| Clone Name | bags36p17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_477481.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4029 Score = 289 bits (146), Expect = 6e-75 Identities = 497/614 (80%) Strand = Plus / Plus Query: 17 gctgggatttctccagatgcgagccccctaatgccagatactatgatgtctggcctgaag 76 |||||||| ||| | ||||| |||||| |||| || | ||||| || || || |||||| Sbjct: 2623 gctgggatatctgctgatgcaagccccgtaatccctggcactattatatcaggtctgaag 2682 Query: 77 aaatacaactggggcgctctctcgttcgacatcaaggtctgtaagacaaacaacacatcc 136 || ||||||||||| ||||| || || ||| ||||| |||| || ||||||||||||||| Sbjct: 2683 aagtacaactggggtgctctttcatttgacgtcaagctctgcaaaacaaacaacacatcc 2742 Query: 137 aagtcagtaatgcgggctcctggagatacacaaggctcttttattgctgaggccatcatc 196 || ||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 2743 aaatcagtgatgcgagctcctggagatacacaagggtctttcattgctgaagccatcatt 2802 Query: 197 gagcacgtcgcttcagtgctatcgcttgatgctaataatgtcaggcagaagaatttccac 256 || || || ||| || | || || |||||||| || | ||||||||| |||||||||||| Sbjct: 2803 gaacatgttgctgcaatactctcccttgatgccaacactgtcaggcaaaagaatttccac 2862 Query: 257 acatatgacagtcttgtgctgttctatccagaaagcgcaggtgaagcatcgacgtacaca 316 || ||||| || ||||| ||||||| ||||| |||||||| ||| | || || ||||| Sbjct: 2863 acctatgatagccttgttttgttctacccagacagcgcaggagaatcttctacatacacg 2922 Query: 317 ttgcattctattttcaacagattactcaggacgtcaagctacctgcatcgatctgaatcc 376 | ||||| ||||| | |||||| ||| ||||| |||||||| || ||||||| Sbjct: 2923 cttcattccatttttgatagattagcttcgacttcaagatacctgcaacgtgttgaatcc 2982 Query: 377 atcaagcattttaacaactgcaacaagtggcggaagaggggtatctcttgtgcgcccctc 436 |||||| | ||||||| ||| |||||||| ||| |||| || |||| || ||||||| Sbjct: 2983 atcaagaagtttaacagtaccaataagtggcgaaagcggggcatttcttctgtgcccctc 3042 Query: 437 atcttcaaggtggcaccaaggccagctcctggaagagtttctgtgctcaacgatggttcc 496 || || ||||| | ||| || || || || |||||||||||||||||||| ||||| ||| Sbjct: 3043 atttttaaggtagaaccgagaccggcaccaggaagagtttctgtgctcaatgatggctcc 3102 Query: 497 attgtggttgaagttggaggtgttgaggttgggcagggactgtggaccaaagtacagcag 556 ||||| ||||| |||||||| || || ||||||| ||||||||||| |||||||||||| Sbjct: 3103 attgttgttgaggttggaggagtcgaacttgggcaaggactgtggacgaaagtacagcag 3162 Query: 557 atgacggttttcgcgttgggacagttatggcctgatggatgtgaatgccttcttgataga 616 ||||| | ||| || ||||||||||| |||||| | || |||||| | |||||||| ||| Sbjct: 3163 atgacagcttttgctttgggacagttgtggcctaaggggtgtgaaggtcttcttgacaga 3222 Query: 617 gtgcgtcttcttca 630 | ||| ||||||| Sbjct: 3223 atccgtgttcttca 3236
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 289 bits (146), Expect = 6e-75 Identities = 497/614 (80%) Strand = Plus / Plus Query: 17 gctgggatttctccagatgcgagccccctaatgccagatactatgatgtctggcctgaag 76 |||||||| ||| | ||||| |||||| |||| || | ||||| || || || |||||| Sbjct: 10767556 gctgggatatctgctgatgcaagccccgtaatccctggcactattatatcaggtctgaag 10767615 Query: 77 aaatacaactggggcgctctctcgttcgacatcaaggtctgtaagacaaacaacacatcc 136 || ||||||||||| ||||| || || ||| ||||| |||| || ||||||||||||||| Sbjct: 10767616 aagtacaactggggtgctctttcatttgacgtcaagctctgcaaaacaaacaacacatcc 10767675 Query: 137 aagtcagtaatgcgggctcctggagatacacaaggctcttttattgctgaggccatcatc 196 || ||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 10767676 aaatcagtgatgcgagctcctggagatacacaagggtctttcattgctgaagccatcatt 10767735 Query: 197 gagcacgtcgcttcagtgctatcgcttgatgctaataatgtcaggcagaagaatttccac 256 || || || ||| || | || || |||||||| || | ||||||||| |||||||||||| Sbjct: 10767736 gaacatgttgctgcaatactctcccttgatgccaacactgtcaggcaaaagaatttccac 10767795 Query: 257 acatatgacagtcttgtgctgttctatccagaaagcgcaggtgaagcatcgacgtacaca 316 || ||||| || ||||| ||||||| ||||| |||||||| ||| | || || ||||| Sbjct: 10767796 acctatgatagccttgttttgttctacccagacagcgcaggagaatcttctacatacacg 10767855 Query: 317 ttgcattctattttcaacagattactcaggacgtcaagctacctgcatcgatctgaatcc 376 | ||||| ||||| | |||||| ||| ||||| |||||||| || ||||||| Sbjct: 10767856 cttcattccatttttgatagattagcttcgacttcaagatacctgcaacgtgttgaatcc 10767915 Query: 377 atcaagcattttaacaactgcaacaagtggcggaagaggggtatctcttgtgcgcccctc 436 |||||| | ||||||| ||| |||||||| ||| |||| || |||| || ||||||| Sbjct: 10767916 atcaagaagtttaacagtaccaataagtggcgaaagcggggcatttcttctgtgcccctc 10767975 Query: 437 atcttcaaggtggcaccaaggccagctcctggaagagtttctgtgctcaacgatggttcc 496 || || ||||| | ||| || || || || |||||||||||||||||||| ||||| ||| Sbjct: 10767976 atttttaaggtagaaccgagaccggcaccaggaagagtttctgtgctcaatgatggctcc 10768035 Query: 497 attgtggttgaagttggaggtgttgaggttgggcagggactgtggaccaaagtacagcag 556 ||||| ||||| |||||||| || || ||||||| ||||||||||| |||||||||||| Sbjct: 10768036 attgttgttgaggttggaggagtcgaacttgggcaaggactgtggacgaaagtacagcag 10768095 Query: 557 atgacggttttcgcgttgggacagttatggcctgatggatgtgaatgccttcttgataga 616 ||||| | ||| || ||||||||||| |||||| | || |||||| | |||||||| ||| Sbjct: 10768096 atgacagcttttgctttgggacagttgtggcctaaggggtgtgaaggtcttcttgacaga 10768155 Query: 617 gtgcgtcttcttca 630 | ||| ||||||| Sbjct: 10768156 atccgtgttcttca 10768169 Score = 246 bits (124), Expect = 8e-62 Identities = 496/620 (80%) Strand = Plus / Plus Query: 17 gctgggatttctccagatgcgagccccctaatgccagatactatgatgtctggcctgaag 76 |||||||| ||| | ||||| |||||| |||| || | ||||| || || || |||||| Sbjct: 