ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags37e24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_549989.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3562 Score = 240 bits (121), Expect = 5e-60 Identities = 263/309 (85%), Gaps = 1/309 (0%) Strand = Plus / Plus Query: 12 catgaattcttcccaggagcagtatgctgtggaaaaggtctctgatgatgttgaccagcc 71 ||||||||||| || ||||||||||| ||||| ||||| | |||||||||| | | Sbjct: 1702 catgaattctttcc-ggagcagtatgtcgtggacaaggttggtaatgatgttgatgattc 1760 Query: 72 ttctgaaacaaggcgtgtgggtcttgttagaagtgttaatgcaaaggaccgaactgtgtc 131 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1761 ttctgaaacaaaacgtgtgggtcttgttagaagtgttaatgcaaaggaccgaactgcatc 1820 Query: 132 tgtatcatggtttaggtcttcgttgcactcacaggaacctagggtaattgagtgcactga 191 |||||||||||||| | |||| || ||| || |||| || || | ||| ||||||| ||| Sbjct: 1821 tgtatcatggtttaagccttcattacacccagaggagcccagagaaatcgagtgcaatga 1880 Query: 192 agttgttagtgcatatgaacttgatggccacccggattatgattattgctatggagatgt 251 | |||| |||||||||||| | |||||||| || |||||||||||||||||||||||||| Sbjct: 1881 aattgtgagtgcatatgaattggatggccatccagattatgattattgctatggagatgt 1940 Query: 252 cgttgttcgcttgccatctgtttcacatcctatggaatcatccaatggtggaaacaccat 311 ||||||||||||||||||||||||| ||| | |||||| ||||| | | |||||||| Sbjct: 1941 tgttgttcgcttgccatctgtttcactgcctgttgaatcaaccaatagggagaacaccat 2000 Query: 312 ggagctgga 320 ||| ||||| Sbjct: 2001 ggaactgga 2009 Score = 168 bits (85), Expect = 1e-38 Identities = 222/268 (82%) Strand = Plus / Plus Query: 381 tgcagaggaacagctttcacagaaggaatctagttcagaagttacccacctctcatgggt 440 ||||||||||||| || ||||||||||||| |||| ||| |||| ||| ||||||| Sbjct: 2052 tgcagaggaacagtttccacagaaggaatccagtttggaatttactagcctttcatgggc 2111 Query: 441 tggaaatatagtgggcttccaagatggtgagattgaagtcacttggggtgatgggtcggt 500 ||| |||||||| || || |||| ||||| ||| ||||| |||||| ||||| || || Sbjct: 2112 tggtaatatagttggttttgaagacggtgatattatagtcatttggggcgatggttcagt 2171 Query: 501 gtcaaaggttgggcctcatgagatatatgttgttggccgagaagatgatggtggctcgct 560 |||||||||||| || ||||| |||||||||||||| || ||||||||||||| ||| || Sbjct: 2172 gtcaaaggttggtccacatgaaatatatgttgttggtcgtgaagatgatggtgcctcact 2231 Query: 561 agatgatggagctccttctgatgctggtagctgggagacagntgatgacaatgaaatgga 620 |||||||||| || | ||||| || |||||||||||| | |||||||||| ||| ||| Sbjct: 2232 agatgatggaactgccagtgatggtgctagctgggagactgttgatgacaatcaaacgga 2291 Query: 621 cttgcctgatgatcctgcaaatgatgat 648 |||||||||||| ||||| | |||||| Sbjct: 2292 tttgcctgatgattctgcacaggatgat 2319
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 240 bits (121), Expect = 5e-60 Identities = 263/309 (85%), Gaps = 1/309 (0%) Strand = Plus / Plus Query: 12 catgaattcttcccaggagcagtatgctgtggaaaaggtctctgatgatgttgaccagcc 71 ||||||||||| || ||||||||||| ||||| ||||| | |||||||||| | | Sbjct: 1423784 catgaattctttcc-ggagcagtatgtcgtggacaaggttggtaatgatgttgatgattc 1423842 Query: 72 ttctgaaacaaggcgtgtgggtcttgttagaagtgttaatgcaaaggaccgaactgtgtc 131 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1423843 