>Y4762_ARATH (Q8RY73) Protein At4g17620, chloroplast precursor|
          Length = 544

 Score =  186 bits (471), Expect = 6e-47
 Identities = 91/135 (67%), Positives = 107/135 (79%)
 Frame = +1

Query: 4   RFYVRVENKQXSW*YHTVEKFEKEKLLRFWIQSFLAGVSYVVVGFRNDAGVLVRTERLRT 183
           RFYV ++  +      TV++FE+EKLL+FWIQSF+AGV Y+VVGFR+D G LVRTERL T
Sbjct: 406 RFYVELKTTR-ELDDRTVDRFEREKLLKFWIQSFVAGVPYIVVGFRDDGGRLVRTERLTT 464

Query: 184 KDITQKVKAKNYWQGGVCLAFADEVLCWLYGTVKENEDYVLQFAHPFHRLELLKAQSPCP 363
           +DI  + + KNYWQGGVCLAFADEVLCWLYGTVKENEDY+LQF HPF RLELL+AQS CP
Sbjct: 465 RDIAHRARLKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFVHPFMRLELLQAQS-CP 523

Query: 364 EPITLHVEQLTGATS 408
           + IT HV  L    S
Sbjct: 524 DAITNHVHLLQNPAS 538

>DIN1_SCHPO (O13836) Dhp1-interacting protein 1|
          Length = 352

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
 Frame = +1

Query: 70  KEKLLRFWIQSFLAGVSYVVVGFRNDAGVLVRTERLRTKDITQKVK---AKNYWQGGVCL 240
           ++KLL++W QSFL G+  +++GFR+D G+L+  + L T  I + ++     N W     L
Sbjct: 254 RKKLLKYWAQSFLLGIGRIIIGFRDDNGILIEMKELFTHQIPKMLRPYFKPNDWTPNRLL 313

Query: 241 AFADEVLCWLYGTVKEN 291
              +  L W+  TVK++
Sbjct: 314 VVLEHALEWIKQTVKQH 330

>YGZ6_YEAST (P53063) Hypothetical 44.5 kDa protein in PDE1-RTF1 intergenic|
           region
          Length = 387

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 28/76 (36%), Positives = 41/76 (53%)
 Frame = +1

Query: 61  KFEKEKLLRFWIQSFLAGVSYVVVGFRNDAGVLVRTERLRTKDITQKVKAKNYWQGGVCL 240
           KFE+ KL R W+Q FL G+  ++ GF++D  VL   E   T+++   +K  N   G  CL
Sbjct: 256 KFER-KLFRTWLQCFLVGIPRIIYGFKDDHYVLKTVEEFSTEEVPVLLKNNNPQVGSACL 314

Query: 241 AFADEVLCWLYGTVKE 288
               E + W YG + E
Sbjct: 315 ----EAIKW-YGLLTE 325

>DOM3_CAEEL (Q10660) Protein dom-3|
          Length = 393

 Score = 38.1 bits (87), Expect = 0.021
 Identities = 18/78 (23%), Positives = 37/78 (47%)
 Frame = +1

Query: 64  FEKEKLLRFWIQSFLAGVSYVVVGFRNDAGVLVRTERLRTKDITQKVKAKNYWQGGVCLA 243
           ++  K  ++W+QS L  V +++VG R   G +     LRT++I Q+      W       
Sbjct: 282 YKYSKSFKWWLQSSLVNVDHIIVGLRTQEGHVKSLTSLRTREIPQRAS----WNFRAGFE 337

Query: 244 FADEVLCWLYGTVKENED 297
           F   +  ++   ++++ D
Sbjct: 338 FLSTIFTYILNCLEKDGD 355

>RRP44_HUMAN (Q9Y2L1) Exosome complex exonuclease RRP44 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 44) (DIS3 protein homolog)
          Length = 958

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
 Frame = +1

Query: 145 DAGVLVRTERLRTKDITQKVKAKNYWQGGVCLAFAD--EVLCWLYGTVKENEDYVLQFAH 318
           ++G ++ +E L    + Q +K+  Y QG    +  +  E   W++G  +EN++ +LQ   
Sbjct: 222 ESGKIIFSEHLPLSKLQQGIKSGTYLQGTFRASRENYLEATVWIHGDNEENKEIILQGLK 281

Query: 319 PFHR--------LELL-KAQSPCPEPITLHVE 387
             +R        +ELL K+Q   P  + LH E
Sbjct: 282 HLNRAVHEDIVAVELLPKSQWVAPSSVVLHDE 313

>YJX3_YEAST (P47084) Hypothetical 62.2 kDa protein in MPP10-SAG1 intergenic|
           region
          Length = 539

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 101 HSLPAYHMLSWDSGMMLVYLYELRD*ELKISHKK*KQ---RTTGRVVSAWRLRTRFYA 265
           H++   ++   D G+  ++   LRD +LK S    KQ      GRV S+W L T++ A
Sbjct: 99  HNMMIENLSDLDYGVATIHSNNLRDLDLKPSLPAIKQIIRNNPGRVQSSWELFTQYKA 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,636,017
Number of Sequences: 219361
Number of extensions: 1517554
Number of successful extensions: 3692
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3692
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)