttaactctgtaaaccagagatttaatatttctatcgaaaaagttaaagaaccttatagac 451 |||| ||||||||||||||| |||||||| ||||||||||| |||||| ||||||||| Sbjct: 58583 ttaattctgtaaaccagagacttaatattgggatcgaaaaagtgaaagaatcttatagac 58524 Query: 452 agcctaacattcttgcagaatatatagctttccaattaaaaaa-tagagtttcattccga 510 | |||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 58523 aacctatcattcttgtagaatatatagctttccaattaaaaaaatagagtttcattccga 58464 Query: 511 aaggcaatgaaaaaagccattgaattaactaaaaaagcagatataaggggagtaaaagta 570 |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 58463 aaggcaatgaaaaaaggcattgaattaactaaaaaaatggatataaagggagtaaaagta 58404 Query: 571 aaaattgcgggtcgtctcg 589 |||||||| || ||||||| Sbjct: 58403 aaaattgcaggccgtctcg 58385
>gb|DQ069461.1| Typha latifolia ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 654 Score = 180 bits (91), Expect = 3e-42 Identities = 237/286 (82%), Gaps = 6/286 (2%) Strand = Plus / Plus Query: 261 cgaagtaattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatcca 320 ||||| |||| ||| ||||| |||||||||| |||||||| |||||| ||||||||||| Sbjct: 171 cgaaggaattgcacgtataggaattcaaaaaaaaatcgatttgatccaggtcataatcca 230 Query: 321 tattggattcccaaatttattaaa------gaaaaaaggagcaatcgaagaattagagaa 374 ||||||||||||||||||||||| | ||| | ||| |||||||||||| ||| Sbjct: 231 tattggattcccaaatttattaatcgaggggcaaacacgaggaatcgaagaattgcagat 290 Query: 375 agatctacaaaaggaaattaactctgtaaaccagagatttaatatttctatcgaaaaagt 434 | || ||||||| || || | |||||||||| ||| | || ||| ||||| || ||| Sbjct: 291 aaatgtacaaaaagagttttattctgtaaaccgaagactcaacattgctatcacaagagt 350 Query: 435 taaagaaccttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaa 494 | || |||||||| |||| ||||| |||||| |||||||||||||||| ||||||||||| Sbjct: 351 tgaaaaaccttatggacaacctaatattctttcagaatatatagctttacaattaaaaaa 410 Query: 495 tagagtttcattccgaaaggcaatgaaaaaagccattgaattaact 540 ||||||||| || ||||| |||||||||||||| |||||||||||| Sbjct: 411 tagagtttcgtttcgaaaagcaatgaaaaaagctattgaattaact 456 Score = 176 bits (89), Expect = 5e-41 Identities = 136/154 (88%) Strand = Plus / Plus Query: 22 atgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattcc 81 ||||||||||||||||||||||| ||||| ||||||||||||||||||| || |||||| Sbjct: 1 atgggacaaaaaataaatccacttggtttcagacttggtacaacccaaagtcatcattcc 60 Query: 82 ttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaagg 141 ||||||||||||||||||||||||||||| | ||||||||||||||| || || Sbjct: 61 ttttggttcgcacaaccaaaaaattattccgcgggtctacaggaagatgaaaaaatacgg 120 Query: 142 gattgtatcaagaactatatacaaaagaatagga 175 ||||||||||||||||| ||||||||||||||| Sbjct: 121 aattgtatcaagaactatgtacaaaagaatagga 154
>gb|DQ069462.1| Yucca schidigera ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 660 Score = 155 bits (78), Expect = 2e-34 Identities = 131/151 (86%) Strand = Plus / Plus Query: 22 atgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattcc 81 ||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||| Sbjct: 1 atgggacaaaaaataaatccacttggtttcagacttggtacaacccaaaatcatcattcc 60 Query: 82 ttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaagg 141 ||||||||||||||||||||||||| ||| | ||||||||| || ||| || || Sbjct: 61 ttttggttcgcacaaccaaaaaatttttccgtaggtctacaagaggatgagaaaatacgg 120 Query: 142 gattgtatcaagaactatatacaaaagaata 172 ||||||||||||||||| ||||||| |||| Sbjct: 121 aattgtatcaagaactatgtacaaaaaaata 151 Score = 123 bits (62), Expect = 7e-25 Identities = 101/114 (88%) Strand = Plus / Plus Query: 440 aaccttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaatagag 499 |||||||| |||| ||||| ||||||||||||||||| |||| ||||||| |||||||| Sbjct: 362 aaccttatggacaccctaatattcttgcagaatatatggcttcacaattaagaaatagag 421 Query: 500 tttcattccgaaaggcaatgaaaaaagccattgaattaactaaaaaagcagata 553 |||| ||||||||||||||||||| ||| |||||||||||| || || |||||| Sbjct: 422 tttcgttccgaaaggcaatgaaaagagctattgaattaactgaacaaacagata 475 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 277 atagaaattcaaaaagaaatcgatacgatccacgtcataatccatattggattcccaaat 336 ||||||||||||||| ||||||| |||||| ||||||||| ||||||| ||||||||| Sbjct: 193 atagaaattcaaaaaagaatcgatttgatccaagtcataatctatattgggttcccaaat 252 Query: 337 ttattaa 343 ||||||| Sbjct: 253 ttattaa 259
>gb|DQ069459.1| Nuphar advena ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 654 Score = 153 bits (77), Expect = 8e-34 Identities = 127/146 (86%) Strand = Plus / Plus Query: 22 atgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattcc 81 |||||||| |||||||||||||| ||||| ||||||||||||||||||| || | |||| Sbjct: 1 atgggacagaaaataaatccacttggtttcagacttggtacaacccaaagtcatcgttcc 60 Query: 82 ttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaagg 141 |||||||||||||||||||||||||||||| ||||||| ||||||||| || || Sbjct: 61 ttttggttcgcacaaccaaaaaattattctaaaggtctccaggaagatgaaaaaatacgg 120 Query: 142 gattgtatcaagaactatatacaaaa 167 |||||||||||||| ||| ||||||| Sbjct: 121 gattgtatcaagaattatgtacaaaa 146 Score = 109 bits (55), Expect = 1e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||||||| ||| | |||||||| ||||||||||| || |||||| Sbjct: 370 cctaatattcttgcagaatatatcgctctgcaattaaagaatagagtttcctttcgaaag 429 Query: 514 gcaatgaaaaaagccattgaattaactaaaaaagcagat 552 |||||||||||||| ||||||||| || || |||||||| Sbjct: 430 gcaatgaaaaaagctattgaattagctgaacaagcagat 468 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 303 gatccacgtcataatccatattggattc 330 |||||| |||||||| |||||||||||| Sbjct: 213 gatccaagtcataattcatattggattc 240
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 149 bits (75), Expect = 1e-32 Identities = 128/148 (86%) Strand = Plus / Minus Query: 20 atatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccatt 79 |||||||||| |||||||||||||| ||||| ||||||||||||||||||| || | || Sbjct: 89134 atatgggacagaaaataaatccacttggtttcagacttggtacaacccaaagtcatcgtt 89075 Query: 80 ccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaa 139 ||||||||||||||||||||||||||||||| ||||||| ||||||||| || Sbjct: 89074 ccttttggttcgcacaaccaaaaaattattccaaaggtctccaggaagatgaaaaaatac 89015 Query: 140 gggattgtatcaagaactatatacaaaa 167 |||||||||||||||| ||| ||||||| Sbjct: 89014 gggattgtatcaagaattatgtacaaaa 88987 Score = 103 bits (52), Expect = 6e-19 Identities = 76/84 (90%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||||||| ||| | |||||||| ||||||||||| || |||||| Sbjct: 88763 cctaatattcttgcagaatatatcgctctgcaattaaagaatagagtttcctttcgaaag 88704 Query: 514 gcaatgaaaaaagccattgaatta 537 |||||||||||||| ||||||||| Sbjct: 88703 gcaatgaaaaaagctattgaatta 88680 Score = 50.1 bits (25), Expect = 0.008 Identities = 58/69 (84%) Strand = Plus / Minus Query: 262 gaagtaattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatccat 321 |||| |||| ||| |||||| ||| ||||| ||||||| |||||| |||||||| ||| Sbjct: 88961 gaaggaattgcacgtatagatattaaaaaaagaatcgatttgatccaagtcataattcat 88902 Query: 322 attggattc 330 ||||||||| Sbjct: 88901 attggattc 88893
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 145 bits (73), Expect = 2e-31 Identities = 135/158 (85%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| Sbjct: 85339 tatgggacaaaaaataaatccactcggtttcagacttggtacaacccaaggtcatcattc 85280 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaag 140 | ||||||| |||||||||||||||||||| |||||| |||| |||||| |||| Sbjct: 85279 cctttggtttgcacaaccaaaaaattattccgaaggtttacaagaagatcaaaaaataag 85220 Query: 141 ggattgtatcaagaactatatacaaaagaataggaaaa 178 |||| ||||||||| ||| ||||||| |||| ||||| Sbjct: 85219 agattttatcaagaattatgtacaaaaaaatatgaaaa 85182 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| |||||||| |||| |||||| ||||||||| |||||||||||||| ||||| Sbjct: 84969 cctaatattcttgcggaatttatagccggccaattaaagaatagagtttcatttcgaaaa 84910 Query: 514 gcaatgaaaaaagccattgaattaactaaaaaagcagata 553 ||||||||||| || ||||||||||| || ||||||||| Sbjct: 84909 gcaatgaaaaaggctattgaattaaccgaacaagcagata 84870 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 267 aattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatccatattgg 326 |||| ||| |||||| ||||||||| ||||||| |||||| ||||||||| |||| || Sbjct: 85162 aattgcacgtatagagattcaaaaacgaatcgatctgatccaggtcataatctatatggg 85103 Query: 327 attcccaaatttattaa 343 ||||||||| ||||||| Sbjct: 85102 attcccaaagttattaa 85086
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 141 bits (71), Expect = 3e-30 Identities = 130/152 (85%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||||||||||| ||||| ||||| |||||||||||| || ||||| Sbjct: 85899 tatgggacaaaaaataaatccacttggtttcagactgggtacaacccaaggtcatcattc 85840 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaag 140 | ||||||| |||||||||||||||||||||||||| |||| |||||| |||| Sbjct: 85839 cctttggttttcacaaccaaaaaattattctgaaggtttacaagaagatcaaaaaataag 85780 Query: 141 ggattgtatcaagaactatatacaaaagaata 172 |||||||||||||| ||| |||||||||||| Sbjct: 85779 agattgtatcaagaattatgtacaaaagaata 85748 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Minus Query: 440 aaccttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaatagag 499 |||||||| || | ||||| ||||||||||||| ||||||| |||||||| ||||||| Sbjct: 85543 aaccttatggaaaccctaatattcttgcagaatttatagctggacaattaaagaatagag 85484 Query: 500 tttcattccgaaaggcaatgaaaaaagccattgaattaactaaaaaagcagata 553 |||| || ||||| ||||||||||| || ||||||||||| || ||||||||| Sbjct: 85483 tttcctttcgaaaagcaatgaaaaaggctattgaattaacagaacaagcagata 85430 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 267 aattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatccatattgg 326 |||| ||| |||||| ||||||||| ||||||| |||||| ||||||||| ||| || Sbjct: 85722 aattgcacgtatagagattcaaaaaagaatcgatctgatccaggtcataatctttatggg 85663 Query: 327 attcccaaatttattaa 343 ||||||||| ||||||| Sbjct: 85662 attcccaaaattattaa 85646
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 141 bits (71), Expect = 3e-30 Identities = 130/152 (85%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||||||||||| ||||| ||||| |||||||||||| || ||||| Sbjct: 86146 tatgggacaaaaaataaatccacttggtttcagactgggtacaacccaaggtcatcattc 86087 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaag 140 | ||||||| |||||||||||||||||||||||||| |||| |||||| |||| Sbjct: 86086 cctttggttttcacaaccaaaaaattattctgaaggtttacaagaagatcaaaaaataag 86027 Query: 141 ggattgtatcaagaactatatacaaaagaata 172 |||||||||||||| ||| |||||||||||| Sbjct: 86026 agattgtatcaagaattatgtacaaaagaata 85995 Score = 95.6 bits (48), Expect = 2e-16 Identities = 87/100 (87%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| ||||||| |||||||| |||||||||||||| ||||| Sbjct: 85776 cctaatattcttgcagaatttatagctggacaattaaagaatagagtttcatttcgaaaa 85717 Query: 514 gcaatgaaaaaagccattgaattaactaaaaaagcagata 553 ||||||||||| || ||||||||||| || ||||||||| Sbjct: 85716 gcaatgaaaaaggctattgaattaacagaacaagcagata 85677 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 267 aattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatccatattgg 326 |||| ||| |||||| ||||||||| ||||||| |||||| ||||||||| ||| || Sbjct: 85969 aattgcacgtatagagattcaaaaaagaatcgatctgatccaggtcataatctttatggg 85910 Query: 327 attcccaaatttattaa 343 ||||||||| ||||||| Sbjct: 85909 attcccaaaattattaa 85893