10794926 gctgggatatctgctgatgcaagccccataatccctggcactattatatcaggtctgaag 10794985 Query: 77 aaatacaactggggcgctctctcgttcgacatcaaggtctgtaagacaaacaacacatcc 136 || ||||||||||| ||||| || || || ||||| |||| || ||||||||||||||| Sbjct: 10794986 aagtacaactggggtgctctttcatttgatgtcaagctctgcaaaacaaacaacacatcc 10795045 Query: 137 aagtcagtaatgcgggctcctggagatacacaaggctcttttattgctgaggccatcatc 196 || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| |||||||| Sbjct: 10795046 aaatcagtgatgcgagctcctggagaaacacaagggtctttgattgctgaagccatcatt 10795105 Query: 197 gagcacgtcgcttcagtgctatcgcttgatgctaataatgtcaggcagaagaatttccac 256 || || |||||| |||| || || ||||| || || | |||||||||||||||||||||| Sbjct: 10795106 gaacatgtcgctgcagtactctcccttgacgccaacactgtcaggcagaagaatttccac 10795165 Query: 257 acatatgacagtcttgtgctgttctatccagaaagcgcaggtgaagcatcgacgtacaca 316 | ||||| || ||||| ||||||| || ||||||||||| ||| | || ||||||||| Sbjct: 10795166 tcctatgatagccttgttttgttctacccggaaagcgcaggcgaatcgtctacgtacaca 10795225 Query: 317 ttgcattctattttcaacagattactcaggacgtcaagctacctgcatcgatctgaatcc 376 || ||||||||||| |||||||| || || |||||||| | || |||||||| Sbjct: 10795226 ttacattctatttttgacagattagcttcaacttctagctacctaaaacgtgctgaatcc 10795285 Query: 377 atcaagcattttaacaactgcaacaagtggcggaagaggggtatctcttgtgcgcccctc 436 |||||| | ||||||| ||||| |||||||| ||| |||| || |||| || ||||||| Sbjct: 10795286 atcaagaagtttaacagttgcaataagtggcgaaagcggggcatttcttctgtgcccctc 10795345 Query: 437 atcttcaaggtggcaccaaggccagctcctggaagagtttctgtgctcaacgatggttcc 496 || | ||||| | || ||||| ||||||||||||||||| |||| ||||| ||| Sbjct: 10795346 attctgaaggtaagagtgagaccagcacctggaagagtttctgtactcagtgatggctcc 10795405 Query: 497 attgtggttgaagttggaggtgttgaggttgggcagggactgtggaccaaagtacagcag 556 ||||| | || ||||| || | || ||||||| ||||| ||||| |||||||||||| Sbjct: 10795406 attgttatcgaggttggtgggatcgaacttgggcaaggactttggacaaaagtacagcag 10795465 Query: 557 atgacggttttcgcgttgggacagttatggcctgatggatgtgaatgccttcttgataga 616 ||| |||||| || |||||||| || |||||| | || |||||| | |||||||| ||| Sbjct: 10795466 atggcggtttatgctttgggacaattgtggcctaacgggtgtgaaggtcttcttgacaga 10795525 Query: 617 gtgcgtcttcttcaggctga 636 | ||| |||||||| |||| Sbjct: 10795526 atccgtgttcttcagtctga 10795545
>dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0557D09 Length = 135315 Score = 289 bits (146), Expect = 6e-75 Identities = 497/614 (80%) Strand = Plus / Plus Query: 17 gctgggatttctccagatgcgagccccctaatgccagatactatgatgtctggcctgaag 76 |||||||| ||| | ||||| |||||| |||| || | ||||| || || || |||||| Sbjct: 97002 gctgggatatctgctgatgcaagccccgtaatccctggcactattatatcaggtctgaag 97061 Query: 77 aaatacaactggggcgctctctcgttcgacatcaaggtctgtaagacaaacaacacatcc 136 || ||||||||||| ||||| || || ||| ||||| |||| || ||||||||||||||| Sbjct: 97062 aagtacaactggggtgctctttcatttgacgtcaagctctgcaaaacaaacaacacatcc 97121 Query: 137 aagtcagtaatgcgggctcctggagatacacaaggctcttttattgctgaggccatcatc 196 || ||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 97122 aaatcagtgatgcgagctcctggagatacacaagggtctttcattgctgaagccatcatt 97181 Query: 197 gagcacgtcgcttcagtgctatcgcttgatgctaataatgtcaggcagaagaatttccac 256 || || || ||| || | || || |||||||| || | ||||||||| |||||||||||| Sbjct: 97182 gaacatgttgctgcaatactctcccttgatgccaacactgtcaggcaaaagaatttccac 97241 Query: 257 acatatgacagtcttgtgctgttctatccagaaagcgcaggtgaagcatcgacgtacaca 316 || ||||| || ||||| ||||||| ||||| |||||||| ||| | || || ||||| Sbjct: 97242 acctatgatagccttgttttgttctacccagacagcgcaggagaatcttctacatacacg 97301 Query: 317 ttgcattctattttcaacagattactcaggacgtcaagctacctgcatcgatctgaatcc 376 | ||||| ||||| | |||||| ||| ||||| |||||||| || ||||||| Sbjct: 97302 cttcattccatttttgatagattagcttcgacttcaagatacctgcaacgtgttgaatcc 97361 Query: 377 atcaagcattttaacaactgcaacaagtggcggaagaggggtatctcttgtgcgcccctc 436 |||||| | ||||||| ||| |||||||| ||| |||| || |||| || ||||||| Sbjct: 97362 atcaagaagtttaacagtaccaataagtggcgaaagcggggcatttcttctgtgcccctc 97421 Query: 437 atcttcaaggtggcaccaaggccagctcctggaagagtttctgtgctcaacgatggttcc 496 || || ||||| | ||| || || || || |||||||||||||||||||| ||||| ||| Sbjct: 97422 atttttaaggtagaaccgagaccggcaccaggaagagtttctgtgctcaatgatggctcc 97481 Query: 497 attgtggttgaagttggaggtgttgaggttgggcagggactgtggaccaaagtacagcag 556 ||||| ||||| |||||||| || || ||||||| ||||||||||| |||||||||||| Sbjct: 97482 attgttgttgaggttggaggagtcgaacttgggcaaggactgtggacgaaagtacagcag 97541 Query: 557 atgacggttttcgcgttgggacagttatggcctgatggatgtgaatgccttcttgataga 616 ||||| | ||| || ||||||||||| |||||| | || |||||| | |||||||| ||| Sbjct: 97542 atgacagcttttgctttgggacagttgtggcctaaggggtgtgaaggtcttcttgacaga 97601 Query: 617 gtgcgtcttcttca 630 | ||| ||||||| Sbjct: 97602 atccgtgttcttca 97615 Score = 246 bits (124), Expect = 8e-62 Identities = 496/620 (80%) Strand = Plus / Plus Query: 17 gctgggatttctccagatgcgagccccctaatgccagatactatgatgtctggcctgaag 76 |||||||| ||| | ||||| |||||| |||| || | ||||| || || || |||||| Sbjct: 124372 gctgggatatctgctgatgcaagccccataatccctggcactattatatcaggtctgaag 124431 Query: 77 aaatacaactggggcgctctctcgttcgacatcaaggtctgtaagacaaacaacacatcc 136 || ||||||||||| ||||| || || || ||||| |||| || ||||||||||||||| Sbjct: 124432 aagtacaactggggtgctctttcatttgatgtcaagctctgcaaaacaaacaacacatcc 124491 