ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags36p12 |
|---|---|
| Clone Library Name | barley_pub |
>ECPA_STAES (P0C0Q0) Extracellular cysteine protease precursor (EC 3.4.22.-)| (Staphopain) Length = 395 Score = 34.3 bits (77), Expect = 0.24 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%) Frame = +3 Query: 276 GNPHQFYLDSGMRVGNFIYWPYRNRS----YVVVLDPDPNNPRLFVEMIPPLLNLNGFRS 443 G P + Y + GN+ Y+P N+ YVV + P+P+N + + +N++ F S Sbjct: 86 GEPFKIYKFNKESDGNY-YYPVLNKKGDVVYVVTISPNPSNSKASKQQNNYSINVSPFLS 144 Query: 444 SVLGQINGGNMCIAYSNGFNIGFMLRQEDG 533 +L Q + I + G+ EDG Sbjct: 145 KILNQYKNQKITILTNTK---GYFALTEDG 171
>ECPA_STAEQ (Q5HKF6) Extracellular cysteine protease precursor (EC 3.4.22.-)| (Staphopain) Length = 395 Score = 34.3 bits (77), Expect = 0.24 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%) Frame = +3 Query: 276 GNPHQFYLDSGMRVGNFIYWPYRNRS----YVVVLDPDPNNPRLFVEMIPPLLNLNGFRS 443 G P + Y + GN+ Y+P N+ YVV + P+P+N + + +N++ F S Sbjct: 86 GEPFKIYKFNKESDGNY-YYPVLNKKGDVVYVVTISPNPSNSKASKQQNNYSINVSPFLS 144 Query: 444 SVLGQINGGNMCIAYSNGFNIGFMLRQEDG 533 +L Q + I + G+ EDG Sbjct: 145 KILNQYKNQKITILTNTK---GYFALTEDG 171
>CATA3_MAIZE (P18123) Catalase isozyme 3 (EC 1.11.1.6)| Length = 496 Score = 31.2 bits (69), Expect = 2.1 Identities = 32/131 (24%), Positives = 48/131 (36%), Gaps = 4/131 (3%) Frame = +3 Query: 12 LNPLARRCERIFDLRDTHIFDDENYLEGDPGLAYGGLICDDENPTSFRIFCLASHGEFRL 191 L P+ R + D + F++ L PGL G+ D+ R+F A +RL Sbjct: 303 LRPVGRL---VLDRNVDNFFNENEQLAFGPGLVVPGIYYSDDKMLQCRVFAYADTQRYRL 359 Query: 192 RAAVFFSFLGMGGDWFLSPWLDVPHHPHGNPHQFYLDSGM----RVGNFIYWPYRNRSYV 359 G ++ + P ++ P H N H D M R Y+P R+ Sbjct: 360 -----------GPNYLMLP-VNAPRCAHHNNH---YDGAMNFMHRDEEVDYYPSRHAPLR 404 Query: 360 VVLDPDPNNPR 392 P P PR Sbjct: 405 QAAPPTPLPPR 415
>YCBJ_BACSU (P42242) Hypothetical protein ycbJ| Length = 306 Score = 30.4 bits (67), Expect = 3.5 Identities = 11/36 (30%), Positives = 26/36 (72%) Frame = -2 Query: 155 AKARGVFVIADQATVSESWIAFEVIFVVEDVGVPQI 48 A+++G+ V ++ A ++E+ + F+V+F +D G+P + Sbjct: 17 ARSQGLTVHSENAQLNETGMDFQVVFAKDDTGMPWV 52
>UTP20_HUMAN (O75691) Small subunit processome component 20 homolog| (Down-regulated in metastasis protein) (Protein Key-1A6) (Novel nucleolar protein 73) (NNP73) Length = 2785 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -2 Query: 242 EEPIAAHSQEREEDRSPQPELSMGSKTEDAKAR 144 EEP A +E EE+ PQ E S KT A A+ Sbjct: 881 EEPAAGDDEELEEEAVPQDESSQKKKTRRAAAK 913
>SYC_SCHPO (Q09860) Probable cysteinyl-tRNA synthetase (EC 6.1.1.16)| (Cysteine--tRNA ligase) (CysRS) Length = 754 Score = 30.0 bits (66), Expect = 4.6 Identities = 19/63 (30%), Positives = 34/63 (53%) Frame = -2 Query: 242 EEPIAAHSQEREEDRSPQPELSMGSKTEDAKARGVFVIADQATVSESWIAFEVIFVVEDV 63 EE IAA Q+ EE+R+ Q + + +K E K + V+ + + SE + F+ ++ Sbjct: 649 EELIAAREQKLEEERAKQAKKAQ-AKAEQEKKQVERVMKGKTSPSEMFKMFKEYLSFDEA 707 Query: 62 GVP 54 G+P Sbjct: 708 GLP 710
>CSD_BACHD (Q9K7A0) Probable cysteine desulfurase (EC 2.8.1.7)| Length = 406 Score = 30.0 bits (66), Expect = 4.6 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Frame = -2 Query: 485 SNAHVTAINLAKDRAAKTIQIQERWDHLNKQSRVVWVGVQDNHIRTI-PVRPVDEITHSH 309 + A +T + L KD TI+I++ +++++++V + N + TI PV+ + EI H H Sbjct: 135 TGATLTYLPLQKDG---TIKIEDVEKTISEKTKIVAIMHVSNVLGTINPVKEIAEIAHRH 191 Query: 308 AAI 300 AI Sbjct: 192 GAI 194