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 141 bits (71), Expect = 3e-30 Identities = 130/152 (85%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||||||||||| ||||| ||||| |||||||||||| || ||||| Sbjct: 85897 tatgggacaaaaaataaatccacttggtttcagactgggtacaacccaaggtcatcattc 85838 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaag 140 | ||||||| |||||||||||||||||||||||||| |||| |||||| |||| Sbjct: 85837 cctttggttttcacaaccaaaaaattattctgaaggtttacaagaagatcaaaaaataag 85778 Query: 141 ggattgtatcaagaactatatacaaaagaata 172 |||||||||||||| ||| |||||||||||| Sbjct: 85777 agattgtatcaagaattatgtacaaaagaata 85746 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Minus Query: 440 aaccttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaatagag 499 |||||||| || | ||||| ||||||||||||| ||||||| |||||||| ||||||| Sbjct: 85541 aaccttatggaaaccctaatattcttgcagaatttatagctggacaattaaagaatagag 85482 Query: 500 tttcattccgaaaggcaatgaaaaaagccattgaattaactaaaaaagcagata 553 |||| || ||||| ||||||||||| || ||||||||||| || ||||||||| Sbjct: 85481 tttcctttcgaaaagcaatgaaaaaggctattgaattaacagaacaagcagata 85428 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 267 aattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatccatattgg 326 |||| ||| |||||| ||||||||| ||||||| |||||| ||||||||| ||| || Sbjct: 85720 aattgcacgtatagagattcaaaaaagaatcgatctgatccaggtcataatctttatggg 85661 Query: 327 attcccaaatttattaa 343 ||||||||| ||||||| Sbjct: 85660 attcccaaaattattaa 85644
>gb|M81884.1|EPFCPCG Epifagus virginiana chloroplast, complete genome Length = 70028 Score = 129 bits (65), Expect = 1e-26 Identities = 83/89 (93%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||||||||||| |||||||| |||||||||||||||| || ||||| Sbjct: 19482 tatgggacaaaaaataaatccacttggttttaggcttggtacaacccaaagtcatcattc 19423 Query: 81 cttttggttcgcacaaccaaaaaattatt 109 ||||||||| ||||||||||||||||||| Sbjct: 19422 cttttggtttgcacaaccaaaaaattatt 19394 Score = 79.8 bits (40), Expect = 9e-12 Identities = 85/100 (85%) Strand = Plus / Minus Query: 440 aaccttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaatagag 499 ||||||||||| | ||||| ||||||||||||| |||||| |||||||| ||||||| Sbjct: 19120 aaccttatagaaaccctaatattcttgcagaatttatagccgatcaattaaagaatagag 19061 Query: 500 tttcattccgaaaggcaatgaaaaaagccattgaattaac 539 |||| || |||| ||||||||||||| ||||||||||| Sbjct: 19060 tttcttttagaaaaacaatgaaaaaagctattgaattaac 19021
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 129 bits (65), Expect = 1e-26 Identities = 92/101 (91%) Strand = Plus / Minus Query: 440 aaccttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaatagag 499 ||||||| |||| ||||| ||||| ||||||||||||||||| |||||||||||||||| Sbjct: 85220 aaccttacggacaacctaatattctcgcagaatatatagctttacaattaaaaaatagag 85161 Query: 500 tttcattccgaaaggcaatgaaaaaagccattgaattaact 540 | ||||| |||||||||||||||||||| |||||||||||| Sbjct: 85160 tctcatttcgaaaggcaatgaaaaaagctattgaattaact 85120 Score = 109 bits (55), Expect = 1e-20 Identities = 97/111 (87%) Strand = Plus / Minus Query: 19 aatatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccat 78 |||||||||||||||||||||||||| ||||| |||||||| ||||| |||| || ||| Sbjct: 85578 aatatgggacaaaaaataaatccacttggtttcagacttggaacaactcaaagtcatcat 85519 Query: 79 tccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagat 129 || |||||||||||| |||||||||||| ||| ||||||||| |||||| Sbjct: 85518 tctttttggttcgcaaaaccaaaaaatttttccataggtctacaagaagat 85468
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 127 bits (64), Expect = 4e-26 Identities = 97/108 (89%) Strand = Plus / Minus Query: 22 atgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattcc 81 ||||||||||||||||||||| | ||||| |||||||||||||||||| || |||||| Sbjct: 83362 atgggacaaaaaataaatccaattggtttcagacttggtacaacccaaggtcatcattcc 83303 Query: 82 ttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagat 129 ||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct: 83302 ctttggttcgcacaaccaaaaaattattctgagggtctgcaagaagat 83255 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| |||||| ||||||||||||||||||||| || || || Sbjct: 82993 cctaatattcttgcagaatttatagcgggccaattaaaaaatagagtttcttttcgcaaa 82934 Query: 514 gcaatgaaaaaagccattgaattaactaaaaaagcagata 553 ||||||||||| || || ||||||||| || ||||||||| Sbjct: 82933 gcaatgaaaaaggctatagaattaactgaacaagcagata 82894
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 127 bits (64), Expect = 4e-26 Identities = 97/108 (89%) Strand = Plus / Minus Query: 22 atgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattcc 81 ||||||||||||||||||||| | ||||| |||||||||||||||||| || |||||| Sbjct: 82831 atgggacaaaaaataaatccaattggtttcagacttggtacaacccaaggtcatcattcc 82772 Query: 82 ttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagat 129 ||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct: 82771 ctttggttcgcacaaccaaaaaattattctgagggtctgcaagaagat 82724 Score = 79.8 bits (40), Expect = 9e-12 Identities = 85/100 (85%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| |||||| |||||||||||||||||||| || || || Sbjct: 82462 cctaatattcttgcagaatttatagccggacaattaaaaaatagagtttcttttcgcaaa 82403 Query: 514 gcaatgaaaaaagccattgaattaactaaaaaagcagata 553 ||||||||||| || || ||||||||| || ||||||||| Sbjct: 82402 gcaatgaaaaaggctatagaattaactgaacaagcagata 82363
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 127 bits (64), Expect = 4e-26 Identities = 132/157 (84%) Strand = Plus / Minus Query: 11 aatagaaaaatatgggacaaaaaataaatccactcggttttagacttggtacaacccaaa 70 |||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| Sbjct: 83122 aatagaaagatatgggacaaaaaataaatccacttggtttcagacttggtgcaacccaaa 83063 Query: 71 aacaccattccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatn 130 || | |||| ||||||||||||||||||||| ||||||| ||| ||||||||||| Sbjct: 83062 gtcatctttccctttggttcgcacaaccaaaaagttattctatgggtttacaggaagatg 83003 Query: 131 nnnnnntaagggattgtatcaagaactatatacaaaa 167 || |||| ||||||||||| ||| ||||||| Sbjct: 83002 aaaaaatacgggagtgtatcaagaattatgtacaaaa 82966 Score = 107 bits (54), Expect = 4e-20 Identities = 84/94 (89%) Strand = Plus / Minus Query: 460 attcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaaggcaatg 519 |||||||| |||||||||||||| ||| |||||||||||||||| || ||||| |||||| Sbjct: 82736 attcttgctgaatatatagctttacaactaaaaaatagagtttcgtttcgaaaagcaatg 82677 Query: 520 aaaaaagccattgaattaactaaaaaagcagata 553 |||||||| |||||||| ||| || ||||||||| Sbjct: 82676 aaaaaagctattgaattgactgaacaagcagata 82643 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 276 tatagaaattcaaaaagaaatcgatacgatccacgtcataatccatattggattcccaaa 335 |||||||||| ||||| ||||||| |||||| ||||||||| |||| ||||||||||| Sbjct: 82926 tatagaaattaaaaaaagaatcgatctgatccaggtcataatctatatcggattcccaaa 82867 Query: 336 tttatt 341 |||||| Sbjct: 82866 tttatt 82861
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 127 bits (64), Expect = 4e-26 Identities = 97/108 (89%) Strand = Plus / Minus Query: 22 atgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattcc 81 ||||||||||||||||||||| | ||||| |||||||||||||||||| || |||||| Sbjct: 83360 atgggacaaaaaataaatccaattggtttcagacttggtacaacccaaggtcatcattcc 83301 Query: 82 ttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagat 129 ||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct: 83300 ctttggttcgcacaaccaaaaaattattctgagggtctgcaagaagat 83253 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| |||||| ||||||||||||||||||||| || || || Sbjct: 82991 cctaatattcttgcagaatttatagcgggccaattaaaaaatagagtttcttttcgcaaa 82932 Query: 514 gcaatgaaaaaagccattgaattaactaaaaaagcagata 553 ||||||||||| || || ||||||||| || ||||||||| Sbjct: 82931 gcaatgaaaaaggctatagaattaactgaacaagcagata 82892
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 125 bits (63), Expect = 2e-25 Identities = 128/152 (84%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||| Sbjct: 88337 tatgggacaaaaaataaatccactgggtttcagacttggtacaacccaaggtcatcattc 88278 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaag 140 ||||||| |||||||||||||||||||| | |||||||| |||||| || | Sbjct: 88277 gctttggtttgcacaaccaaaaaattattccaagggtctacaagaagatcaaaaaatacg 88218 Query: 141 ggattgtatcaagaactatatacaaaagaata 172 ||||||||||||||| ||| ||||||| |||| Sbjct: 88217 ggattgtatcaagaattatgtacaaaaaaata 88186 Score = 75.8 bits (38), Expect = 1e-10 Identities = 95/114 (83%) Strand = Plus / Minus Query: 440 aaccttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaatagag 499 ||||||| |||| ||||| ||||||||||||| |||||| ||||||| ||||||| Sbjct: 87981 aaccttacggacatcctaatattcttgcagaatttatagccggacaattaaggaatagag 87922 Query: 500 tttcattccgaaaggcaatgaaaaaagccattgaattaactaaaaaagcagata 553 |||| || || |||||||| |||||||| |||||||||||| || | ||||||| Sbjct: 87921 tttcgtttcgcaaggcaataaaaaaagctattgaattaactgaacaggcagata 87868 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 267 aattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatccatattgg 326 |||| ||| |||||| ||||||||| ||||||| ||| || ||||||||| |||| || Sbjct: 88160 aattgcacgtatagagattcaaaaaagaatcgatctgattcaggtcataatctatatggg 88101 Query: 327 attcccaaatttatta 342 ||||||||| |||||| Sbjct: 88100 attcccaaagttatta 88085
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 125 bits (63), Expect = 2e-25 Identities = 128/152 (84%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||||||||||| ||||| ||||| |||||||||||| || ||||| Sbjct: 85071 tatgggacaaaaaataaatccacttggtttcagactgggtacaacccaaggtcatcattc 85012 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaag 140 | ||||||| ||||||| |||||||||||||| ||| |||| |||||| |||| Sbjct: 85011 cctttggttttcacaacccaaaaattattctgagggtttacaagaagataaaaaaataag 84952 Query: 141 ggattgtatcaagaactatatacaaaagaata 172 |||||||||||||| ||| |||||||||||| Sbjct: 84951 agattgtatcaagaattatgtacaaaagaata 84920 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| ||||||| |||||||| |||||||||||||| ||||| Sbjct: 84701 cctaatattcttgcagaatttatagctggacaattaaagaatagagtttcatttcgaaaa 84642 Query: 514 gcaatgaaaaaagccattgaattaac 539 ||||||||||| || ||||||||||| Sbjct: 84641 gcaatgaaaaaggctattgaattaac 84616 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 267 aattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatccatattgg 326 |||| ||| |||||| ||||||||| ||||||| |||||| ||||||||| ||| || Sbjct: 84894 aattgcacgtatagagattcaaaaaagaatcgatctgatccaggtcataatctttatggg 84835 Query: 327 attcccaaatttattaa 343 ||||||||| ||||||| Sbjct: 84834 attcccaaaattattaa 84818