Query: 137 aagtcagtaatgcgggctcctggagatacacaaggctcttttattgctgaggccatcatc 196 || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| |||||||| Sbjct: 124492 aaatcagtgatgcgagctcctggagaaacacaagggtctttgattgctgaagccatcatt 124551 Query: 197 gagcacgtcgcttcagtgctatcgcttgatgctaataatgtcaggcagaagaatttccac 256 || || |||||| |||| || || ||||| || || | |||||||||||||||||||||| Sbjct: 124552 gaacatgtcgctgcagtactctcccttgacgccaacactgtcaggcagaagaatttccac 124611 Query: 257 acatatgacagtcttgtgctgttctatccagaaagcgcaggtgaagcatcgacgtacaca 316 | ||||| || ||||| ||||||| || ||||||||||| ||| | || ||||||||| Sbjct: 124612 tcctatgatagccttgttttgttctacccggaaagcgcaggcgaatcgtctacgtacaca 124671 Query: 317 ttgcattctattttcaacagattactcaggacgtcaagctacctgcatcgatctgaatcc 376 || ||||||||||| |||||||| || || |||||||| | || |||||||| Sbjct: 124672 ttacattctatttttgacagattagcttcaacttctagctacctaaaacgtgctgaatcc 124731 Query: 377 atcaagcattttaacaactgcaacaagtggcggaagaggggtatctcttgtgcgcccctc 436 |||||| | ||||||| ||||| |||||||| ||| |||| || |||| || ||||||| Sbjct: 124732 atcaagaagtttaacagttgcaataagtggcgaaagcggggcatttcttctgtgcccctc 124791 Query: 437 atcttcaaggtggcaccaaggccagctcctggaagagtttctgtgctcaacgatggttcc 496 || | ||||| | || ||||| ||||||||||||||||| |||| ||||| ||| Sbjct: 124792 attctgaaggtaagagtgagaccagcacctggaagagtttctgtactcagtgatggctcc 124851 Query: 497 attgtggttgaagttggaggtgttgaggttgggcagggactgtggaccaaagtacagcag 556 ||||| | || ||||| || | || ||||||| ||||| ||||| |||||||||||| Sbjct: 124852 attgttatcgaggttggtgggatcgaacttgggcaaggactttggacaaaagtacagcag 124911 Query: 557 atgacggttttcgcgttgggacagttatggcctgatggatgtgaatgccttcttgataga 616 ||| |||||| || |||||||| || |||||| | || |||||| | |||||||| ||| Sbjct: 124912 atggcggtttatgctttgggacaattgtggcctaacgggtgtgaaggtcttcttgacaga 124971 Query: 617 gtgcgtcttcttcaggctga 636 | ||| |||||||| |||| Sbjct: 124972 atccgtgttcttcagtctga 124991
>dbj|AP005100.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0018O23 Length = 142143 Score = 246 bits (124), Expect = 8e-62 Identities = 496/620 (80%) Strand = Plus / Plus Query: 17 gctgggatttctccagatgcgagccccctaatgccagatactatgatgtctggcctgaag 76 |||||||| ||| | ||||| |||||| |||| || | ||||| || || || |||||| Sbjct: 5685 gctgggatatctgctgatgcaagccccataatccctggcactattatatcaggtctgaag 5744 Query: 77 aaatacaactggggcgctctctcgttcgacatcaaggtctgtaagacaaacaacacatcc 136 || ||||||||||| ||||| || || || ||||| |||| || ||||||||||||||| Sbjct: 5745 aagtacaactggggtgctctttcatttgatgtcaagctctgcaaaacaaacaacacatcc 5804 Query: 137 aagtcagtaatgcgggctcctggagatacacaaggctcttttattgctgaggccatcatc 196 || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| |||||||| Sbjct: 5805 aaatcagtgatgcgagctcctggagaaacacaagggtctttgattgctgaagccatcatt 5864 Query: 197 gagcacgtcgcttcagtgctatcgcttgatgctaataatgtcaggcagaagaatttccac 256 || || |||||| |||| || || ||||| || || | |||||||||||||||||||||| Sbjct: 5865 gaacatgtcgctgcagtactctcccttgacgccaacactgtcaggcagaagaatttccac 5924 Query: 257 acatatgacagtcttgtgctgttctatccagaaagcgcaggtgaagcatcgacgtacaca 316 | ||||| || ||||| ||||||| || ||||||||||| ||| | || ||||||||| Sbjct: 5925 tcctatgatagccttgttttgttctacccggaaagcgcaggcgaatcgtctacgtacaca 5984 Query: 317 ttgcattctattttcaacagattactcaggacgtcaagctacctgcatcgatctgaatcc 376 || ||||||||||| |||||||| || || |||||||| | || |||||||| Sbjct: 5985 ttacattctatttttgacagattagcttcaacttctagctacctaaaacgtgctgaatcc 6044 Query: 377 atcaagcattttaacaactgcaacaagtggcggaagaggggtatctcttgtgcgcccctc 436 |||||| | ||||||| ||||| |||||||| ||| |||| || |||| || ||||||| Sbjct: 6045 atcaagaagtttaacagttgcaataagtggcgaaagcggggcatttcttctgtgcccctc 6104 Query: 437 atcttcaaggtggcaccaaggccagctcctggaagagtttctgtgctcaacgatggttcc 496 || | ||||| | || ||||| ||||||||||||||||| |||| ||||| ||| Sbjct: 6105 attctgaaggtaagagtgagaccagcacctggaagagtttctgtactcagtgatggctcc 6164 Query: 497 attgtggttgaagttggaggtgttgaggttgggcagggactgtggaccaaagtacagcag 556 ||||| | || ||||| || | || ||||||| ||||| ||||| |||||||||||| Sbjct: 6165 attgttatcgaggttggtgggatcgaacttgggcaaggactttggacaaaagtacagcag 6224 Query: 557 atgacggttttcgcgttgggacagttatggcctgatggatgtgaatgccttcttgataga 616 ||| |||||| || |||||||| || |||||| | || |||||| | |||||||| ||| Sbjct: 6225 atggcggtttatgctttgggacaattgtggcctaacgggtgtgaaggtcttcttgacaga 6284 Query: 617 gtgcgtcttcttcaggctga 636 | ||| |||||||| |||| Sbjct: 6285 atccgtgttcttcagtctga 6304
>dbj|AK105707.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E04, full insert sequence Length = 1472 Score = 153 bits (77), Expect = 9e-34 Identities = 215/261 (82%) Strand = Plus / Plus Query: 370 tgaatccatcaagcattttaacaactgcaacaagtggcggaagaggggtatctcttgtgc 429 ||||||||||||| | ||||||| ||| |||||||| ||| |||| || |||| || Sbjct: 98 tgaatccatcaagaagtttaacagtaccaataagtggcgaaagcggggcatttcttctgt 157 Query: 430 gcccctcatcttcaaggtggcaccaaggccagctcctggaagagtttctgtgctcaacga 489 ||||||||| || ||||| | ||| || || || || |||||||||||||||||||| || Sbjct: 158 gcccctcatttttaaggtagaaccgagaccggcaccaggaagagtttctgtgctcaatga 217 Query: 490 tggttccattgtggttgaagttggaggtgttgaggttgggcagggactgtggaccaaagt 549 ||| |||||||| ||||| |||||||| || || ||||||| ||||||||||| ||||| Sbjct: 218 tggctccattgttgttgaggttggaggagtcgaacttgggcaaggactgtggacgaaagt 277 Query: 550 acagcagatgacggttttcgcgttgggacagttatggcctgatggatgtgaatgccttct 609 |||||||||||| | ||| || ||||||||||| |||||| | || |||||| | ||||| Sbjct: 278 acagcagatgacagcttttgctttgggacagttgtggcctaaggggtgtgaaggtcttct 337 Query: 610 tgatagagtgcgtcttcttca 630 ||| ||| | ||| ||||||| Sbjct: 338 tgacagaatccgtgttcttca 358