ttctgaaacaaaacgtgtgggtcttgttagaagtgttaatgcaaaggaccgaactgcatc 1423902 Query: 132 tgtatcatggtttaggtcttcgttgcactcacaggaacctagggtaattgagtgcactga 191 |||||||||||||| | |||| || ||| || |||| || || | ||| ||||||| ||| Sbjct: 1423903 tgtatcatggtttaagccttcattacacccagaggagcccagagaaatcgagtgcaatga 1423962 Query: 192 agttgttagtgcatatgaacttgatggccacccggattatgattattgctatggagatgt 251 | |||| |||||||||||| | |||||||| || |||||||||||||||||||||||||| Sbjct: 1423963 aattgtgagtgcatatgaattggatggccatccagattatgattattgctatggagatgt 1424022 Query: 252 cgttgttcgcttgccatctgtttcacatcctatggaatcatccaatggtggaaacaccat 311 ||||||||||||||||||||||||| ||| | |||||| ||||| | | |||||||| Sbjct: 1424023 tgttgttcgcttgccatctgtttcactgcctgttgaatcaaccaatagggagaacaccat 1424082 Query: 312 ggagctgga 320 ||| ||||| Sbjct: 1424083 ggaactgga 1424091 Score = 109 bits (55), Expect = 1e-20 Identities = 114/134 (85%) Strand = Plus / Plus Query: 506 aggttgggcctcatgagatatatgttgttggccgagaagatgatggtggctcgctagatg 565 ||||||| || ||||| |||||||||||||| || ||||||||||||| ||| ||||||| Sbjct: 1424336 aggttggtccacatgaaatatatgttgttggtcgtgaagatgatggtgcctcactagatg 1424395 Query: 566 atggagctccttctgatgctggtagctgggagacagntgatgacaatgaaatggacttgc 625 ||||| || | ||||| || |||||||||||| | |||||||||| ||| ||| |||| Sbjct: 1424396 atggaactgccagtgatggtgctagctgggagactgttgatgacaatcaaacggatttgc 1424455 Query: 626 ctgatgatcctgca 639 |||||||| ||||| Sbjct: 1424456 ctgatgattctgca 1424469 Score = 65.9 bits (33), Expect = 2e-07 Identities = 105/129 (81%) Strand = Plus / Plus Query: 381 tgcagaggaacagctttcacagaaggaatctagttcagaagttacccacctctcatgggt 440 ||||||||||||| || ||||||||||||| |||| ||| |||| ||| ||||||| Sbjct: 1424134 tgcagaggaacagtttccacagaaggaatccagtttggaatttactagcctttcatgggc 1424193 Query: 441 tggaaatatagtgggcttccaagatggtgagattgaagtcacttggggtgatgggtcggt 500 ||| |||||||| || || |||| ||||| ||| ||||| |||||| ||||| || || Sbjct: 1424194 tggtaatatagttggttttgaagacggtgatattatagtcatttggggcgatggttcagt 1424253 Query: 501 gtcaaaggt 509 ||||||||| Sbjct: 1424254 gtcaaaggt 1424262
>dbj|AP003233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0037C04 Length = 137879 Score = 240 bits (121), Expect = 5e-60 Identities = 263/309 (85%), Gaps = 1/309 (0%) Strand = Plus / Plus Query: 12 catgaattcttcccaggagcagtatgctgtggaaaaggtctctgatgatgttgaccagcc 71 ||||||||||| || ||||||||||| ||||| ||||| | |||||||||| | | Sbjct: 121835 catgaattctttcc-ggagcagtatgtcgtggacaaggttggtaatgatgttgatgattc 121893 Query: 72 ttctgaaacaaggcgtgtgggtcttgttagaagtgttaatgcaaaggaccgaactgtgtc 131 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 121894 ttctgaaacaaaacgtgtgggtcttgttagaagtgttaatgcaaaggaccgaactgcatc 121953 Query: 132 tgtatcatggtttaggtcttcgttgcactcacaggaacctagggtaattgagtgcactga 191 |||||||||||||| | |||| || ||| || |||| || || | ||| ||||||| ||| Sbjct: 121954 tgtatcatggtttaagccttcattacacccagaggagcccagagaaatcgagtgcaatga 122013 Query: 192 agttgttagtgcatatgaacttgatggccacccggattatgattattgctatggagatgt 251 | |||| |||||||||||| | |||||||| || |||||||||||||||||||||||||| Sbjct: 