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 125 bits (63), Expect = 2e-25 Identities = 128/152 (84%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||||||||||| ||||| ||||| |||||||| ||| || ||||| Sbjct: 85668 tatgggacaaaaaataaatccacttggtttcagactgggtacaactcaaggtcatcattc 85609 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaag 140 | ||||||| ||||||||||||||||||| |||||| |||| |||||| |||| Sbjct: 85608 cctttggttttcacaaccaaaaaattattcggaaggtttacaagaagatcaaaaaataag 85549 Query: 141 ggattgtatcaagaactatatacaaaagaata 172 |||||||||||||| ||| |||||||||||| Sbjct: 85548 agattgtatcaagaattatgtacaaaagaata 85517 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Minus Query: 440 aaccttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaatagag 499 |||||||| || | ||||| ||||||||||||| ||||||| |||||||| ||||||| Sbjct: 85312 aaccttatggaaaccctaatattcttgcagaatttatagctggacaattaaagaatagag 85253 Query: 500 tttcattccgaaaggcaatgaaaaaagccattgaattaactaaaaaagcagata 553 |||| || ||||| ||||||||||| || ||||||||||| || ||||||||| Sbjct: 85252 tttcctttcgaaaagcaatgaaaaaggctattgaattaacagaacaagcagata 85199 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 267 aattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatccatattgg 326 |||| ||| |||||||||| ||||| ||||||| |||||| ||||||||| ||| || Sbjct: 85491 aattgcacgtatagaaattaaaaaaagaatcgatctgatccaggtcataatctttatggg 85432 Query: 327 attcccaaatttattaa 343 ||||||||| ||||||| Sbjct: 85431 attcccaaaattattaa 85415
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 121 bits (61), Expect = 3e-24 Identities = 88/97 (90%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||| Sbjct: 83483 tatgggacaaaaaataaatccacttggtttcagacttggtacaacccaaagtcatcattc 83424 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggt 117 ||||||| |||||||||||||| |||||||||||| Sbjct: 83423 tctttggtttgcacaaccaaaaaagtattctgaaggt 83387 Score = 77.8 bits (39), Expect = 4e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| ||| ||| |||||||||||| | ||||| || ||||| Sbjct: 83113 cctaatattcttgcagaatttatcgctggacaattaaaaaatcgcgtttcttttcgaaaa 83054 Query: 514 gcaatgaaaaaagccattgaattaact 540 |||||||||||||| |||||||||||| Sbjct: 83053 gcaatgaaaaaagctattgaattaact 83027
>gb|DQ069460.1| Ranunculus macranthus ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 651 Score = 119 bits (60), Expect = 1e-23 Identities = 131/157 (83%) Strand = Plus / Plus Query: 22 atgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattcc 81 |||||||||||||||||||||||||| || | |||||||||||||||| || ||||| Sbjct: 1 atgggacaaaaaataaatccactcgggttccggcttggtacaacccaaagccatcattct 60 Query: 82 ttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaagg 141 ||||||| |||||||||||||||||||| | ||||| || |||||| ||| | Sbjct: 61 gtttggtttgcacaaccaaaaaattattccgggggtctccaagaagataaaaaaataaag 120 Query: 142 gattgtatcaagaactatatacaaaagaataggaaaa 178 |||||||||||||| ||| ||||||| |||||||||| Sbjct: 121 gattgtatcaagaattatgtacaaaaaaataggaaaa 157 Score = 107 bits (54), Expect = 4e-20 Identities = 99/114 (86%) Strand = Plus / Plus Query: 440 aaccttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaatagag 499 |||||||| | || ||||| ||||||||||||| ||||||| |||||||| ||| ||| Sbjct: 353 aaccttatgggcaacctaatattcttgcagaatttatagctggacaattaaagaatcgag 412 Query: 500 tttcattccgaaaggcaatgaaaaaagccattgaattaactaaaaaagcagata 553 ||||||| |||||||||||||||||||| |||||||||||| || | ||||||| Sbjct: 413 tttcatttcgaaaggcaatgaaaaaagctattgaattaactgaacaggcagata 466
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 119 bits (60), Expect = 1e-23 Identities = 87/96 (90%) Strand = Plus / Minus Query: 22 atgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattcc 81 ||||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||| Sbjct: 82585 atgggacaaaaaataaatccacttggtttcagacttggtacaacccaaagtcatcattct 82526 Query: 82 ttttggttcgcacaaccaaaaaattattctgaaggt 117 ||||||| |||||||||||||| |||||||||||| Sbjct: 82525 atttggtttgcacaaccaaaaaagtattctgaaggt 82490 Score = 93.7 bits (47), Expect = 6e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| ||||||| ||||||||||||| | ||||| || ||||| Sbjct: 82216 cctaatattcttgcagaatttatagctggccaattaaaaaatcgcgtttcttttcgaaaa 82157 Query: 514 gcaatgaaaaaagccattgaattaact 540 |||||||||||||| |||||||||||| Sbjct: 82156 gcaatgaaaaaagctattgaattaact 82130
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 117 bits (59), Expect = 4e-23 Identities = 127/152 (83%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||| Sbjct: 87952 tatgggacaaaaaataaatccacttggtttcagacttggtacaacccaaagtcatcattc 87893 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaag 140 ||||||| |||||||| ||||| ||||| || |||||||| |||||| |||| Sbjct: 87892 tctttggtttgcacaaccgaaaaagtattccgagggtctacaagaagataaaaaaataag 87833 Query: 141 ggattgtatcaagaactatatacaaaagaata 172 || ||||||||||| ||| ||||||| |||| Sbjct: 87832 agactgtatcaagaattatgtacaaaaaaata 87801 Score = 77.8 bits (39), Expect = 4e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| |||||||| |||| |||||| |||||||| ||| |||||||||| |||||| Sbjct: 87582 cctaatattcttgccgaatttatagccggacaattaaagaatcgagtttcatttcgaaag 87523 Query: 514 gcaatgaaaaaagccattgaattaact 540 ||||||||||| || |||||||||||| Sbjct: 87522 gcaatgaaaaaggctattgaattaact 87496
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 117 bits (59), Expect = 4e-23 Identities = 127/152 (83%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||||||||||| ||||| ||||| |||||||||||| || ||||| Sbjct: 85024 tatgggacaaaaaataaatccacttggtttcagactgggtacaacccaaggtcatcattc 84965 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaag 140 | ||||||| ||||||| |||||||||||||| ||| |||| |||||| |||| Sbjct: 84964 cctttggttttcacaacccaaaaattattctgagggtttacaagaagataaaaaaataag 84905 Query: 141 ggattgtatcaagaactatatacaaaagaata 172 |||||||||||||| ||| | |||||||||| Sbjct: 84904 agattgtatcaagaattatgtccaaaagaata 84873 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| ||||||| |||||||| |||||||||||||| ||||| Sbjct: 84654 cctaatattcttgcagaatttatagctggacaattaaagaatagagtttcatttcgaaaa 84595 Query: 514 gcaatgaaaaaagccattgaattaac 539 ||||||||||| || ||||||||||| Sbjct: 84594 gcaatgaaaaaggctattgaattaac 84569 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 267 aattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatccatattgg 326 |||| ||| |||||| ||||||||| ||||||| |||||| ||||||||| ||| || Sbjct: 84847 aattgcacgtatagagattcaaaaaagaatcgatctgatccaggtcataatctttatggg 84788 Query: 327 attcccaaatttattaa 343 ||||||||| ||||||| Sbjct: 84787 attcccaaaattattaa 84771
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 117 bits (59), Expect = 4e-23 Identities = 127/152 (83%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||||||||||| ||||| ||||| ||||||||||||| || ||||| Sbjct: 85188 tatgggacaaaaaataaatccacttggtttcagactgggtacaacccaaagtcatcattc 85129 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaag 140 | ||||||| ||||||| |||||||||||||| ||| |||| |||||| | || Sbjct: 85128 cctttggttttcacaacccaaaaattattctgagggtttacaagaagataaaaaaatcag 85069 Query: 141 ggattgtatcaagaactatatacaaaagaata 172 |||||||||||||| ||| ||||||| |||| Sbjct: 85068 agattgtatcaagaattatgtacaaaaaaata 85037 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| ||||||| |||||||| |||||||||||||| ||||| Sbjct: 84818 cctaatattcttgcagaatttatagctggacaattaaagaatagagtttcatttcgaaaa 84759 Query: 514 gcaatgaaaaaagccattgaattaac 539 ||||||||||| || ||||||||||| Sbjct: 84758 gcaatgaaaaaggctattgaattaac 84733 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 267 aattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatccatattgg 326 |||| ||| |||||| ||||||||| ||||||| |||||| ||||||||| ||| || Sbjct: 85011 aattgcacgtatagagattcaaaaaagaatcgatctgatccaggtcataatctttatggg 84952 Query: 327 attcccaaatttattaa 343 ||||||||| ||||||| Sbjct: 84951 attcccaaaattattaa 84935
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 117 bits (59), Expect = 4e-23 Identities = 127/152 (83%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||||||||||| ||||| ||||| ||||||||||||| || ||||| Sbjct: 85185 tatgggacaaaaaataaatccacttggtttcagactgggtacaacccaaagtcatcattc 85126 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaag 140 | ||||||| ||||||| |||||||||||||| ||| |||| |||||| | || Sbjct: 85125 cctttggttttcacaacccaaaaattattctgagggtttacaagaagataaaaaaatcag 85066 Query: 141 ggattgtatcaagaactatatacaaaagaata 172 |||||||||||||| ||| ||||||| |||| Sbjct: 85065 agattgtatcaagaattatgtacaaaaaaata 85034 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| ||||||| |||||||| |||||||||||||| ||||| Sbjct: 84815 cctaatattcttgcagaatttatagctggacaattaaagaatagagtttcatttcgaaaa 84756 Query: 514 gcaatgaaaaaagccattgaattaac 539 ||||||||||| || ||||||||||| Sbjct: 84755 gcaatgaaaaaggctattgaattaac 84730 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 267 aattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatccatattgg 326 |||| ||| |||||| ||||||||| ||||||| |||||| ||||||||| ||| || Sbjct: 85008 aattgcacgtatagagattcaaaaaagaatcgatctgatccaggtcataatctttatggg 84949 Query: 327 attcccaaatttattaa 343 ||||||||| ||||||| Sbjct: 84948 attcccaaaattattaa 84932
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 117 bits (59), Expect = 4e-23 Identities = 127/152 (83%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||||||||||| ||||| ||||| |||||||||||| || ||||| Sbjct: 85036 tatgggacaaaaaataaatccacttggtttcagactgggtacaacccaaggtcatcattc 84977 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaag 140 | ||||||| ||||||| |||||||||||||| ||| |||| |||||| |||| Sbjct: 84976 cctttggttttcacaacccaaaaattattctgagggtttacaagaagataaaaaaataag 84917 Query: 141 ggattgtatcaagaactatatacaaaagaata 172 |||||||||||||| ||| | |||||||||| Sbjct: 84916 agattgtatcaagaattatgtccaaaagaata 84885 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| ||||||| |||||||| |||||||||||||| ||||| Sbjct: 84666 cctaatattcttgcagaatttatagctggacaattaaagaatagagtttcatttcgaaaa 84607 Query: 514 gcaatgaaaaaagccattgaattaac 539 ||||||||||| || ||||||||||| Sbjct: 84606 gcaatgaaaaaggctattgaattaac 84581 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 267 aattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatccatattgg 326 |||| ||| |||||| ||||||||| ||||||| |||||| ||||||||| ||| || Sbjct: 84859 aattgcacgtatagagattcaaaaaagaatcgatctgatccaggtcataatctttatggg 84800 Query: 327 attcccaaatttattaa 343 ||||||||| ||||||| Sbjct: 84799 attcccaaaattattaa 84783