>ref|XM_469935.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4068 Score = 81.8 bits (41), Expect = 3e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 71 ctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagac 123 |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 2752 ctgaagaagtacaactggggcgctctctccttcgacatcaaggtctgcaagac 2804
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 81.8 bits (41), Expect = 3e-12 Identities = 50/53 (94%) Strand = Plus / Minus Query: 71 ctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagac 123 |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 32577620 ctgaagaagtacaactggggcgctctctccttcgacatcaaggtctgcaagac 32577568 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 71 ctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagac 123 |||||||| ||||||||||| |||||||| |||||||||||| |||| ||||| Sbjct: 32567412 ctgaagaagtacaactggggggctctctccttcgacatcaagctctgcaagac 32567360
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 81.8 bits (41), Expect = 3e-12 Identities = 50/53 (94%) Strand = Plus / Minus Query: 71 ctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagac 123 |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 32668130 ctgaagaagtacaactggggcgctctctccttcgacatcaaggtctgcaagac 32668078 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 71 ctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagac 123 |||||||| ||||||||||| |||||||| |||||||||||| |||| ||||| Sbjct: 32657922 ctgaagaagtacaactggggggctctctccttcgacatcaagctctgcaagac 32657870
>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence Length = 119134 Score = 81.8 bits (41), Expect = 3e-12 Identities = 50/53 (94%) Strand = Plus / Minus Query: 71 ctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagac 123 |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 111069 ctgaagaagtacaactggggcgctctctccttcgacatcaaggtctgcaagac 111017 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 71 ctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagac 123 |||||||| ||||||||||| |||||||| |||||||||||| |||| ||||| Sbjct: 100861 ctgaagaagtacaactggggggctctctccttcgacatcaagctctgcaagac 100809
>dbj|AK121857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102I02, full insert sequence Length = 3508 Score = 81.8 bits (41), Expect = 3e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 71 ctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagac 123 |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 2050 ctgaagaagtacaactggggcgctctctccttcgacatcaaggtctgcaagac 2102
>dbj|AK100342.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082B09, full insert sequence Length = 4432 Score = 81.8 bits (41), Expect = 3e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 71 ctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagac 123 |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 2945 ctgaagaagtacaactggggcgctctctccttcgacatcaaggtctgcaagac 2997
>dbj|AK065990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044D18, full insert sequence Length = 3113 Score = 81.8 bits (41), Expect = 3e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 71 ctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagac 123 |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 1655 ctgaagaagtacaactggggcgctctctccttcgacatcaaggtctgcaagac 1707
>ref|NM_194783.1| Oryza sativa (japonica cultivar-group) putative aldehyde oxidase (OSJNAa0087H07.7), mRNA Length = 4077 Score = 77.8 bits (39), Expect = 4e-11 Identities = 111/135 (82%) Strand = Plus / Plus Query: 70 cctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagacaaacaa 129 ||||||||| |||| ||||||||||||| ||||||||||||||||||| ||||| ||| Sbjct: 2730 cctgaagaagtacagctggggcgctctcgcgttcgacatcaaggtctgcaagacgaacgt 2789 Query: 130 cacatccaagtcagtaatgcgggctcctggagatacacaaggctcttttattgctgaggc 189 | | |||||||| | ||||| ||||| || || | || ||||| || || || ||||| Sbjct: 2790 ctcgtccaagtcggccatgcgtgctccgggcgacgcgcagggctcgttcatcgccgaggc 2849 Query: 190 catcatcgagcacgt 204 |||| |||||||||| Sbjct: 2850 catcgtcgagcacgt 2864
>gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, complete sequence Length = 151533 Score = 77.8 bits (39), Expect = 4e-11 Identities = 111/135 (82%) Strand = Plus / Plus Query: 70 cctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagacaaacaa 129 ||||||||| |||| ||||||||||||| ||||||||||||||||||| ||||| ||| Sbjct: 1000 cctgaagaagtacagctggggcgctctcgcgttcgacatcaaggtctgcaagacgaacgt 1059 Query: 130 cacatccaagtcagtaatgcgggctcctggagatacacaaggctcttttattgctgaggc 189 | | |||||||| | ||||| ||||| || || | || ||||| || || || ||||| Sbjct: 1060 ctcgtccaagtcggccatgcgtgctccgggcgacgcgcagggctcgttcatcgccgaggc 1119 Query: 190 catcatcgagcacgt 204 |||| |||||||||| Sbjct: 1120 catcgtcgagcacgt 1134