122014 aattgtgagtgcatatgaattggatggccatccagattatgattattgctatggagatgt 122073 Query: 252 cgttgttcgcttgccatctgtttcacatcctatggaatcatccaatggtggaaacaccat 311 ||||||||||||||||||||||||| ||| | |||||| ||||| | | |||||||| Sbjct: 122074 tgttgttcgcttgccatctgtttcactgcctgttgaatcaaccaatagggagaacaccat 122133 Query: 312 ggagctgga 320 ||| ||||| Sbjct: 122134 ggaactgga 122142 Score = 109 bits (55), Expect = 1e-20 Identities = 114/134 (85%) Strand = Plus / Plus Query: 506 aggttgggcctcatgagatatatgttgttggccgagaagatgatggtggctcgctagatg 565 ||||||| || ||||| |||||||||||||| || ||||||||||||| ||| ||||||| Sbjct: 122387 aggttggtccacatgaaatatatgttgttggtcgtgaagatgatggtgcctcactagatg 122446 Query: 566 atggagctccttctgatgctggtagctgggagacagntgatgacaatgaaatggacttgc 625 ||||| || | ||||| || |||||||||||| | |||||||||| ||| ||| |||| Sbjct: 122447 atggaactgccagtgatggtgctagctgggagactgttgatgacaatcaaacggatttgc 122506 Query: 626 ctgatgatcctgca 639 |||||||| ||||| Sbjct: 122507 ctgatgattctgca 122520 Score = 65.9 bits (33), Expect = 2e-07 Identities = 105/129 (81%) Strand = Plus / Plus Query: 381 tgcagaggaacagctttcacagaaggaatctagttcagaagttacccacctctcatgggt 440 ||||||||||||| || ||||||||||||| |||| ||| |||| ||| ||||||| Sbjct: 122185 tgcagaggaacagtttccacagaaggaatccagtttggaatttactagcctttcatgggc 122244 Query: 441 tggaaatatagtgggcttccaagatggtgagattgaagtcacttggggtgatgggtcggt 500 ||| |||||||| || || |||| ||||| ||| ||||| |||||| ||||| || || Sbjct: 122245 tggtaatatagttggttttgaagacggtgatattatagtcatttggggcgatggttcagt 122304 Query: 501 gtcaaaggt 509 ||||||||| Sbjct: 122305 gtcaaaggt 122313
>dbj|AK103631.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133P14, full insert sequence Length = 3560 Score = 240 bits (121), Expect = 5e-60 Identities = 263/309 (85%), Gaps = 1/309 (0%) Strand = Plus / Plus Query: 12 catgaattcttcccaggagcagtatgctgtggaaaaggtctctgatgatgttgaccagcc 71 ||||||||||| || ||||||||||| ||||| ||||| | |||||||||| | | Sbjct: 1700 catgaattctttcc-ggagcagtatgtcgtggacaaggttggtaatgatgttgatgattc 1758 Query: 72 ttctgaaacaaggcgtgtgggtcttgttagaagtgttaatgcaaaggaccgaactgtgtc 131 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1759 ttctgaaacaaaacgtgtgggtcttgttagaagtgttaatgcaaaggaccgaactgcatc 1818 Query: 132 tgtatcatggtttaggtcttcgttgcactcacaggaacctagggtaattgagtgcactga 191 |||||||||||||| | |||| || ||| || |||| || || | ||| ||||||| ||| Sbjct: 1819 tgtatcatggtttaagccttcattacacccagaggagcccagagaaatcgagtgcaatga 1878 Query: 192 agttgttagtgcatatgaacttgatggccacccggattatgattattgctatggagatgt 251 | |||| |||||||||||| | |||||||| || |||||||||||||||||||||||||| Sbjct: 1879 aattgtgagtgcatatgaattggatggccatccagattatgattattgctatggagatgt 1938 Query: 252 cgttgttcgcttgccatctgtttcacatcctatggaatcatccaatggtggaaacaccat 311 ||||||||||||||||||||||||| ||| | |||||| ||||| | | |||||||| Sbjct: 1939 tgttgttcgcttgccatctgtttcactgcctgttgaatcaaccaatagggagaacaccat 1998 Query: 312 ggagctgga 320 ||| ||||| Sbjct: 1999 ggaactgga 2007 Score = 168 bits (85), Expect = 1e-38 Identities = 222/268 (82%) Strand = Plus / Plus Query: 381 tgcagaggaacagctttcacagaaggaatctagttcagaagttacccacctctcatgggt 440 ||||||||||||| || ||||||||||||| |||| ||| |||| ||| ||||||| Sbjct: 2050 tgcagaggaacagtttccacagaaggaatccagtttggaatttactagcctttcatgggc 2109 Query: 441 tggaaatatagtgggcttccaagatggtgagattgaagtcacttggggtgatgggtcggt 500 ||| |||||||| || || |||| ||||| ||| ||||| |||||| ||||| || || Sbjct: 2110 tggtaatatagttggttttgaagacggtgatattatagtcatttggggcgatggttcagt 2169 Query: 501 gtcaaaggttgggcctcatgagatatatgttgttggccgagaagatgatggtggctcgct 560 |||||||||||| || ||||| |||||||||||||| || ||||||||||||| ||| || Sbjct: 2170 gtcaaaggttggtccacatgaaatatatgttgttggtcgtgaagatgatggtgcctcact 2229 Query: 561 agatgatggagctccttctgatgctggtagctgggagacagntgatgacaatgaaatgga 620 |||||||||| || | ||||| || |||||||||||| | |||||||||| ||| ||| Sbjct: 2230 agatgatggaactgccagtgatggtgctagctgggagactgttgatgacaatcaaacgga 2289 Query: 621 cttgcctgatgatcctgcaaatgatgat 648 |||||||||||| ||||| | |||||| Sbjct: 2290 tttgcctgatgattctgcacaggatgat 2317
>dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0044F08 Length = 141528 Score = 240 bits (121), Expect = 5e-60 Identities = 263/309 (85%), Gaps = 1/309 (0%) Strand = Plus / Plus Query: 12 catgaattcttcccaggagcagtatgctgtggaaaaggtctctgatgatgttgaccagcc 71 ||||||||||| || ||||||||||| ||||| ||||| | |||||||||| | | Sbjct: 73405 catgaattctttcc-ggagcagtatgtcgtggacaaggttggtaatgatgttgatgattc 73463 Query: 72 ttctgaaacaaggcgtgtgggtcttgttagaagtgttaatgcaaaggaccgaactgtgtc 131 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 73464 ttctgaaacaaaacgtgtgggtcttgttagaagtgttaatgcaaaggaccgaactgcatc 73523 Query: 132 tgtatcatggtttaggtcttcgttgcactcacaggaacctagggtaattgagtgcactga 191 |||||||||||||| | |||| || ||| || |||| || || | ||| ||||||| ||| Sbjct: 73524 tgtatcatggtttaagccttcattacacccagaggagcccagagaaatcgagtgcaatga 73583 Query: 192 agttgttagtgcatatgaacttgatggccacccggattatgattattgctatggagatgt 251 | |||| |||||||||||| | |||||||| || |||||||||||||||||||||||||| Sbjct: 73584 aattgtgagtgcatatgaattggatggccatccagattatgattattgctatggagatgt 73643 Query: 252 cgttgttcgcttgccatctgtttcacatcctatggaatcatccaatggtggaaacaccat 311 ||||||||||||||||||||||||| ||| | |||||| ||||| | | |||||||| Sbjct: 73644 tgttgttcgcttgccatctgtttcactgcctgttgaatcaaccaatagggagaacaccat 73703 Query: 312 ggagctgga 320 ||| ||||| Sbjct: 73704 ggaactgga 73712 Score = 109 bits (55), Expect = 1e-20 Identities = 114/134 (85%) Strand = Plus / Plus Query: 506 aggttgggcctcatgagatatatgttgttggccgagaagatgatggtggctcgctagatg 565 ||||||| || ||||| |||||||||||||| || ||||||||||||| ||| ||||||| Sbjct: 73957 aggttggtccacatgaaatatatgttgttggtcgtgaagatgatggtgcctcactagatg 74016 Query: 566 atggagctccttctgatgctggtagctgggagacagntgatgacaatgaaatggacttgc 625 ||||| || | ||||| || |||||||||||| | |||||||||| ||| ||| |||| Sbjct: 74017 atggaactgccagtgatggtgctagctgggagactgttgatgacaatcaaacggatttgc 74076 Query: 626 ctgatgatcctgca 639 |||||||| ||||| Sbjct: 74077 ctgatgattctgca 74090 Score = 65.9 bits (33), Expect = 2e-07 Identities = 105/129 (81%) Strand = Plus / Plus Query: 381 tgcagaggaacagctttcacagaaggaatctagttcagaagttacccacctctcatgggt 440 ||||||||||||| || ||||||||||||| |||| ||| |||| ||| ||||||| Sbjct: 73755 tgcagaggaacagtttccacagaaggaatccagtttggaatttactagcctttcatgggc 73814 Query: 441 tggaaatatagtgggcttccaagatggtgagattgaagtcacttggggtgatgggtcggt 500 ||| |||||||| || || |||| ||||| ||| ||||| |||||| ||||| || || Sbjct: 73815 tggtaatatagttggttttgaagacggtgatattatagtcatttggggcgatggttcagt 73874 Query: 501 gtcaaaggt 509 ||||||||| Sbjct: 73875 gtcaaaggt 73883
>gb|AC123923.2| Mus musculus BAC clone RP24-228I17 from chromosome 1, complete sequence Length = 163182 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 392 agctttcacagaaggaatctag 413 |||||||||||||||||||||| Sbjct: 54741 agctttcacagaaggaatctag 54762
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome Length = 2839318 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 552 tggctcgctagatgatggagctcct 576 ||||||||||| ||||||||||||| Sbjct: 74467 tggctcgctagctgatggagctcct 74491
>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome Length = 1197687 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 agtgcactgaagttgttagtg 202 ||||||||||||||||||||| Sbjct: 758381 agtgcactgaagttgttagtg 758361
>gb|M36878.1|STRIF2BA S.faecium translational initiation factor IF2 (infB) gene Length = 2798 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 333 ttctgcagaagcatcggctgcttca 357 |||||||||||||| |||||||||| Sbjct: 2163 ttctgcagaagcattggctgcttca 2187
>ref|NM_127245.2| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like activating enzyme AT2G16920 mRNA, complete cds Length = 3665 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 ctctcatgggttggaaatat 449 |||||||||||||||||||| Sbjct: 1884 ctctcatgggttggaaatat 1903
>gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosome 1, complete sequence Length = 183428 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 ctttcacagaaggaatctag 413 |||||||||||||||||||| Sbjct: 167903 ctttcacagaaggaatctag 167922
>emb|AL161916.8| Human DNA sequence from clone RP4-636O23 on chromosome 1p31.3-32.2 Contains the 3' end of gene MGC35130, complete sequence Length = 99249 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 gaacagctttcacagaagga 407 |||||||||||||||||||| Sbjct: 82253 gaacagctttcacagaagga 82234
>gb|AC100400.10| Mus musculus chromosome 15, clone RP23-134E16, complete sequence Length = 211743 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gaaaaggtctctgatgatgt 62 |||||||||||||||||||| Sbjct: 6823 gaaaaggtctctgatgatgt 6842
>emb|AL732595.13| Mouse DNA sequence from clone RP23-87I3 on chromosome 11 Contains a novel pseudogene, a RNA binding motif protein (Rbm8) pseudogene, the 5' end of the Acyp2 gene for muscle type acylphosphatase 2 and a CpG island, complete sequence Length = 115716 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 ggagctggacaagaatgttg 331 |||||||||||||||||||| Sbjct: 38522 ggagctggacaagaatgttg 38541