>gb|DQ069457.1| Acorus americanus ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 654 Score = 113 bits (57), Expect = 7e-22 Identities = 122/146 (83%) Strand = Plus / Plus Query: 22 atgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattcc 81 ||||||||||||||||||||||| ||||| ||||||||| ||||||||| || | |||| Sbjct: 1 atgggacaaaaaataaatccacttggtttcagacttggtgcaacccaaagtcatctttcc 60 Query: 82 ttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaagg 141 ||||||||||||||||||||| ||||||| ||| ||||||||||| || || Sbjct: 61 ctttggttcgcacaaccaaaaagttattctatgggtttacaggaagatgaaaaaatacgg 120 Query: 142 gattgtatcaagaactatatacaaaa 167 || ||||||||||| ||| ||||||| Sbjct: 121 gagtgtatcaagaattatgtacaaaa 146 Score = 107 bits (54), Expect = 4e-20 Identities = 84/94 (89%) Strand = Plus / Plus Query: 460 attcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaaggcaatg 519 |||||||| |||||||||||||| ||| |||||||||||||||| || ||||| |||||| Sbjct: 376 attcttgctgaatatatagctttacaactaaaaaatagagtttcgtttcgaaaagcaatg 435 Query: 520 aaaaaagccattgaattaactaaaaaagcagata 553 |||||||| |||||||| ||| || ||||||||| Sbjct: 436 aaaaaagctattgaattgactgaacaagcagata 469 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 276 tatagaaattcaaaaagaaatcgatacgatccacgtcataatccatattggattcccaaa 335 |||||||||| ||||| ||||||| |||||| ||||||||| |||| ||||||||||| Sbjct: 186 tatagaaattaaaaaaagaatcgatctgatccaggtcataatctatatcggattcccaaa 245 Query: 336 tttatt 341 |||||| Sbjct: 246 tttatt 251
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 113 bits (57), Expect = 7e-22 Identities = 90/101 (89%) Strand = Plus / Minus Query: 440 aaccttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaatagag 499 |||||||| |||| ||||| ||||||||||||||||||||| |||||||| ||||||| Sbjct: 84232 aaccttatggacaacctaatattcttgcagaatatatagctcgacaattaaagaatagag 84173 Query: 500 tttcattccgaaaggcaatgaaaaaagccattgaattaact 540 |||| || ||||||||||||||||||| |||||||||||| Sbjct: 84172 tttcctttcgaaaggcaatgaaaaaagttattgaattaact 84132 Score = 103 bits (52), Expect = 6e-19 Identities = 126/153 (82%) Strand = Plus / Minus Query: 20 atatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccatt 79 ||||||| ||||||||||||||||||||||| |||||||| || ||||| || |||| Sbjct: 84589 atatggggcaaaaaataaatccactcggtttccgacttggtgaaaaccaaagtcatcatt 84530 Query: 80 ccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaa 139 || ||||||||||||||||||||| ||||| |||||||||||||||| || Sbjct: 84529 ccctttggttcgcacaaccaaaaagttattgcagaggtctacaggaagatgaaaaaatac 84470 Query: 140 gggattgtatcaagaactatatacaaaagaata 172 ||||||||||||||| ||| ||||||| |||| Sbjct: 84469 gggattgtatcaagatatatgtacaaaaaaata 84437 Score = 69.9 bits (35), Expect = 9e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 261 cgaagtaattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatcca 320 ||||| |||| | |||||||| ||||||||| |||| ||| |||||| ||||||||| Sbjct: 84417 cgaaggaattgcgcatatagagattcaaaaaaaaatggatctgatccaggtcataatctc 84358 Query: 321 tattggattcccaaatttattaa 343 |||||||||||||||||| |||| Sbjct: 84357 tattggattcccaaattttttaa 84335
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 111 bits (56), Expect = 3e-21 Identities = 77/84 (91%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||||||| ||| | ||||||||||||||||||||||| ||||| Sbjct: 89740 cctaatattcttgcagaatatattgctctgcaattaaaaaatagagtttcatttcgaaaa 89681 Query: 514 gcaatgaaaaaagccattgaatta 537 |||||||||||||| ||||||||| Sbjct: 89680 gcaatgaaaaaagctattgaatta 89657 Score = 93.7 bits (47), Expect = 6e-16 Identities = 80/91 (87%) Strand = Plus / Minus Query: 20 atatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccatt 79 |||||||||| |||||||||||||| ||||| |||||||| |||||||||| || | || Sbjct: 90111 atatgggacagaaaataaatccacttggtttcagacttggcacaacccaaagtcatcgtt 90052 Query: 80 ccttttggttcgcacaaccaaaaaattattc 110 || ||||||||||||||||||| ||||||| Sbjct: 90051 ccctttggttcgcacaaccaaaggattattc 90021
>emb|X13336.1|CHSORP Spinacia oleracea plastid genes rps3, rps19, rpl14, rpl16 and rpl22 for ribosomal proteins S3, S19, L14, L16 and L22 Length = 4102 Score = 105 bits (53), Expect = 2e-19 Identities = 127/154 (82%) Strand = Plus / Plus Query: 19 aatatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccat 78 |||||||||||||||||||||||||| ||||| ||||||||||||| |||| || || Sbjct: 1029 aatatgggacaaaaaataaatccacttggtttccgacttggtacaacacaaagtcattat 1088 Query: 79 tccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnnta 138 ||| ||||||| ||||||||||||| ||| | ||||||||||| |||||| || Sbjct: 1089 tccctttggttttcacaaccaaaaaactatgcagaaggtctacaagaagatcaaaaaata 1148 Query: 139 agggattgtatcaagaactatatacaaaagaata 172 ||||||||||| || || ||| ||||||| |||| Sbjct: 1149 agggattgtataaaaaattatgtacaaaaaaata 1182 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 261 cgaagtaattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatcca 320 ||||| |||| ||| ||| |||||||||||| ||||||| ||| || || |||||||| Sbjct: 1202 cgaaggaattgcacgtattgaaattcaaaaaagaatcgatctgatacaggtgataatcca 1261 Query: 321 tattggattcccaaatttattaa 343 ||| ||||||||||| ||||||| Sbjct: 1262 tatgggattcccaaaattattaa 1284 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| |||||| ||| |||| | ||| || ||||| ||||| Sbjct: 1401 cctaatattcttgcagaatttatagccggacaactaaagagtagggtatcatttcgaaaa 1460 Query: 514 gcaatgaaaaaagccattgaattaac 539 |||||||||||||| || |||||||| Sbjct: 1461 gcaatgaaaaaagctatcgaattaac 1486
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 105 bits (53), Expect = 2e-19 Identities = 127/154 (82%) Strand = Plus / Minus Query: 19 aatatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccat 78 |||||||||||||||||||||||||| ||||| ||||||||||||| |||| || || Sbjct: 81913 aatatgggacaaaaaataaatccacttggtttccgacttggtacaacacaaagtcattat 81854 Query: 79 tccttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnnta 138 ||| ||||||| ||||||||||||| ||| | ||||||||||| |||||| || Sbjct: 81853 tccctttggttttcacaaccaaaaaactatgcagaaggtctacaagaagatcaaaaaata 81794 Query: 139 agggattgtatcaagaactatatacaaaagaata 172 ||||||||||| || || ||| ||||||| |||| Sbjct: 81793 agggattgtataaaaaattatgtacaaaaaaata 81760 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 261 cgaagtaattacacatatagaaattcaaaaagaaatcgatacgatccacgtcataatcca 320 ||||| |||| ||| ||| |||||||||||| ||||||| ||| || || |||||||| Sbjct: 81740 cgaaggaattgcacgtattgaaattcaaaaaagaatcgatctgatacaggtgataatcca 81681 Query: 321 tattggattcccaaatttattaa 343 ||| ||||||||||| ||||||| Sbjct: 81680 tatgggattcccaaaattattaa 81658 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| |||||| ||| |||| | ||| || ||||| ||||| Sbjct: 81541 cctaatattcttgcagaatttatagccggacaactaaagagtagggtatcatttcgaaaa 81482 Query: 514 gcaatgaaaaaagccattgaattaac 539 |||||||||||||| || |||||||| Sbjct: 81481 gcaatgaaaaaagctatcgaattaac 81456
>gb|AF536225.1| Vigna angularis chloroplast S10B operon, partial sequence Length = 6550 Score = 103 bits (52), Expect = 6e-19 Identities = 94/108 (87%) Strand = Plus / Plus Query: 443 cttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaatagagttt 502 |||||| ||| ||||| ||||||||||||| ||||||| |||||||| |||||||||| Sbjct: 3538 cttataaacaccctaatattcttgcagaatttatagctggacaattaaagaatagagttt 3597 Query: 503 cattccgaaaggcaatgaaaaaagccattgaattaactaaaaaagcag 550 |||| || || |||||||||||||| |||||||||||| || |||||| Sbjct: 3598 catttcgtaaagcaatgaaaaaagctattgaattaactgaacaagcag 3645 Score = 81.8 bits (41), Expect = 2e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 ||||||||||||||||||||| || ||||| |||||||||||||| |||| || |||| Sbjct: 3179 tatgggacaaaaaataaatccgcttggtttcagacttggtacaactcaaagtcatgattc 3238 Query: 81 cttttggttcgcacaaccaaaaaattattctga 113 ||||||| |||||||||| ||| |||||||| Sbjct: 3239 tatttggtttgcacaaccaacaaaatattctga 3271
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 97.6 bits (49), Expect = 4e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 ||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| Sbjct: 85807 tatgggacaaaaaataaatccactcggttttcgacttggtgcaacccaagggcatcattc 85748 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagat 129 | ||||| ||||| || ||||| |||||||||||| |||| |||||| Sbjct: 85747 tctgtggtttgcacaccccaaaaaatattctgaaggtttacaagaagat 85699 Score = 85.7 bits (43), Expect = 2e-13 Identities = 85/99 (85%) Strand = Plus / Minus Query: 442 ccttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaatagagtt 501 |||||| |||| ||||| ||||| ||||||| |||||| |||||||| ||||||||| Sbjct: 85449 ccttatggacaccctaatattctcgcagaatttatagccggacaattaaagaatagagtt 85390 Query: 502 tcattccgaaaggcaatgaaaaaagccattgaattaact 540 ||||| || || |||||||||||||| |||||||||||| Sbjct: 85389 tcatttcgcaaagcaatgaaaaaagctattgaattaact 85351
>emb|AJ560717.1|OMI560717 Orobanche minor chloroplast rps19 gene (partial), rpl22 gene and rps3 gene (partial) Length = 1121 Score = 97.6 bits (49), Expect = 4e-17 Identities = 94/109 (86%) Strand = Plus / Plus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 ||||| |||||||||||||||||| | ||| |||||||||||||||||||| || ||||| Sbjct: 624 tatggcacaaaaaataaatccacttgttttcagacttggtacaacccaaaatcatcattc 683 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagat 129 ||||||| | |||| ||||||| ||||||||| || |||| |||||| Sbjct: 684 tctttggtttgtacaagcaaaaaaatattctgaaagtttacaagaagat 732 Score = 83.8 bits (42), Expect = 6e-13 Identities = 93/110 (84%) Strand = Plus / Plus Query: 440 aaccttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaatagag 499 ||||||||||| | || || ||| ||||||||| |||||| ||||||||| ||||||| Sbjct: 980 aaccttatagaaaccccaatattattgcagaatttatagccaaccaattaaataatagag 1039 Query: 500 tttcattccgaaaggcaatgaaaaaagccattgaattaactaaaaaagca 549 ||||||| |||| ||||||||||| || |||||||||||| || ||||| Sbjct: 1040 tttcatttagaaaagcaatgaaaaaggctattgaattaactgaacaagca 1089
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 97.6 bits (49), Expect = 4e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 ||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| Sbjct: 86036 tatgggacaaaaaataaatccactcggttttcgacttggtgcaacccaagggcatcattc 85977 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagat 129 | ||||| ||||| || ||||| |||||||||||| |||| |||||| Sbjct: 85976 tctgtggtttgcacaccccaaaaaatattctgaaggtttacaagaagat 85928 Score = 85.7 bits (43), Expect = 2e-13 Identities = 85/99 (85%) Strand = Plus / Minus Query: 442 ccttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaatagagtt 501 |||||| |||| ||||| ||||| ||||||| |||||| |||||||| ||||||||| Sbjct: 85678 ccttatggacaccctaatattctcgcagaatttatagccggacaattaaagaatagagtt 85619 Query: 502 tcattccgaaaggcaatgaaaaaagccattgaattaact 540 ||||| || || |||||||||||||| |||||||||||| Sbjct: 85618 tcatttcgcaaagcaatgaaaaaagctattgaattaact 85580