>RL1_STRR6 (P66096) 50S ribosomal protein L1| Length = 229 Score = 29.6 bits (65), Expect = 6.0 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = -2 Query: 173 GSKTEDAKARGVFVIADQ---ATVSESWIAFEVIFVVEDV 63 G+K E+AKA G + + A +++ W+ F+V+ D+ Sbjct: 81 GAKAEEAKAAGADFVGEDDLVAKINDGWLDFDVVIATPDM 120
>RL1_STRPN (P66095) 50S ribosomal protein L1| Length = 229 Score = 29.6 bits (65), Expect = 6.0 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = -2 Query: 173 GSKTEDAKARGVFVIADQ---ATVSESWIAFEVIFVVEDV 63 G+K E+AKA G + + A +++ W+ F+V+ D+ Sbjct: 81 GAKAEEAKAAGADFVGEDDLVAKINDGWLDFDVVIATPDM 120
>TRBP2_HUMAN (Q15633) TAR RNA-binding protein 2 (Trans-activation-responsive| RNA-binding protein) Length = 366 Score = 29.6 bits (65), Expect = 6.0 Identities = 17/58 (29%), Positives = 26/58 (44%) Frame = -1 Query: 453 QGPSCENHSDSGEVGSSQQTIAGCLGRGPRQPHTNDSGKASR*NYPLACRYQGKIDAG 280 Q P S+ VG+ Q+ + R P T +SG A R + + CR + I+ G Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIG 205
>NDUB3_MOUSE (Q9CQZ6) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit| 3 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase B12 subunit) (Complex I-B12) (CI-B12) Length = 104 Score = 29.6 bits (65), Expect = 6.0 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = -3 Query: 235 QSPPIPKNEKKTAARNLNSPWEARQKMRKLVGFSSS 128 + P+ +KK AAR L PW + R + GF+ + Sbjct: 31 EGTPLETVQKKLAARGLRDPWARNEAWRYMGGFAGN 66
>ASXL1_MOUSE (P59598) Putative Polycomb group protein ASXL1 (Additional sex| combs-like protein 1) Length = 1514 Score = 29.3 bits (64), Expect = 7.9 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 10/108 (9%) Frame = -3 Query: 415 GGIISTNNRG-----LFGSGSKTTTYERFR*GQ*MKLPTRMPLSR*N*CGLPW-----GW 266 G + NN G LFG G+ TT + R + LP +P + P G Sbjct: 1261 GTLSDQNNAGGHEKKLFGPGNTVTTLQCPRSEEQTPLPAEVPPVFPSRKIEPSKNSVSGG 1320 Query: 265 CGTSNHGERNQSPPIPKNEKKTAARNLNSPWEARQKMRKLVGFSSSQI 122 T+ + PP+ + KT L P +A + RK G+SS ++ Sbjct: 1321 VQTTRENRMPKPPPVSADSIKTEQTFLRDPIKADAENRKAAGYSSLEL 1368
>MRIP_MOUSE (P97434) Myosin phosphatase Rho-interacting protein| (Rho-interacting protein 3) (p116Rip) (RIP3) Length = 1024 Score = 29.3 bits (64), Expect = 7.9 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 12/65 (18%) Frame = +3 Query: 30 RCERIFDLRDTHIFDDENYLEGDPGLAYGGLI------CDDENPT------SFRIFCLAS 173 +C+ F R++H+ +DE+ + P YGG + D +NP R F L Sbjct: 21 KCQNCFKPRESHLLNDEDLTQAKP--IYGGWLLLAPDGTDFDNPVHRSRKWQRRFFILYE 78 Query: 174 HGEFR 188 HG R Sbjct: 79 HGLLR 83
>MRIP_HUMAN (Q6WCQ1) Myosin phosphatase Rho-interacting protein| (Rho-interacting protein 3) (M-RIP) (RIP3) (p116Rip) Length = 1024 Score = 29.3 bits (64), Expect = 7.9 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 12/65 (18%) Frame = +3 Query: 30 RCERIFDLRDTHIFDDENYLEGDPGLAYGGLI------CDDENPT------SFRIFCLAS 173 +C+ F R++H+ +DE+ + P YGG + D +NP R F L Sbjct: 21 KCQNCFKPRESHLLNDEDLTQAKP--IYGGWLLLAPDGTDFDNPVHRSRKWQRRFFILYE 78 Query: 174 HGEFR 188 HG R Sbjct: 79 HGLLR 83