>gb|AC099733.2| Oryza sativa chromosome 10 clone OSJNAa0087H07, complete sequence Length = 132268 Score = 77.8 bits (39), Expect = 4e-11 Identities = 111/135 (82%) Strand = Plus / Plus Query: 70 cctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagacaaacaa 129 ||||||||| |||| ||||||||||||| ||||||||||||||||||| ||||| ||| Sbjct: 73268 cctgaagaagtacagctggggcgctctcgcgttcgacatcaaggtctgcaagacgaacgt 73327 Query: 130 cacatccaagtcagtaatgcgggctcctggagatacacaaggctcttttattgctgaggc 189 | | |||||||| | ||||| ||||| || || | || ||||| || || || ||||| Sbjct: 73328 ctcgtccaagtcggccatgcgtgctccgggcgacgcgcagggctcgttcatcgccgaggc 73387 Query: 190 catcatcgagcacgt 204 |||| |||||||||| Sbjct: 73388 catcgtcgagcacgt 73402
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 77.8 bits (39), Expect = 4e-11 Identities = 111/135 (82%) Strand = Plus / Plus Query: 70 cctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagacaaacaa 129 ||||||||| |||| ||||||||||||| ||||||||||||||||||| ||||| ||| Sbjct: 2344268 cctgaagaagtacagctggggcgctctcgcgttcgacatcaaggtctgcaagacgaacgt 2344327 Query: 130 cacatccaagtcagtaatgcgggctcctggagatacacaaggctcttttattgctgaggc 189 | | |||||||| | ||||| ||||| || || | || ||||| || || || ||||| Sbjct: 2344328 ctcgtccaagtcggccatgcgtgctccgggcgacgcgcagggctcgttcatcgccgaggc 2344387 Query: 190 catcatcgagcacgt 204 |||| |||||||||| Sbjct: 2344388 catcgtcgagcacgt 2344402
>dbj|AK121557.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033J23, full insert sequence Length = 5069 Score = 77.8 bits (39), Expect = 4e-11 Identities = 111/135 (82%) Strand = Plus / Plus Query: 70 cctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagacaaacaa 129 ||||||||| |||| ||||||||||||| ||||||||||||||||||| ||||| ||| Sbjct: 2819 cctgaagaagtacagctggggcgctctcgcgttcgacatcaaggtctgcaagacgaacgt 2878 Query: 130 cacatccaagtcagtaatgcgggctcctggagatacacaaggctcttttattgctgaggc 189 | | |||||||| | ||||| ||||| || || | || ||||| || || || ||||| Sbjct: 2879 ctcgtccaagtcggccatgcgtgctccgggcgacgcgcagggctcgttcatcgccgaggc 2938 Query: 190 catcatcgagcacgt 204 |||| |||||||||| Sbjct: 2939 catcgtcgagcacgt 2953
>dbj|AK103597.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133E15, full insert sequence Length = 2514 Score = 77.8 bits (39), Expect = 4e-11 Identities = 111/135 (82%) Strand = Plus / Plus Query: 70 cctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagacaaacaa 129 ||||||||| |||| ||||||||||||| ||||||||||||||||||| ||||| ||| Sbjct: 263 cctgaagaagtacagctggggcgctctcgcgttcgacatcaaggtctgcaagacgaacgt 322 Query: 130 cacatccaagtcagtaatgcgggctcctggagatacacaaggctcttttattgctgaggc 189 | | |||||||| | ||||| ||||| || || | || ||||| || || || ||||| Sbjct: 323 ctcgtccaagtcggccatgcgtgctccgggcgacgcgcagggctcgttcatcgccgaggc 382 Query: 190 catcatcgagcacgt 204 |||| |||||||||| Sbjct: 383 catcgtcgagcacgt 397
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 77.8 bits (39), Expect = 4e-11 Identities = 111/135 (82%) Strand = Plus / Plus Query: 70 cctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagacaaacaa 129 ||||||||| |||| ||||||||||||| ||||||||||||||||||| ||||| ||| Sbjct: 2344219 cctgaagaagtacagctggggcgctctcgcgttcgacatcaaggtctgcaagacgaacgt 2344278 Query: 130 cacatccaagtcagtaatgcgggctcctggagatacacaaggctcttttattgctgaggc 189 | | |||||||| | ||||| ||||| || || | || ||||| || || || ||||| Sbjct: 2344279 ctcgtccaagtcggccatgcgtgctccgggcgacgcgcagggctcgttcatcgccgaggc 2344338 Query: 190 catcatcgagcacgt 204 |||| |||||||||| Sbjct: 2344339 catcgtcgagcacgt 2344353
>gb|AY109832.1| Zea mays CL1856_2 mRNA sequence Length = 4402 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 104 gacatcaaggtctgtaagacaaacaacacatccaagtcagtaatgcgggctcctggagat 163 |||| ||||||||| |||||||| | |||| ||||||| |||||| |||||||||||| Sbjct: 2794 gacaccaaggtctgcaagacaaatgtctcatcaaagtcagcaatgcgagctcctggagat 2853 Query: 164 acacaaggctcttttattgctgaggccatcatcgagca 201 || |||||||| || ||||| |||||||||||||| Sbjct: 2854 gtgcagggctctttcatcgctgaagccatcatcgagca 2891
>dbj|D88451.1| Zea mays mRNA for aldehyde oxidase, complete cds Length = 4382 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 104 gacatcaaggtctgtaagacaaacaacacatccaagtcagtaatgcgggctcctggagat 163 |||| ||||||||| |||||||| | |||| ||||||| |||||| |||||||||||| Sbjct: 2794 gacaccaaggtctgcaagacaaatgtctcatcaaagtcagcaatgcgagctcctggagat 2853 Query: 164 acacaaggctcttttattgctgaggccatcatcgagca 201 || |||||||| || ||||| |||||||||||||| Sbjct: 2854 gtgcagggctctttcatcgctgaagccatcatcgagca 2891
>ref|XM_469934.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4071 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 71 ctgaagaaatacaactggggcgctctctcgttcgacatcaaggtctgtaagac 123 |||||||| ||||||||||| |||||||| |||||||||||| |||| ||||| Sbjct: 2755 ctgaagaagtacaactggggggctctctccttcgacatcaagctctgcaagac 2807
>gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bin: 5.00, complete sequence Length = 50000 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 152 gctcctggagatacacaaggctcttttattgctgaggccatcatcgagca 201 |||||||||||| | || |||||||| |||||||| |||||||||||||| Sbjct: 23526 gctcctggagatgcgcagggctctttcattgctgaagccatcatcgagca 23477 Score = 40.1 bits (20), Expect = 8.8 Identities = 62/76 (81%) Strand = Plus / Minus Query: 488 gatggttccattgtggttgaagttggaggtgttgaggttgggcagggactgtggaccaaa 547 ||||||||||||| ||||| | |||||| |||||| | || || || ||||||| ||| Sbjct: 23190 gatggttccattgctgttgaggctggaggggttgagctaggccaagggttgtggacaaaa 23131 Query: 548 gtacagcagatgacgg 563 || |||||||||||| Sbjct: 23130 gtgaagcagatgacgg 23115