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 97.6 bits (49), Expect = 4e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||| Sbjct: 88199 tatgggacaaaaaataaatccacttggtttcagacttggtacaacccaaggtcatcattc 88140 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagat 129 ||||||| |||||| | ||||||||||| || ||||| || |||||| Sbjct: 88139 tatttggtttgcacaagccaaaaattattccgatggtctgcaagaagat 88091 Score = 60.0 bits (30), Expect = 9e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| |||||| || ||||| |||||||||||||| || || Sbjct: 87829 cctaatattcttgcagaatttatagccggacagttaaagaatagagtttcatttcgcaaa 87770 Query: 514 gcaatgaaaaaagccattgaattaac 539 ||||| ||||| || ||||||||||| Sbjct: 87769 gcaataaaaaaggctattgaattaac 87744
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 83.8 bits (42), Expect = 6e-13 Identities = 119/147 (80%) Strand = Plus / Plus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||| |||| || ||||| |||||||||||||| ||||| || |||| Sbjct: 42297 tatgggacaaaaaatacatccgcttggtttcagacttggtacaactcaaaatcatgattc 42356 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaag 140 ||||||| |||||||||| ||||||||| || |||| | |||||| || | Sbjct: 42357 tatttggtttgcacaaccaagaaattattccgagaatctaaaagaagataaaataatacg 42416 Query: 141 ggattgtatcaagaactatatacaaaa 167 |||||||||||||| ||||||||||| Sbjct: 42417 agattgtatcaagaattatatacaaaa 42443 Score = 56.0 bits (28), Expect = 1e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| ||||||| |||||||| |||||| |||| || | || Sbjct: 42655 cctaatattcttgcagaatttatagctggacaattaaagaatagaatttcgtttaggaaa 42714 Query: 514 gcaatgaaaaaagccattgaatta 537 ||||| |||||||| ||||||||| Sbjct: 42715 gcaatcaaaaaagctattgaatta 42738
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 83.8 bits (42), Expect = 6e-13 Identities = 84/98 (85%) Strand = Plus / Minus Query: 443 cttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaatagagttt 502 |||||| ||| ||||| ||| ||||||||| ||||||| |||||||| |||||||||| Sbjct: 82246 cttataaacaccctaatattattgcagaatttatagctggacaattaaagaatagagttt 82187 Query: 503 cattccgaaaggcaatgaaaaaagccattgaattaact 540 | || || || |||||||||||||| |||||||||||| Sbjct: 82186 cgtttcgtaaagcaatgaaaaaagctattgaattaact 82149 Score = 75.8 bits (38), Expect = 1e-10 Identities = 77/90 (85%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 ||||||||||||||||||||| || ||||| |||||||||||||| |||| || |||| Sbjct: 82605 tatgggacaaaaaataaatccgcttggtttcagacttggtacaactcaaagtcatgattc 82546 Query: 81 cttttggttcgcacaaccaaaaaattattc 110 ||||||| || ||||||| ||||||||| Sbjct: 82545 tatttggtttgctcaaccaacaaattattc 82516
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 83.8 bits (42), Expect = 6e-13 Identities = 78/90 (86%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 ||||||||||||||||||||| || ||||| |||||||||||||| |||| || |||| Sbjct: 81343 tatgggacaaaaaataaatccgcttggtttcagacttggtacaactcaaagtcatgattc 81284 Query: 81 cttttggttcgcacaaccaaaaaattattc 110 ||||||| |||||||||| ||||||||| Sbjct: 81283 tatttggtttgcacaaccaacaaattattc 81254 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 443 cttatagacagcctaacattcttgcagaatatatagctttccaattaaaaaatagagttt 502 |||||||| | ||||| ||||||||||||| ||||| ||||||||||||||||||| Sbjct: 80984 cttatagagatcctaatattcttgcagaattcatagccggacaattaaaaaatagagttt 80925 Query: 503 cattccgaaaggcaatgaaaaaagccattgaattaact 540 | || || || |||||||||||||| ||||| |||||| Sbjct: 80924 cgtttcgtaaagcaatgaaaaaagctattgagttaact 80887
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 75.8 bits (38), Expect = 1e-10 Identities = 57/62 (91%), Gaps = 1/62 (1%) Strand = Plus / Plus Query: 528 cattgaattaactaaaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtct 587 ||||||||||||||||||| || |||||| ||||||||||||||||||||| || ||||| Sbjct: 144185 cattgaattaactaaaaaa-catatataaagggagtaaaagtaaaaattgcaggccgtct 144243 Query: 588 cg 589 || Sbjct: 144244 cg 144245
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11, complete sequence Length = 102567 Score = 75.8 bits (38), Expect = 1e-10 Identities = 57/62 (91%), Gaps = 1/62 (1%) Strand = Plus / Plus Query: 528 cattgaattaactaaaaaagcagatataaggggagtaaaagtaaaaattgcgggtcgtct 587 ||||||||||||||||||| || |||||| ||||||||||||||||||||| || ||||| Sbjct: 3372 cattgaattaactaaaaaa-catatataaagggagtaaaagtaaaaattgcaggccgtct 3430 Query: 588 cg 589 || Sbjct: 3431 cg 3432
>gb|AC153125.10| Medicago truncatula clone mth2-74f16, complete sequence Length = 128458 Score = 75.8 bits (38), Expect = 1e-10 Identities = 118/147 (80%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 |||||||||||||||| |||| | ||||| |||||||||||||| | ||| || |||| Sbjct: 26668 tatgggacaaaaaatacatccgtttggtttcagacttggtacaactccaaatcatgattc 26609 Query: 81 cttttggttcgcacaaccaaaaaattattctgaaggtctacaggaagatnnnnnnntaag 140 ||||||| |||||||||||||||||||| || |||| | |||||| || | Sbjct: 26608 tatttggtttgcacaaccaaaaaattattccgagaatctaaaagaagataaaataatacg 26549 Query: 141 ggattgtatcaagaactatatacaaaa 167 |||||||||||||| ||||||||||| Sbjct: 26548 agattgtatcaagaattatatacaaaa 26522 Score = 63.9 bits (32), Expect = 6e-07 Identities = 71/84 (84%) Strand = Plus / Minus Query: 454 cctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaag 513 ||||| ||||||||||||| ||||||| |||||||| |||||| ||||||| | || Sbjct: 26310 cctaatattcttgcagaatttatagctggacaattaaagaatagaatttcatttaggaaa 26251 Query: 514 gcaatgaaaaaagccattgaatta 537 ||||| |||||||| ||||||||| Sbjct: 26250 gcaatcaaaaaagctattgaatta 26227
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 20 atatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacacc 76 ||||||||||||||||||| ||||| |||||||||||||||| ||| ||||| |||| Sbjct: 78398 atatgggacaaaaaataaacccacttggttttagacttggtataacacaaaatcacc 78342 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 515 caatgaaaaaagccattgaattaactaaaaaagcagatataa 556 ||||||||||||||||||||||| | ||||||| | |||||| Sbjct: 77969 caatgaaaaaagccattgaattagcaaaaaaaggaaatataa 77928
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 67.9 bits (34), Expect = 4e-08 Identities = 88/102 (86%), Gaps = 3/102 (2%) Strand = Plus / Minus Query: 28 caaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattccttttgg 87 |||||||||||||| |||||||| |||||||||||||| | || || |||| | |||| Sbjct: 88639 caaaaaataaatcccctcggtttcagacttggtacaactc-aagtcatcatt-cgattgg 88582 Query: 88 ttcgcacaaccaaaaaattattctgaaggtctacaggaagat 129 || |||||||||||| |||||||||| |||||||| |||||| Sbjct: 88581 tt-gcacaaccaaaagattattctgacggtctacaagaagat 88541
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 31 aaaataaatccactcggttttagacttggtacaacccaaaaacaccattccttttggttc 90 |||||||||||||| ||||||||||||||| ||||||||| | | |||| ||||||| Sbjct: 61128 aaaataaatccacttggttttagacttggtgtaacccaaaatgatcgttcccattggttc 61069 Query: 91 gcacaaccaaaaaattattc 110 ||||||| || |||||||| Sbjct: 61068 gcacaacaaaggaattattc 61049
>gb|DQ069458.1| Ginkgo biloba ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 654 Score = 60.0 bits (30), Expect = 9e-06 Identities = 78/94 (82%) Strand = Plus / Plus Query: 22 atgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattcc 81 |||||||| | ||| |||||||| ||||||||||||||| ||||||||| || | |||| Sbjct: 1 atgggacagagaattaatccacttggttttagacttggtgtaacccaaaatcatcgttcc 60 Query: 82 ttttggttcgcacaaccaaaaaattattctgaag 115 |||||| |||||| |||| ||||||| |||| Sbjct: 61 cattggtttgcacaaaaaaaatattattccgaag 94 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 494 atagagtttcattccgaaaggcaatgaaaaaagccattgaa 534 |||||||||||||| |||| || |||||||||| |||||| Sbjct: 410 atagagtttcattcagaaaaacagtgaaaaaagctattgaa 450
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 60.0 bits (30), Expect = 9e-06 Identities = 75/90 (83%) Strand = Plus / Minus Query: 22 atgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattcc 81 |||||||||||||| || ||||| |||||| |||||||| || || || || ||||| Sbjct: 82355 atgggacaaaaaattaacccacttggttttcgacttggtgtcactcagaatcatcattct 82296 Query: 82 ttttggttcgcacaaccaaaaaattattct 111 | |||||| || |||||||||||||||||| Sbjct: 82295 tattggtttgcgcaaccaaaaaattattct 82266 Score = 46.1 bits (23), Expect = 0.13 Identities = 71/87 (81%) Strand = Plus / Minus Query: 460 attcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaaggcaatg 519 ||||||||||||||||| ||||| |||||| ||| | ||||| | || ||| | ||| Sbjct: 81980 attcttgcagaatatattgctttgcaattagaaagtcgagttgcttttagaagaactatg 81921 Query: 520 aaaaaagccattgaattaactaaaaaa 546 |||||||| ||||||||| | |||||| Sbjct: 81920 aaaaaagctattgaattagcaaaaaaa 81894
>gb|U92462.1|PAU92462 Picea abies ribosomal protein L16 (rpl16) partial cds, ribosomal proteins S3 (rps3), L22 (rpl22), S19 (rps19), L2 (rpl2), and L23 (rpl23) genes, complete cds, tRNA-Ile (trnI) gene, complete sequence and psbA, ndhC and ndhK pseudogenes, chloroplast genes encoding chloroplast products Length = 4723 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 31 aaaataaatccactcggttttagacttggtacaacccaaaa 71 |||||||||||||| ||||||||||||||| ||||||||| Sbjct: 804 aaaataaatccacttggttttagacttggtgtaacccaaaa 764
>dbj|AB087471.1| Anthoceros formosae chloroplast rps3, rpl22 mRNA for ribosomal protein S3, ribosomal protein L22, complete and partial cds Length = 735 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 20 atatgggacaaaaaataaatccactcggttttagacttgg 59 |||||||||||||||| |||||||| |||||| ||||||| Sbjct: 677 atatgggacaaaaaattaatccacttggttttcgacttgg 638
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 20 atatgggacaaaaaataaatccactcggttttagacttgg 59 |||||||||||||||| |||||||| |||||| ||||||| Sbjct: 102545 atatgggacaaaaaattaatccacttggttttcgacttgg 102506
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 21 tatgggacaaaaaataaatccactcggttttagacttggtacaacccaaaaacaccattc 80 ||||||||||||||| ||||||| || ||| ||||||||||||| ||||| || ||| Sbjct: 81817 tatgggacaaaaaatccatccacttggatttcgacttggtacaactcaaaatcattgttc 81758 Query: 81 cttttggttcgcacaa 96 | ||||||||||||| Sbjct: 81757 ttattggttcgcacaa 81742
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 31 aaaataaatccactcggttttagacttggtacaacccaaaaacaccattccttttggttc 90 |||||||||||||| ||||||||||||||| ||| ||||| | | |||| ||||||| Sbjct: 63019 aaaataaatccacttggttttagacttggtgtaactcaaaatgagcgttcccattggttc 62960 Query: 91 gcacaaccaaaaaattattc 110 ||||||| || |||||||| Sbjct: 62959 gcacaacaaaggaattattc 62940