>gb|AC114321.2| Homo sapiens chromosome 5 clone RP11-710L15, complete sequence Length = 158109 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 622 ttgcctgatgatcctgcaaa 641 |||||||||||||||||||| Sbjct: 134792 ttgcctgatgatcctgcaaa 134811
>gb|AC005167.3| Arabidopsis thaliana chromosome 2 clone F12A24 map mi398, complete sequence Length = 93861 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 ctctcatgggttggaaatat 449 |||||||||||||||||||| Sbjct: 44175 ctctcatgggttggaaatat 44156
>gb|AC108062.3| Homo sapiens BAC clone RP11-420A23 from 4, complete sequence Length = 169597 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 ggaaacaccatggagctgga 320 |||||||||||||||||||| Sbjct: 36646 ggaaacaccatggagctgga 36627
>dbj|AK136774.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330010A05 product:unclassifiable, full insert sequence Length = 2630 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tttcacagaaggaatctagt 414 |||||||||||||||||||| Sbjct: 966 tttcacagaaggaatctagt 947
>gb|AC008499.8| Homo sapiens chromosome 5 clone CTC-438O3, complete sequence Length = 244525 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 622 ttgcctgatgatcctgcaaa 641 |||||||||||||||||||| Sbjct: 32431 ttgcctgatgatcctgcaaa 32450
>gb|AC124825.8| Mus musculus chromosome 5, clone RP24-248M2, complete sequence Length = 188127 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tttcacagaaggaatctagt 414 |||||||||||||||||||| Sbjct: 11050 tttcacagaaggaatctagt 11031
>gb|BC084614.1| Xenopus laevis hypothetical LOC495282, mRNA (cDNA clone IMAGE:5515481), partial cds Length = 3552 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 ctgcagaggaacagctttca 399 |||||||||||||||||||| Sbjct: 1671 ctgcagaggaacagctttca 1652
>gb|AC114622.12| Mus musculus chromosome 5, clone RP24-103L18, complete sequence Length = 162467 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 tttcacagaaggaatctagt 414 |||||||||||||||||||| Sbjct: 7135 tttcacagaaggaatctagt 7154
>emb|BX908759.27| Zebrafish DNA sequence from clone DKEY-27J5 in linkage group 1, complete sequence Length = 231898 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 627 tgatgatcctgcaaatgatgatcc 650 ||||||||||||||||| |||||| Sbjct: 66978 tgatgatcctgcaaatggtgatcc 66955
>gb|AC168312.8| Mus musculus chromosome 15, clone RP24-288F21, complete sequence Length = 167239 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gaaaaggtctctgatgatgt 62 |||||||||||||||||||| Sbjct: 142189 gaaaaggtctctgatgatgt 142208 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,746,489 Number of Sequences: 3902068 Number of extensions: 5746489 Number of successful extensions: 101015 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100923 Number of HSP's gapped (non-prelim): 87 length of query: 650 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 627 effective length of database: 17,143,297,704 effective search space: 10748847660408 effective search space used: 10748847660408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