>gb|AY109831.1| Zea mays CL1856_1 mRNA sequence Length = 4333 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 152 gctcctggagatacacaaggctcttttattgctgaggccatcatcgagca 201 |||||||||||| | || |||||||| |||||||| |||||||||||||| Sbjct: 2863 gctcctggagatgcgcagggctctttcattgctgaagccatcatcgagca 2912
>dbj|D88452.1| Zea mays mRNA for aldehyde oxidase-2, complete cds Length = 4333 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 152 gctcctggagatacacaaggctcttttattgctgaggccatcatcgagca 201 |||||||||||| | || |||||||| |||||||| |||||||||||||| Sbjct: 2863 gctcctggagatgcgcagggctctttcattgctgaagccatcatcgagca 2912 Score = 48.1 bits (24), Expect = 0.036 Identities = 63/76 (82%) Strand = Plus / Plus Query: 488 gatggttccattgtggttgaagttggaggtgttgaggttgggcagggactgtggaccaaa 547 ||||||||||||| ||||| |||||||| |||||| | || || || ||||||| ||| Sbjct: 3199 gatggttccattgctgttgaggttggaggggttgagctaggccaagggttgtggacaaaa 3258 Query: 548 gtacagcagatgacgg 563 || |||||||||||| Sbjct: 3259 gtgaagcagatgacgg 3274
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 acattgcattctattttcaacagatt 339 |||||||||| ||||||||||||||| Sbjct: 14055849 acattgcattgtattttcaacagatt 14055874
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 acattgcattctattttcaacagatt 339 |||||||||| ||||||||||||||| Sbjct: 14010129 acattgcattgtattttcaacagatt 14010154
>emb|AL732536.5|CNS08C9B Oryza sativa chromosome 12, . BAC OJ1111_F12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115351 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 acattgcattctattttcaacagatt 339 |||||||||| ||||||||||||||| Sbjct: 84525 acattgcattgtattttcaacagatt 84550
>ref|NM_019140.2| Rattus norvegicus protein tyrosine phosphatase, receptor type, D (Ptprd), mRNA Length = 6040 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 caacgatggttccattgtggt 504 ||||||||||||||||||||| Sbjct: 3376 caacgatggttccattgtggt 3396
>gb|BC105753.1| Rattus norvegicus protein tyrosine phosphatase, receptor type, D, mRNA (cDNA clone MGC:124537 IMAGE:5599711), complete cds Length = 7119 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 caacgatggttccattgtggt 504 ||||||||||||||||||||| Sbjct: 3751 caacgatggttccattgtggt 3771
>ref|NM_172541.1| Mus musculus RIKEN cDNA 2010310D06 gene (2010310D06Rik), mRNA Length = 1279 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 gcaccaaggccagctcctgga 469 ||||||||||||||||||||| Sbjct: 238 gcaccaaggccagctcctgga 218
>ref|XM_754579.1| Ustilago maydis 521 hypothetical protein (UM03525.1) partial mRNA Length = 3930 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 gtggcaccaaggccagctcct 466 ||||||||||||||||||||| Sbjct: 992 gtggcaccaaggccagctcct 1012
>ref|XM_381737.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01561.1) partial mRNA Length = 4107 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 caacaagtggcggaagagggg 417 ||||||||||||||||||||| Sbjct: 3039 caacaagtggcggaagagggg 3059
>gb|AC083948.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-67P7, complete sequence Length = 214125 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 449 gcaccaaggccagctcctgga 469 ||||||||||||||||||||| Sbjct: 127326 gcaccaaggccagctcctgga 127346
>gb|AE017157.1| Chlamydophila pneumoniae TW-183, section 1 of 4 of the complete genome Length = 300923 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 616 agtgcgtcttcttcaggctga 636 ||||||||||||||||||||| Sbjct: 142542 agtgcgtcttcttcaggctga 142522
>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome Length = 1229853 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 616 agtgcgtcttcttcaggctga 636 ||||||||||||||||||||| Sbjct: 696154 agtgcgtcttcttcaggctga 696174
>dbj|AK028119.1| Mus musculus adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010310D06 product:TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA homolog [Homo sapiens], full insert sequence Length = 1279 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 gcaccaaggccagctcctgga 469 ||||||||||||||||||||| Sbjct: 238 gcaccaaggccagctcctgga 218
>gb|BC046757.1| Mus musculus RIKEN cDNA 2010310D06 gene, mRNA (cDNA clone MGC:57914 IMAGE:5693443), complete cds Length = 1271 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 gcaccaaggccagctcctgga 469 ||||||||||||||||||||| Sbjct: 197 gcaccaaggccagctcctgga 177
>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome Length = 1230230 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 616 agtgcgtcttcttcaggctga 636 ||||||||||||||||||||| Sbjct: 145047 agtgcgtcttcttcaggctga 145027
>gb|L19933.1|RATTYRPHOS Rattus norvegicus protein tyrosine phosphatase mRNA, complete cds Length = 4724 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 caacgatggttccattgtggt 504 ||||||||||||||||||||| Sbjct: 2204 caacgatggttccattgtggt 2224
>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence Length = 1226565 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 616 agtgcgtcttcttcaggctga 636 ||||||||||||||||||||| Sbjct: 144758 agtgcgtcttcttcaggctga 144738