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Minus Query: 281 aaattcaaaaagaaatcgatacgatccacgtcataatccatatt 324 |||||||||| |||| | |||| |||||||||||||| |||||| Sbjct: 1887483 aaattcaaaaggaaaacaatacaatccacgtcataattcatatt 1887440
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Minus Query: 281 aaattcaaaaagaaatcgatacgatccacgtcataatccatatt 324 |||||||||| |||| | |||| |||||||||||||| |||||| Sbjct: 1887434 aaattcaaaaggaaaacaatacaatccacgtcataattcatatt 1887391
>emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128619 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Minus Query: 281 aaattcaaaaagaaatcgatacgatccacgtcataatccatatt 324 |||||||||| |||| | |||| |||||||||||||| |||||| Sbjct: 82174 aaattcaaaaggaaaacaatacaatccacgtcataattcatatt 82131
>emb|AL928752.2|CNS08CBP Oryza sativa chromosome 12, . BAC OSJNBb0034E23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 107247 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Plus Query: 281 aaattcaaaaagaaatcgatacgatccacgtcataatccatatt 324 |||||||||| |||| | |||| |||||||||||||| |||||| Sbjct: 80738 aaattcaaaaggaaaacaatacaatccacgtcataattcatatt 80781
>gb|AC004849.1| Homo sapiens PAC clone RP4-659J6 from 7, complete sequence Length = 126801 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 477 agctttccaattaaaaaatagag 499 ||||||||||||||||||||||| Sbjct: 118801 agctttccaattaaaaaatagag 118779
>gb|AC146125.2| Pan troglodytes BAC clone RP43-4K13 from 7, complete sequence Length = 172424 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 477 agctttccaattaaaaaatagag 499 ||||||||||||||||||||||| Sbjct: 131079 agctttccaattaaaaaatagag 131101
>emb|BX255929.7| Zebrafish DNA sequence from clone CH211-271P5 in linkage group 14, complete sequence Length = 147460 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 266 taattacacatatagaaattcaaaaagaaat 296 |||||||| ||||||||||| |||||||||| Sbjct: 128164 taattacaaatatagaaattaaaaaagaaat 128134
>gb|AF041468.1| Guillardia theta complete plastid genome Length = 121524 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 23 tgggacaaaaaataaatccactcggttttagactt 57 ||||||||||| |||||||| | |||||||||||| Sbjct: 102097 tgggacaaaaagtaaatccattaggttttagactt 102131
>emb|BX004822.12| Zebrafish DNA sequence from clone DKEY-18F18, complete sequence Length = 201902 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 266 taattacacatatagaaattcaaaaagaaat 296 |||||||| ||||||||||| |||||||||| Sbjct: 111422 taattacaaatatagaaattaaaaaagaaat 111392
>gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca coagulata), complete genome Length = 686194 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 458 acattcttgcagaatatatagc 479 |||||||||||||||||||||| Sbjct: 76253 acattcttgcagaatatatagc 76274
>gb|AC091298.2| Danio rerio clone 116A2, complete sequence Length = 50944 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 403 aaccagagatttaatatttcta 424 |||||||||||||||||||||| Sbjct: 15630 aaccagagatttaatatttcta 15651
>emb|BX901917.9| Zebrafish DNA sequence from clone DKEY-32E10 in linkage group 5, complete sequence Length = 238589 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 403 aaccagagatttaatatttcta 424 |||||||||||||||||||||| Sbjct: 76955 aaccagagatttaatatttcta 76976
>emb|CR385064.7| Zebrafish DNA sequence from clone CH211-236H18 in linkage group 5, complete sequence Length = 185245 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 aaccagagatttaatatttcta 424 |||||||||||||||||||||| Sbjct: 145981 aaccagagatttaatatttcta 145960
>emb|AJ459317.1|SPO459317 Sweet potato mild mottle virus partial cp gene for polyprotein, genomic RNA, isolate KAM Length = 1817 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 356 caatcgaagaattagagaaaga 377 |||||||||||||||||||||| Sbjct: 614 caatcgaagaattagagaaaga 635
>gb|AY722948.2| Borrelia garinii PBi variable plasmid segment G1a13d03.r1, WORKING DRAFT SEQUENCE Length = 2075 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 417 tatttctatcgaaaaagttaaagaa 441 ||||||||| ||||||||||||||| Sbjct: 670 tatttctattgaaaaagttaaagaa 646
>gb|AC099798.4| Homo sapiens BAC clone RP11-559E21 from 7, complete sequence Length = 131328 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 attaactctgtaaaccagaga 411 ||||||||||||||||||||| Sbjct: 64895 attaactctgtaaaccagaga 64915
>emb|AL136226.9| Human DNA sequence from clone RP3-486D24 on chromosome 6 Contains a ribosomal protein L7A (RPL7A) pseudogene and a CpG island, complete sequence Length = 72553 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaata 22 ||||||||||||||||||||| Sbjct: 72267 aaaatatagaatagaaaaata 72287
>gb|AC060225.12| Homo sapiens 3 BAC RP11-23J16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172464 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 476 tagctttccaattaaaaaata 496 ||||||||||||||||||||| Sbjct: 55771 tagctttccaattaaaaaata 55751
>emb|BX927234.8| Zebrafish DNA sequence from clone CH211-196N4 in linkage group 19, complete sequence Length = 187155 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 aaaaatatgggacaaaaaata 36 ||||||||||||||||||||| Sbjct: 96123 aaaaatatgggacaaaaaata 96103
>gb|AC125610.4| Homo sapiens 3 BAC RP11-189B7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159706 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 taattacacatatagaaattc 286 ||||||||||||||||||||| Sbjct: 83576 taattacacatatagaaattc 83596
>emb|BX323543.11| Zebrafish DNA sequence from clone DKEYP-67E1 in linkage group 25, complete sequence Length = 181520 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 aaaaatatgggacaaaaaata 36 ||||||||||||||||||||| Sbjct: 138098 aaaaatatgggacaaaaaata 138118
>ref|XM_626441.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd2_2370), partial mRNA Length = 405 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 333 aaatttattaaagaaaaaaggagca 357 ||||||||||||||||||| ||||| Sbjct: 34 aaatttattaaagaaaaaatgagca 58
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 279 agaaattcaaaaagaaatcga 299 ||||||||||||||||||||| Sbjct: 3776602 agaaattcaaaaagaaatcga 3776582 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 22 atgggacaaaaaataaatccactcggttt 50 |||||||||||| |||||||| ||||||| Sbjct: 765349 atgggacaaaaagtaaatccaatcggttt 765377
>gb|AC073181.8|AC073181 Homo sapiens clone RP13-493F23, complete sequence Length = 105036 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 391 attaactctgtaaaccagaga 411 ||||||||||||||||||||| Sbjct: 55673 attaactctgtaaaccagaga 55653
>gb|AE000784.1| Borrelia burgdorferi B31 plasmid lp28-3, complete sequence Length = 28601 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 417 tatttctatcgaaaaagttaaagaa 441 ||||||||| ||||||||||||||| Sbjct: 19118 tatttctattgaaaaagttaaagaa 19142
>gb|AC016562.7| Homo sapiens chromosome 5 clone CTC-484A9, complete sequence Length = 185774 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 taaaccagagatttaatattt 421 ||||||||||||||||||||| Sbjct: 42500 taaaccagagatttaatattt 42480
>emb|BX004814.8| Zebrafish DNA sequence from clone CH211-103I6 in linkage group 1, complete sequence Length = 171710 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 382 caaaaggaaattaactctgtaaacc 406 ||||||| ||||||||||||||||| Sbjct: 82165 caaaaggcaattaactctgtaaacc 82189
>gb|AF115283.1|AF115283 Leptospira interrogans S10-spc-alpha locus, complete sequence Length = 20709 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 22 atgggacaaaaaataaatccactcggttt 50 |||||||||||| |||||||| ||||||| Sbjct: 8905 atgggacaaaaagtaaatccaatcggttt 8933
>emb|CR792419.10| Zebrafish DNA sequence from clone DKEY-11A2 in linkage group 3, complete sequence Length = 61995 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 aaaaatatgggacaaaaaata 36 ||||||||||||||||||||| Sbjct: 5929 aaaaatatgggacaaaaaata 5909
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 22 atgggacaaaaaataaatccactcggttt 50 |||||||||||| |||||||| ||||||| Sbjct: 3466066 atgggacaaaaagtaaatccaatcggttt 3466038 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 agaaattcaaaaagaaatcga 299 ||||||||||||||||||||| Sbjct: 497460 agaaattcaaaaagaaatcga 497480
>emb|AL627212.21| Mouse DNA sequence from clone RP23-145E1 on chromosome 4, complete sequence Length = 207362 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 aaaatatagaatagaaaaata 22 ||||||||||||||||||||| Sbjct: 14895 aaaatatagaatagaaaaata 14915
>emb|AL928653.4| Mouse DNA sequence from clone RP23-410F9 on chromosome 2, complete sequence Length = 72045 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 470 aatatatagctttccaattaaaaaa 494 |||||||| |||||||||||||||| Sbjct: 63913 aatatataactttccaattaaaaaa 63937
>gb|AC137928.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0040B10, complete sequence Length = 150825 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 atttattaaagaaaaaagga 354 |||||||||||||||||||| Sbjct: 81434 atttattaaagaaaaaagga 81453
>gb|AC163295.2| Mus musculus BAC clone RP23-132K20 from chromosome 14, complete sequence Length = 212576 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 399 tgtaaaccagagatttaatatttc 422 |||||| ||||||||||||||||| Sbjct: 100139 tgtaaagcagagatttaatatttc 100116
>gb|AC117750.7| Mus musculus chromosome 8, clone RP24-325F22, complete sequence Length = 187432 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 aaatttattaaagaaaaaag 352 |||||||||||||||||||| Sbjct: 183960 aaatttattaaagaaaaaag 183941
>gb|AC078839.4| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBa0094J09, complete sequence Length = 168192 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tacaaaagaataggaaaaag 180 |||||||||||||||||||| Sbjct: 36095 tacaaaagaataggaaaaag 36076
>gb|AC114984.18| Mus musculus chromosome 18, clone RP23-248F9, complete sequence Length = 185563 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 aagaataggaaaaagggctc 185 |||||||||||||||||||| Sbjct: 135399 aagaataggaaaaagggctc 135380
>gb|U88314.4| Caenorhabditis elegans cosmid C46H11, complete sequence Length = 49293 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 acatatagaaattcaaaaagaaat 296 ||||||| |||||||||||||||| Sbjct: 252 acatataaaaattcaaaaagaaat 275
>gb|AC182652.2| Populus trichocarpa clone Pop1-120B14, complete sequence Length = 103155 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 agctttccaattaaaaaata 496 |||||||||||||||||||| Sbjct: 96748 agctttccaattaaaaaata 96767
