ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags36p12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_848457.1| PREDICTED: Canis familiaris similar to sushi do... 42 1.9
2gb|DQ465377.1| Oreochromis mossambicus smoothelin-like mRNA, par... 42 1.9
3gb|AC109832.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
4ref|NM_001005784.1| Mus musculus InaD-like (Drosophila) (Inadl),... 40 7.5
5ref|NM_172696.2| Mus musculus InaD-like (Drosophila) (Inadl), tr... 40 7.5
6emb|CR751601.8| Zebrafish DNA sequence from clone CH211-162E3 in... 40 7.5
7gb|AC087560.26| Mus musculus strain C57BL/6J clone rp23-448g13 m... 40 7.5
8emb|CR378670.1| Photobacterium profundum SS9; segment 8/12 40 7.5
9gb|AC144716.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
10dbj|AK147866.1| Mus musculus melanocyte cDNA, RIKEN full-length ... 40 7.5
11dbj|AK050545.1| Mus musculus adult pancreas islet cells cDNA, RI... 40 7.5
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
13gb|BC050846.1| Mus musculus InaD-like (Drosophila), mRNA (cDNA c... 40 7.5
14gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
15emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 40 7.5
16emb|AL671229.11| Mouse DNA sequence from clone RP23-93N10 on chr... 40 7.5
17emb|AL671920.9| Mouse DNA sequence from clone RP23-445A22 on chr... 40 7.5

>ref|XM_848457.1| PREDICTED: Canis familiaris similar to sushi domain containing 4
           (LOC610891), mRNA
          Length = 1416

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 39  cgcatcttcgatctgagggac 59
           |||||||||||||||||||||
Sbjct: 273 cgcatcttcgatctgagggac 253



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>gb|DQ465377.1| Oreochromis mossambicus smoothelin-like mRNA, partial cds
          Length = 1402

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 485  ttattcaaatggattcaacat 505
            |||||||||||||||||||||
Sbjct: 1000 ttattcaaatggattcaacat 1020



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>gb|AC109832.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
            P0038B07, complete sequence
          Length = 149697

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 390  cgattgtttgttgagatgat 409
            ||||||||||||||||||||
Sbjct: 8015 cgattgtttgttgagatgat 7996



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>ref|NM_001005784.1| Mus musculus InaD-like (Drosophila) (Inadl), transcript variant 2,
           mRNA
          Length = 3335

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 86  cctcgaaggcgatccaggac 105
           ||||||||||||||||||||
Sbjct: 195 cctcgaaggcgatccaggac 176



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>ref|NM_172696.2| Mus musculus InaD-like (Drosophila) (Inadl), transcript variant 1,
           mRNA
          Length = 7305

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 86  cctcgaaggcgatccaggac 105
           ||||||||||||||||||||
Sbjct: 195 cctcgaaggcgatccaggac 176



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>emb|CR751601.8| Zebrafish DNA sequence from clone CH211-162E3 in linkage group 14,
              complete sequence
          Length = 141943

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 422    gaatctgaatggttttcgca 441
              ||||||||||||||||||||
Sbjct: 108172 gaatctgaatggttttcgca 108191



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>gb|AC087560.26| Mus musculus strain C57BL/6J clone rp23-448g13 map X, complete sequence
          Length = 203953

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 446    ggtccttggccaaattaatg 465
              ||||||||||||||||||||
Sbjct: 109237 ggtccttggccaaattaatg 109218



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>emb|CR378670.1| Photobacterium profundum SS9; segment 8/12
          Length = 348672

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    ccacgagctttcgcatcttc 161
              ||||||||||||||||||||
Sbjct: 285498 ccacgagctttcgcatcttc 285517



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>gb|AC144716.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
            OSJNBb0108D09, complete sequence
          Length = 127371

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 390  cgattgtttgttgagatgat 409
            ||||||||||||||||||||
Sbjct: 5862 cgattgtttgttgagatgat 5881



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>dbj|AK147866.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library,
           clone:G270072G07 product:channel-interacting PDZ domain
           protein, full insert sequence
          Length = 4319

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 86  cctcgaaggcgatccaggac 105
           ||||||||||||||||||||
Sbjct: 144 cctcgaaggcgatccaggac 125



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>dbj|AK050545.1| Mus musculus adult pancreas islet cells cDNA, RIKEN full-length
           enriched library, clone:C820013I09 product:hypothetical
           PDZ domain (also known as DHR or GLGF) containing
           protein, full insert sequence
          Length = 3623

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 86  cctcgaaggcgatccaggac 105
           ||||||||||||||||||||
Sbjct: 167 cctcgaaggcgatccaggac 148



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 390      cgattgtttgttgagatgat 409
                ||||||||||||||||||||
Sbjct: 23673623 cgattgtttgttgagatgat 23673604



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>gb|BC050846.1| Mus musculus InaD-like (Drosophila), mRNA (cDNA clone
           IMAGE:6335092), complete cds
          Length = 2172

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 86  cctcgaaggcgatccaggac 105
           ||||||||||||||||||||
Sbjct: 129 cctcgaaggcgatccaggac 110



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 390      cgattgtttgttgagatgat 409
                ||||||||||||||||||||
Sbjct: 23983559 cgattgtttgttgagatgat 23983540



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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     cacgagctttcgcatcttct 162
               ||||||||||||||||||||
Sbjct: 1668343 cacgagctttcgcatcttct 1668362



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>emb|AL671229.11| Mouse DNA sequence from clone RP23-93N10 on chromosome 4, complete
             sequence
          Length = 237082

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    cctcgaaggcgatccaggac 105
             ||||||||||||||||||||
Sbjct: 21438 cctcgaaggcgatccaggac 21419



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>emb|AL671920.9| Mouse DNA sequence from clone RP23-445A22 on chromosome X, complete
             sequence
          Length = 166399

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   ggtccttggccaaattaatg 465
             ||||||||||||||||||||
Sbjct: 60441 ggtccttggccaaattaatg 60422


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,629,567
Number of Sequences: 3902068
Number of extensions: 3629567
Number of successful extensions: 63942
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63864
Number of HSP's gapped (non-prelim): 78
length of query: 555
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 532
effective length of database: 17,143,297,704
effective search space: 9120234378528
effective search space used: 9120234378528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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