>CP4AB_HUMAN (Q02928) Cytochrome P450 4A11 precursor (EC 1.14.15.3) (CYPIVA11)| (Fatty acid omega-hydroxylase) (P-450 HK omega) (Lauric acid omega-hydroxylase) (CYP4AII) (P450-HL-omega) Length = 519 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = -3 Query: 466 PLIWPRTELRKPFRFRRGGIISTNNRGLFGSGSKTTTYERFR*GQ*MKLPTRMPLSR 296 P +WP E+ PFRF G ++ F GS+ ++F + +K+ T + L R Sbjct: 422 PKVWPNPEVFDPFRFAPGSAQHSHAFLPFSGGSRNCIGKQFAMNE-LKVATALTLLR 477
>TRBP2_MOUSE (P97473) TAR RNA-binding protein 2 (Protamine-1 RNA-binding| protein) (PRM-1 RNA-binding protein) Length = 365 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/58 (29%), Positives = 26/58 (44%) Frame = -1 Query: 453 QGPSCENHSDSGEVGSSQQTIAGCLGRGPRQPHTNDSGKASR*NYPLACRYQGKIDAG 280 Q P S+ VG+ Q+ + R P T +SG A R + + CR + I+ G Sbjct: 147 QPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVERFIEIG 204
>VE2_HPV17 (P36785) Regulatory protein E2| Length = 452 Score = 29.3 bits (64), Expect = 7.9 Identities = 20/80 (25%), Positives = 35/80 (43%) Frame = -2 Query: 431 IQIQERWDHLNKQSRVVWVGVQDNHIRTIPVRPVDEITHSHAAIKVKLMRVTMGMVRDIQ 252 I+ Q + L +Q +V++ + N + + +PV + S A K + V + Sbjct: 26 IETQIKHWQLLRQEQVLFYYARKNGVMRVGYQPVPPLATSEAKAKDAIGMVLLLQSLQKS 85 Query: 251 PWGEEPIAAHSQEREEDRSP 192 P+G+EP E RSP Sbjct: 86 PYGKEPWTLTQTSLETVRSP 105
>MDL1_PRUSE (P52706) (R)-mandelonitrile lyase 1 precursor (EC 4.1.2.10)| (Hydroxynitrile lyase 1) ((R)-oxynitrilase 1) Length = 563 Score = 29.3 bits (64), Expect = 7.9 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 8/107 (7%) Frame = +3 Query: 99 PGLAYGGLICDDENPTSFRIFCLASHGEFRLRAAV-----FFSFLGMGGDWFLSPWLDVP 263 PGL G+I D N T R F + S GE + A G+G + +LS L++P Sbjct: 253 PGLTATGVIYRDSNGTPHRAF-VRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSS-LNIP 310 Query: 264 ---HHPHGNPHQFYLDSGMRVGNFIYWPYRNRSYVVVLDPDPNNPRL 395 HP+ VG F++ RN ++ +L P+P P + Sbjct: 311 VVLSHPY-------------VGQFLHDNPRN--FINILPPNPIEPTI 342
>MRIP_RAT (Q9ERE6) Myosin phosphatase Rho-interacting protein| (Rho-interacting protein 3) (p116Rip) (RIP3) Length = 1029 Score = 29.3 bits (64), Expect = 7.9 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 12/65 (18%) Frame = +3 Query: 30 RCERIFDLRDTHIFDDENYLEGDPGLAYGGLI------CDDENPT------SFRIFCLAS 173 +C+ F R++H+ +DE+ + P YGG + D +NP R F L Sbjct: 21 KCQNCFKPRESHLLNDEDLTQAKP--IYGGWLLLAPDGTDFDNPVHRSRKWQRRFFILYE 78 Query: 174 HGEFR 188 HG R Sbjct: 79 HGLLR 83
>NDUB3_HUMAN (O43676) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit| 3 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase B12 subunit) (Complex I-B12) (CI-B12) Length = 97 Score = 29.3 bits (64), Expect = 7.9 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = -3 Query: 235 QSPPIPKNEKKTAARNLNSPWEARQKMRKLVGFSSS 128 + P+ +KK AA+ L PW + R + GF+ S Sbjct: 24 EGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS 59 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,776,099 Number of Sequences: 219361 Number of extensions: 1947365 Number of successful extensions: 5658 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5441 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5652 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