>ref|NG_004113.1| Homo sapiens CCL3L1-CCL4L1 chemokine gene cluster (CCL3L1-CCL4L1@) on chromosome 17 Length = 149781 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 ttaaaaaatagagtttcatt 506 |||||||||||||||||||| Sbjct: 123321 ttaaaaaatagagtttcatt 123340 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 ttaaaaaatagagtttcatt 506 |||||||||||||||||||| Sbjct: 109795 ttaaaaaatagagtttcatt 109814 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 ttaaaaaatagagtttcatt 506 |||||||||||||||||||| Sbjct: 21731 ttaaaaaatagagtttcatt 21750
>gb|AC137620.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0014K18, complete sequence Length = 123508 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 atttattaaagaaaaaagga 354 |||||||||||||||||||| Sbjct: 5984 atttattaaagaaaaaagga 6003
>gb|AC168148.15| Medicago truncatula clone mth2-80b11, complete sequence Length = 111889 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 tagaaaaatatgggacaaaaaata 36 |||||| ||||||||||||||||| Sbjct: 80666 tagaaacatatgggacaaaaaata 80643
>ref|XM_715962.1| Candida albicans SC5314 hypothetical protein (CaO19_8429), mRNA Length = 1365 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 362 aagaattagagaaagatctacaaa 385 |||||||||||||||||| ||||| Sbjct: 1305 aagaattagagaaagatcaacaaa 1328
>ref|XM_715840.1| Candida albicans SC5314 hypothetical protein (CaO19_809), mRNA Length = 1365 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 362 aagaattagagaaagatctacaaa 385 |||||||||||||||||| ||||| Sbjct: 1305 aagaattagagaaagatcaacaaa 1328
>gb|AC147030.3| Pan troglodytes BAC clone RP43-95K17 from 7, complete sequence Length = 166955 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 atttattaaagaaaaaagga 354 |||||||||||||||||||| Sbjct: 56303 atttattaaagaaaaaagga 56322
>gb|DQ396875.1| Scenedesmus obliquus strain UTEX 393 chloroplast, complete genome Length = 161452 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 aaaaatatgggacaaaaaat 35 |||||||||||||||||||| Sbjct: 26158 aaaaatatgggacaaaaaat 26139
>gb|AC123075.5| Mus musculus BAC clone RP23-181C16 from chromosome 3, complete sequence Length = 198063 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 aatgaaaaaagccattgaat 535 |||||||||||||||||||| Sbjct: 90338 aatgaaaaaagccattgaat 90319
>gb|AY581120.1| Sitobion avenae cell division cycle protein 42 (cdc42) mRNA, complete cds Length = 661 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 68 aaaaacaccattccttttggttcgcaca 95 ||||||||||||||| |||||| ||||| Sbjct: 368 aaaaacaccattcctgttggttggcaca 395
>gb|AY574638.1| Rhopalosiphum padi Rho family small GTP binding protein cdc42 mRNA, complete cds Length = 1014 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 68 aaaaacaccattccttttggttcgcaca 95 ||||||||||||||| |||||| ||||| Sbjct: 514 aaaaacaccattcctgttggttggcaca 541
>gb|AC073900.6| Homo sapiens BAC clone RP11-172J11 from 7, complete sequence Length = 86735 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 atttattaaagaaaaaagga 354 |||||||||||||||||||| Sbjct: 15677 atttattaaagaaaaaagga 15658
>gb|AC101775.10| Mus musculus chromosome 19, clone RP24-116B5, complete sequence Length = 167945 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 265 gtaattacacatatagaaattcaaaaagaaat 296 ||||||| | ||||| |||||||||||||||| Sbjct: 86834 gtaattaaatatataaaaattcaaaaagaaat 86803
>gb|AY458644.1| Uncultured bacterium 562 clone EBAC000-45B06 genomic sequence Length = 61185 Score = 40.1 bits (20), Expect = 8.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 22 atgggacaaaaaataaatccactcggttttagacttggta 61 |||||||||||| |||||||| ||||||||||| |||| Sbjct: 40305 atgggacaaaaagtaaatccaacaggttttagactaggta 40344
>emb|CR762383.11| Zebrafish DNA sequence from clone DKEY-28M7 in linkage group 6, complete sequence Length = 101572 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 atagaatagaaaaatatgggacaa 30 ||||||||| |||||||||||||| Sbjct: 63285 atagaatagtaaaatatgggacaa 63262
>gb|AC132357.3| Mus musculus BAC clone RP24-120G2 from chromosome 18, complete sequence Length = 189088 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aagaataggaaaaagggctc 185 |||||||||||||||||||| Sbjct: 24927 aagaataggaaaaagggctc 24946
>gb|AC138717.2| Mus musculus BAC clone RP23-268G21 from chromosome 7, complete sequence Length = 141977 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ttattaaagaaaaaaggagc 356 |||||||||||||||||||| Sbjct: 22148 ttattaaagaaaaaaggagc 22167
>gb|AC124536.4| Mus musculus BAC clone RP23-332H4 from chromosome 3, complete sequence Length = 165047 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 taaaaaatagagtttcattc 507 |||||||||||||||||||| Sbjct: 23321 taaaaaatagagtttcattc 23302
>gb|AC004125.1|HUAC004125 Homo sapiens Chromosome 16 BAC clone CIT987SK-625P11, complete sequence Length = 194020 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 aaccaaaaaattattctgaa 114 |||||||||||||||||||| Sbjct: 47713 aaccaaaaaattattctgaa 47732
>gb|AC110508.8| Mus musculus chromosome 3, clone RP23-382L1, complete sequence Length = 224790 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 ttaaaaaatagagtttcatt 506 |||||||||||||||||||| Sbjct: 56663 ttaaaaaatagagtttcatt 56682
>ref|XM_643202.1| Entamoeba histolytica HM-1:IMSS Sec1 family protein (487.t00008) partial mRNA Length = 1590 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 tgaattaactaaaaaagcag 550 |||||||||||||||||||| Sbjct: 837 tgaattaactaaaaaagcag 856
>ref|XM_644152.1| Entamoeba histolytica HM-1:IMSS Sec1 family protein (328.t00006) partial mRNA Length = 1515 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 tgaattaactaaaaaagcag 550 |||||||||||||||||||| Sbjct: 762 tgaattaactaaaaaagcag 781
>ref|XM_644321.1| Entamoeba histolytica HM-1:IMSS Sec1 family protein (306.t00005) partial mRNA Length = 1590 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 tgaattaactaaaaaagcag 550 |||||||||||||||||||| Sbjct: 837 tgaattaactaaaaaagcag 856
>gb|AC098715.3| Mus musculus BAC clone RP23-2D23 from 7, complete sequence Length = 247835 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 caaatttattaaagaaaaaa 351 |||||||||||||||||||| Sbjct: 132881 caaatttattaaagaaaaaa 132862
>gb|AY372454.1| Uncultured marine gamma proteobacterium EB000-45B06 fosmid clone Length = 61173 Score = 40.1 bits (20), Expect = 8.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 22 atgggacaaaaaataaatccactcggttttagacttggta 61 |||||||||||| |||||||| ||||||||||| |||| Sbjct: 40304 atgggacaaaaagtaaatccaacaggttttagactaggta 40343
>gb|U88165.1| Caenorhabditis elegans cosmid F54C1, complete sequence Length = 31433 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 acatatagaaattcaaaaagaaat 296 ||||||| |||||||||||||||| Sbjct: 31285 acatataaaaattcaaaaagaaat 31308
>gb|AC102092.7| Mus musculus chromosome 3, clone RP23-20B1, complete sequence Length = 234874 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 taaaaaatagagtttcattc 507 |||||||||||||||||||| Sbjct: 90974 taaaaaatagagtttcattc 90993
>emb|AL512326.25| Human DNA sequence from clone RP11-345I18 on chromosome 1 Contains the 5' end of the ABL2 gene for v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene), a ubiquinol-cytochrome c reductase (6.4kD) subunit (UQCR) pseudogene, a pseudogene similar to mouse SET translocation, a eukaryotic translation initiation factor 4A, isoform 1 pseudogene, a UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 3 (B3GALT3) pseudogene, a cytochrome c oxidase subunit Vb (COX5B) pseudogene, the 5' end of the SOAT1 gene for sterol O-acyltransferase (acyl-Coenzyme A: cholesterol acyltransferase) 1, complete sequence Length = 187270 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 aaaccagagatttaatattt 421 |||||||||||||||||||| Sbjct: 27340 aaaccagagatttaatattt 27321
>emb|AL391123.19| Human DNA sequence from clone RP11-184L18 on chromosome 13 Contains a pseudogene similar to part of a novel protein (KIAA0802), complete sequence Length = 121496 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 374 aagatctacaaaaggaaattaact 397 ||||| |||||||||||||||||| Sbjct: 80516 aagatgtacaaaaggaaattaact 80539
>emb|AL356374.13| Human DNA sequence from clone RP11-454P17 on chromosome 6, complete sequence Length = 21183 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 aaaatatgggacaaaaaataaatc 40 |||||||||| ||||||||||||| Sbjct: 10212 aaaatatgggtcaaaaaataaatc 10235
>emb|AL031769.1|HS194O8 Human DNA sequence from clone RP1-194O8 on chromosome 6q24.1-25.3, complete sequence Length = 126839 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 aatagaaaaatggactcagg 251 |||||||||||||||||||| Sbjct: 23389 aatagaaaaatggactcagg 23408
>ref|XM_962669.1| PREDICTED: Tribolium castaneum similar to CG18578-PA (LOC656120), mRNA Length = 1587 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 aggagcaatcgaagaattagagaa 374 ||||||||| |||||||||||||| Sbjct: 237 aggagcaatggaagaattagagaa 260
>gb|AC126777.2| Homo sapiens chromosome 5 clone RP11-929P16, complete sequence Length = 88927 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 aatagaatcagactcaagtt 214 |||||||||||||||||||| Sbjct: 29244 aatagaatcagactcaagtt 29263
>emb|Z47547.1|MTCCGNME Chondrus crispus complete mitochondrial genome Length = 25836 Score = 40.1 bits (20), Expect = 8.0 Identities = 38/44 (86%) Strand = Plus / Plus Query: 22 atgggacaaaaaataaatccactcggttttagacttggtacaac 65 |||| ||||||||| |||||| | ||||||||||||| ||||| Sbjct: 6303 atggcacaaaaaattaatccaataagttttagacttggaacaac 6346
>emb|Y00329.1|CHZMRP22 Maize chloroplast rpl22 gene for ribosomal protein L22 Length = 607 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 aatagaaaaatatgggacaa 30 |||||||||||||||||||| Sbjct: 588 aatagaaaaatatgggacaa 607
>emb|X87371.1|SCX731 S.cerevisiae DNA from chromosome X (cosmids 7,31) Length = 40724 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 aaagaaaaaaggagcaatcg 361 |||||||||||||||||||| Sbjct: 29190 aaagaaaaaaggagcaatcg 29171
>gb|AC165086.4| Mus musculus BAC clone RP23-209B2 from chromosome 7, complete sequence Length = 195905 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 ttattaaagaaaaaaggagc 356 |||||||||||||||||||| Sbjct: 75375 ttattaaagaaaaaaggagc 75356
>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome Length = 1995281 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 caaaaagaaatcgatacgat 305 |||||||||||||||||||| Sbjct: 767012 caaaaagaaatcgatacgat 767031