>dbj|AK217162.1| Mus musculus cDNA, clone:Y2G0140N22, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000043378, based on BLAT search Length = 210 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 gcaccaaggccagctcctgga 469 ||||||||||||||||||||| Sbjct: 51 gcaccaaggccagctcctgga 31
>emb|BX323545.11| Mouse DNA sequence from clone RP23-358N13 on chromosome 4, complete sequence Length = 47574 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 tgctaataatgtcaggcagaa 246 ||||||||||||||||||||| Sbjct: 21456 tgctaataatgtcaggcagaa 21436
>gb|AY106434.1| Zea mays PCO077114 mRNA sequence Length = 2375 Score = 42.1 bits (21), Expect = 2.2 Identities = 75/93 (80%) Strand = Plus / Plus Query: 488 gatggttccattgtggttgaagttggaggtgttgaggttgggcagggactgtggaccaaa 547 ||||||||||| || ||||| || ||||| |||||| | || || || ||||||| ||| Sbjct: 1239 gatggttccatcgttgttgaggtcggaggggttgagataggccaagggttgtggacaaaa 1298 Query: 548 gtacagcagatgacggttttcgcgttgggacag 580 || |||||||||||| |||| ||||||||| Sbjct: 1299 gtgaagcagatgacggcattcggattgggacag 1331
>gb|BC089063.1| Rattus norvegicus similar to transmembrane protein induced by tumor necrosis factor alpha, mRNA (cDNA clone MGC:105569 IMAGE:7310299), complete cds Length = 1603 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 gcaccaaggccagctcctgga 469 ||||||||||||||||||||| Sbjct: 512 gcaccaaggccagctcctgga 492
>gb|L12329.1|RATLARPTPB Rat leukocyte common antigen-related phosphatase (LAR-PTP2) alternatively spliced mRNA (LAR-PTP2B), complete cds Length = 5383 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 caacgatggttccattgtggt 504 ||||||||||||||||||||| Sbjct: 2290 caacgatggttccattgtggt 2310
>gb|L11587.1|RATLARPTPA Rat leukocyte common antigen-related phosphatase (LAR-PTP2) mRNA, complete cds Length = 6469 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 caacgatggttccattgtggt 504 ||||||||||||||||||||| Sbjct: 3376 caacgatggttccattgtggt 3396
>ref|NM_001010945.1| Rattus norvegicus similar to transmembrane protein induced by tumor necrosis factor alpha (RGD1311474), mRNA Length = 1603 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 gcaccaaggccagctcctgga 469 ||||||||||||||||||||| Sbjct: 512 gcaccaaggccagctcctgga 492
>gb|L19180.1|RATPTPP1 Rat receptor-linked protein tyrosine phosphatase (PTP-P1) mRNA, complete cds Length = 5412 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 caacgatggttccattgtggt 504 ||||||||||||||||||||| Sbjct: 2130 caacgatggttccattgtggt 2150
>gb|L19181.1|RATPTPPS Rat receptor-linked protein tyrosine phosphatase (PTP-PS) mRNA, complete cds Length = 3835 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 caacgatggttccattgtggt 504 ||||||||||||||||||||| Sbjct: 2130 caacgatggttccattgtggt 2150
>gb|AC117827.6| Mus musculus chromosome 1, clone RP24-88L2, complete sequence Length = 213655 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 atcaagcattttaacaactg 396 |||||||||||||||||||| Sbjct: 84587 atcaagcattttaacaactg 84568
>gb|AY700581.1| Gallus gallus hepatic nuclear factor 4alpha (HNF4alpha) mRNA, complete cds Length = 1815 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 gttggaggtgttgaggttgg 528 |||||||||||||||||||| Sbjct: 153 gttggaggtgttgaggttgg 134
>ref|NM_001030855.1| Gallus gallus hepatocyte nuclear factor 4, alpha (HNF4A), mRNA Length = 1815 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 gttggaggtgttgaggttgg 528 |||||||||||||||||||| Sbjct: 153 gttggaggtgttgaggttgg 134
>gb|AC183919.2| Pan troglodytes BAC clone CH251-691O9 from chromosome 7, complete sequence Length = 188947 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 tattttcaacagattactca 344 |||||||||||||||||||| Sbjct: 132087 tattttcaacagattactca 132068
>gb|AC137942.6| Mus musculus chromosome 10, clone RP24-502K6, complete sequence Length = 173848 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 tacacattgcattctatttt 330 |||||||||||||||||||| Sbjct: 102883 tacacattgcattctatttt 102902
>ref|XM_876181.1| PREDICTED: Bos taurus polymerase (RNA) II (DNA directed) polypeptide A (220kD), transcript variant 4 (POLR2A), mRNA Length = 6411 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 gtggcaccaaggccagctcctgga 469 ||||||||| |||||||||||||| Sbjct: 1704 gtggcaccatggccagctcctgga 1681
>ref|XM_876122.1| PREDICTED: Bos taurus polymerase (RNA) II (DNA directed) polypeptide A (220kD), transcript variant 3 (POLR2A), mRNA Length = 6090 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 gtggcaccaaggccagctcctgga 469 ||||||||| |||||||||||||| Sbjct: 1704 gtggcaccatggccagctcctgga 1681
>ref|XM_876055.1| PREDICTED: Bos taurus polymerase (RNA) II (DNA directed) polypeptide A (220kD), transcript variant 2 (POLR2A), mRNA Length = 5974 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 gtggcaccaaggccagctcctgga 469 ||||||||| |||||||||||||| Sbjct: 1456 gtggcaccatggccagctcctgga 1433
>ref|XM_596010.2| PREDICTED: Bos taurus polymerase (RNA) II (DNA directed) polypeptide A (220kD), transcript variant 1 (POLR2A), mRNA Length = 6405 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 gtggcaccaaggccagctcctgga 469 ||||||||| |||||||||||||| Sbjct: 1704 gtggcaccatggccagctcctgga 1681
>gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, complete sequence Length = 175569 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 tacacattgcattctatttt 330 |||||||||||||||||||| Sbjct: 152876 tacacattgcattctatttt 152857
>emb|AL162385.16| Human DNA sequence from clone RP11-244N9 on chromosome 9 Contains the 3' end of the gene for tudor repeat associator with PCTAIRE 2 (PCTAIRE2BP), the TMOD gene for tropomodulin (ETMOD, D9S57E), the 5' end of the NCBP1 gene for nuclear cap binding protein subunit 1, 80kDa (NCBP, CBP80), two novel genes, a novel gene PP1489 (LOC158427), and four CpG islands, complete sequence Length = 175517 Score = 40.1 bits (20), Expect = 8.8 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 152 gctcctggagatacacaaggctctttta 179 |||||||||| ||||||||||||||||| Sbjct: 24145 gctcctggag-tacacaaggctctttta 24119
>emb|AL138960.16| Human DNA sequence from clone RP11-269C23 on chromosome 13, complete sequence Length = 144836 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 tggcctgatggatgtgaatg 603 |||||||||||||||||||| Sbjct: 34130 tggcctgatggatgtgaatg 34111
>ref|XM_791822.1| PREDICTED: Strongylocentrotus purpuratus similar to elongation protein 3 homolog (LOC592291), mRNA Length = 1254 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 caaggtggcaccaaggccag 461 |||||||||||||||||||| Sbjct: 884 caaggtggcaccaaggccag 865
>ref|XM_791803.1| PREDICTED: Strongylocentrotus purpuratus similar to elongation protein 3 homolog (LOC592271), mRNA Length = 1185 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 caaggtggcaccaaggccag 461 |||||||||||||||||||| Sbjct: 845 caaggtggcaccaaggccag 826
>gb|AC006454.4| Homo sapiens PAC clone RP5-852P6 from 7, complete sequence Length = 153203 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 ccaaggccagctcctggaag 471 |||||||||||||||||||| Sbjct: 100857 ccaaggccagctcctggaag 100876
>gb|AC160472.4| Mus musculus BAC clone RP24-97J22 from chromosome 1, complete sequence Length = 170576 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 ggaagagtttctgtgctcaa 486 |||||||||||||||||||| Sbjct: 113393 ggaagagtttctgtgctcaa 113374
>emb|CR457443.5| Zebrafish DNA sequence from clone CH211-202J20 in linkage group 15, complete sequence Length = 146746 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ggcagaagaatttccacaca 259 |||||||||||||||||||| Sbjct: 34414 ggcagaagaatttccacaca 34395
>gb|AC090848.4| Homo sapiens chromosome 11, clone RP11-780O24, complete sequence Length = 169559 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ctaatgccagatactatgat 63 |||||||||||||||||||| Sbjct: 126689 ctaatgccagatactatgat 126708
>dbj|AK039874.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430024C02 product:unclassifiable, full insert sequence Length = 3245 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 atcaagcattttaacaactg 396 |||||||||||||||||||| Sbjct: 2350 atcaagcattttaacaactg 2369
>emb|BX247877.13| Zebrafish DNA sequence from clone DKEY-16J24, complete sequence Length = 189537 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 260 tatgacagtcttgtgctgttctatccag 287 |||||||||| | ||||||||||||||| Sbjct: 41647 tatgacagtcgtttgctgttctatccag 41674
>gb|AC074366.6| Homo sapiens BAC clone RP11-255N19 from 2, complete sequence Length = 111517 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 555 agatgacggttttcgcgttg 574 |||||||||||||||||||| Sbjct: 101798 agatgacggttttcgcgttg 101779
>dbj|AP001652.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-780O24, complete sequences Length = 169560 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ctaatgccagatactatgat 63 |||||||||||||||||||| Sbjct: 42871 ctaatgccagatactatgat 42852
>gb|AC151572.2| Mus musculus BAC clone RP23-388I22 from 1, complete sequence Length = 187409 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 ggaagagtttctgtgctcaa 486 |||||||||||||||||||| Sbjct: 177153 ggaagagtttctgtgctcaa 177172
>dbj|AB238208.1| Brassica rapa BrAO1 mRNA for aldehyde oxidase, complete cds Length = 4378 Score = 40.1 bits (20), Expect = 8.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 152 gctcctggagatacacaaggctcttttattgctgaggccatcat 195 |||||||||||| |||||| |||| ||| ||||| |||||||| Sbjct: 2934 gctcctggagatgtacaaggatcttatatagctgaagccatcat 2977
>gb|L41887.1|HUMSFRS Homo sapiens splicing factor, arginine/serine-rich 7 (SFRS7) gene, complete cds Length = 8213 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 555 agatgacggttttcgcgttg 574 |||||||||||||||||||| Sbjct: 795 agatgacggttttcgcgttg 814 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,229,538 Number of Sequences: 3902068 Number of extensions: 5229538 Number of successful extensions: 98307 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 97992 Number of HSP's gapped (non-prelim): 312 length of query: 647 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 624 effective length of database: 17,143,297,704 effective search space: 10697417767296 effective search space used: 10697417767296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)