>gb|AC087376.5| Homo sapiens chromosome 11, clone RP11-230O19, complete sequence Length = 164441 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 479 ctttccaattaaaaaatagagttt 502 |||| ||||||||||||||||||| Sbjct: 156629 cttttcaattaaaaaatagagttt 156606
>gb|AC117529.2| Homo sapiens chromosome 5 clone RP11-236F16, complete sequence Length = 162784 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 aatagaatcagactcaagtt 214 |||||||||||||||||||| Sbjct: 67382 aatagaatcagactcaagtt 67363
>emb|X56445.1|SCMRS3G Yeast nuclear DNA fragment N3/2.0 with MRS3 gene, involved in mtRNA splicing Length = 2096 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 aaagaaaaaaggagcaatcg 361 |||||||||||||||||||| Sbjct: 576 aaagaaaaaaggagcaatcg 557
>gb|DQ413230.1| Acyrthosiphon pisum isolate WHAP0364 putative Rho family small GTP binding protein cdc42 mRNA, complete cds Length = 576 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 68 aaaaacaccattccttttggttcgcaca 95 ||||||||||||||| |||||| ||||| Sbjct: 318 aaaaacaccattcctgttggttggcaca 345
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 acatatagaaattcaaaaagaaat 296 ||||| |||||||||||||||||| Sbjct: 1219119 acatagagaaattcaaaaagaaat 1219142
>gb|AC027104.6| Homo sapiens chromosome 15, clone RP11-326L17, complete sequence Length = 180202 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 aaatttattaaagaaaaaag 352 |||||||||||||||||||| Sbjct: 95312 aaatttattaaagaaaaaag 95331
>gb|AC097498.3| Homo sapiens BAC clone RP11-326N15 from 4, complete sequence Length = 144511 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 attgaattaactaaaaaagc 548 |||||||||||||||||||| Sbjct: 93150 attgaattaactaaaaaagc 93169
>gb|AC019294.7| Homo sapiens chromosome , clone RP11-24M17, complete sequence Length = 164310 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 aaatttattaaagaaaaaag 352 |||||||||||||||||||| Sbjct: 7538 aaatttattaaagaaaaaag 7557
>gb|AC013714.8| Homo sapiens chromosome , clone RP11-22P4, complete sequence Length = 140009 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 479 ctttccaattaaaaaatagagttt 502 |||| ||||||||||||||||||| Sbjct: 7609 cttttcaattaaaaaatagagttt 7586
>gb|AC131056.5| Homo sapiens chromosome 17, clone RP11-893G17, complete sequence Length = 193646 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 ttaaaaaatagagtttcatt 506 |||||||||||||||||||| Sbjct: 161558 ttaaaaaatagagtttcatt 161539 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 ttaaaaaatagagtttcatt 506 |||||||||||||||||||| Sbjct: 73494 ttaaaaaatagagtttcatt 73475 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 ttaaaaaatagagtttcatt 506 |||||||||||||||||||| Sbjct: 59968 ttaaaaaatagagtttcatt 59949
>emb|BX322541.12| Zebrafish DNA sequence from clone DKEY-78P10 in linkage group 5, complete sequence Length = 227940 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 caaatttattaaagaaaaaa 351 |||||||||||||||||||| Sbjct: 84371 caaatttattaaagaaaaaa 84352
>emb|BX537289.6| Zebrafish DNA sequence from clone DKEY-35M8 in linkage group 5, complete sequence Length = 135274 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 caaatttattaaagaaaaaa 351 |||||||||||||||||||| Sbjct: 27208 caaatttattaaagaaaaaa 27189
>gb|AC078994.3|AC078994 Homo sapiens chromosome 2 clone RP11-16B4 containing NRXN1 gene, partial cds, complete sequence Length = 179616 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 acacatatagaaattcaaaa 290 |||||||||||||||||||| Sbjct: 20380 acacatatagaaattcaaaa 20399
>gb|AC154545.2| Mus musculus BAC clone RP23-431G16 from chromosome 16, complete sequence Length = 202933 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 atagaaattcaaaaagaaat 296 |||||||||||||||||||| Sbjct: 145809 atagaaattcaaaaagaaat 145828
>gb|DQ009672.1| Homo sapiens v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene) (ABL2) gene, complete cds Length = 125255 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 aaaccagagatttaatattt 421 |||||||||||||||||||| Sbjct: 77994 aaaccagagatttaatattt 78013
>gb|AC012353.6| Homo sapiens BAC clone RP11-82P18 from 2, complete sequence Length = 203755 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 attcccaaatttattaaaga 346 |||||||||||||||||||| Sbjct: 78965 attcccaaatttattaaaga 78984
>gb|AC024174.2|T21E18 Sequence of BAC T21E18 from Arabidopsis thaliana chromosome 1, complete sequence Length = 74316 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 267 aattacacatatagaaattcaaaa 290 ||||||||||||| |||||||||| Sbjct: 8517 aattacacatataaaaattcaaaa 8540
>dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence Length = 640681 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 aatagaaaaatatgggacaa 30 |||||||||||||||||||| Sbjct: 111798 aatagaaaaatatgggacaa 111779
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome Length = 2814816 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 acatatagaaattcaaaaagaaat 296 ||||| |||||||||||||||||| Sbjct: 1142791 acatagagaaattcaaaaagaaat 1142814
>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0024G09 Length = 175565 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 473 atatagctttccaattaaaaaata 496 |||||| ||||||||||||||||| Sbjct: 62594 atatagatttccaattaaaaaata 62571
>dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0019D06 Length = 167405 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 473 atatagctttccaattaaaaaata 496 |||||| ||||||||||||||||| Sbjct: 117128 atatagatttccaattaaaaaata 117105
>dbj|AP007202.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, fosmid clone:OSJNOa054B01 Length = 36624 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 aatatagaatagaaaaatat 23 |||||||||||||||||||| Sbjct: 18252 aatatagaatagaaaaatat 18233
>dbj|AP005689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0042H24 Length = 186313 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 aatatagaatagaaaaatat 23 |||||||||||||||||||| Sbjct: 183012 aatatagaatagaaaaatat 182993
>emb|AL929109.5| Zebrafish DNA sequence from clone CH211-134D6, complete sequence Length = 197991 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 accaaaaaattattctgaag 115 |||||||||||||||||||| Sbjct: 141877 accaaaaaattattctgaag 141896
>dbj|AP004751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0494D11 Length = 149198 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 tacaaaagaataggaaaaag 180 |||||||||||||||||||| Sbjct: 31032 tacaaaagaataggaaaaag 31051
>dbj|AK024994.1| Homo sapiens cDNA: FLJ21341 fis, clone COL02653 Length = 1735 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 ttaaaaaatagagtttcatt 506 |||||||||||||||||||| Sbjct: 256 ttaaaaaatagagtttcatt 275
>gb|AC006427.13|AC006427 Homo sapiens chromosome 4 clone C0201M04, complete sequence Length = 178524 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 388 gaaattaactctgtaaaccagaga 411 |||||||||||||||||| ||||| Sbjct: 66607 gaaattaactctgtaaacaagaga 66630
>emb|Z49410.1|SCYJL135W S.cerevisiae chromosome X reading frame ORF YJL135w Length = 3345 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 aaagaaaaaaggagcaatcg 361 |||||||||||||||||||| Sbjct: 3040 aaagaaaaaaggagcaatcg 3021
>emb|Z49408.1|SCYJL133W S.cerevisiae chromosome X reading frame ORF YJL133w Length = 2496 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 aaagaaaaaaggagcaatcg 361 |||||||||||||||||||| Sbjct: 896 aaagaaaaaaggagcaatcg 877
>emb|X06239.1|SCMRS3 Yeast MRS3 gene for suppression of a mitochondrial splice defect in the first intron of the COB gene Length = 1986 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 aaagaaaaaaggagcaatcg 361 |||||||||||||||||||| Sbjct: 537 aaagaaaaaaggagcaatcg 518
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence Length = 2906179 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 515 caatgaaaaaagccattgaattaa 538 |||| ||||||||||||||||||| Sbjct: 1496448 caattaaaaaagccattgaattaa 1496471
>gb|AC113464.17| Mus musculus chromosome 8, clone RP23-183P1, complete sequence Length = 191444 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 aaatttattaaagaaaaaag 352 |||||||||||||||||||| Sbjct: 170253 aaatttattaaagaaaaaag 170272
>emb|CT033786.13| Mouse DNA sequence from clone RP24-298F18 on chromosome 14, complete sequence Length = 185421 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 399 tgtaaaccagagatttaatatttc 422 |||||| ||||||||||||||||| Sbjct: 4200 tgtaaagcagagatttaatatttc 4177
>gb|AC141895.4| Mus musculus BAC clone RP23-299L22 from 10, complete sequence Length = 178358 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 473 atatagctttccaattaaaaaata 496 ||||||||||||| |||||||||| Sbjct: 17818 atatagctttccatttaaaaaata 17795
>gb|AC087094.3| Homo sapiens chromosome 3 clone RP11-94M9 map 3p, complete sequence Length = 170876 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaatatagaatagaaaaata 22 |||||||||||||||||||| Sbjct: 126758 aaatatagaatagaaaaata 126777
>gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3p, complete sequence Length = 189097 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaatatagaatagaaaaata 22 |||||||||||||||||||| Sbjct: 2823 aaatatagaatagaaaaata 2842
>emb|AL845174.4| Mouse DNA sequence from clone RP23-156P22 on chromosome 2, complete sequence Length = 216475 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 aaagatctacaaaaggaaat 392 |||||||||||||||||||| Sbjct: 192100 aaagatctacaaaaggaaat 192119
>dbj|D45895.1| Caenorhabditis elegans DNA for troponin C, complete cds Length = 3471 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 acatatagaaattcaaaaagaaat 296 ||||||| |||||||||||||||| Sbjct: 1202 acatataaaaattcaaaaagaaat 1179
>emb|AL627086.22| Mouse DNA sequence from clone RP23-477P14 on chromosome 3, complete sequence Length = 106019 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 ttaaaaaatagagtttcatt 506 |||||||||||||||||||| Sbjct: 19000 ttaaaaaatagagtttcatt 19019 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9,606,802 Number of Sequences: 3902068 Number of extensions: 9606802 Number of successful extensions: 211000 Number of sequences better than 10.0: 203 Number of HSP's better than 10.0 without gapping: 205 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 208912 Number of HSP's gapped (non-prelim): 1990 length of query: 589 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 566 effective length of database: 17,143,297,704 effective search space: 9703106500464 effective search space used: 9703106500464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
