ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags37e08 |
|---|---|
| Clone Library Name | barley_pub |
>UBP21_SCHPO (Q9UTT1) Ubiquitin carboxyl-terminal hydrolase 21 (EC 3.1.2.15)| (Ubiquitin thioesterase 21) (Ubiquitin-specific processing protease 21) (Deubiquitinating enzyme 21) Length = 1129 Score = 72.4 bits (176), Expect = 1e-12 Identities = 66/218 (30%), Positives = 110/218 (50%), Gaps = 11/218 (5%) Frame = +3 Query: 9 FCLELSKLHTYDDVVERVARQLGLDDPSKIRLTSHNCYSQQPKP---QPIRYRGVEHLLD 179 F L L+ Y D+ VA +L +D P+ ++ T + S+ P+ P ++ +++ + Sbjct: 842 FDLVLTTHTNYTDMARAVANKLNVD-PNYLQFTMAHLPSRTPRSVIRNPSKFT-LQNAIP 899 Query: 180 MLVHYNQTSDILYYEVLDIPLPELQCLKTLKVAF-----HHATKDEVVIHSIRLSKNSTI 344 +NQ +++YEVLDI L EL+ + ++V F H T+ E + K T+ Sbjct: 900 STYSHNQNV-VMFYEVLDITLSELERKQLIRVHFLSNGISHETQMEFYV-----DKEGTV 953 Query: 345 SDVITDLKTKVELSNPDA-ELRLLEVFYHKIYKIFPPHEKIENINDQYWTLRAEEIPEEE 521 D++ + KV L+ DA LRL EV+ H+I K P + I ++N ++ T E P+EE Sbjct: 954 EDILRQVTQKVPLNAEDASRLRLYEVYNHRILKSHLPTDGIYDLN-EFSTAYVEVTPKEE 1012 Query: 522 K-NLTAQDRL-IHVYHFMKDPNQNQQIQNFGDPFLLVI 629 + L D + I V HF KD ++ I PF V+ Sbjct: 1013 QMQLKTDDAVSIVVQHFFKDLSRLHDI-----PFYFVL 1045
>UBP11_MOUSE (Q99K46) Ubiquitin carboxyl-terminal hydrolase 11 (EC 3.1.2.15)| (Ubiquitin thioesterase 11) (Ubiquitin-specific-processing protease 11) (Deubiquitinating enzyme 11) (Fragment) Length = 797 Score = 32.3 bits (72), Expect = 1.2 Identities = 24/94 (25%), Positives = 44/94 (46%) Frame = +3 Query: 201 TSDILYYEVLDIPLPELQCLKTLKVAFHHATKDEVVIHSIRLSKNSTISDVITDLKTKVE 380 T D Y + +P+ + L+ V K E H + + K ISD+ L T Sbjct: 301 TFDPFCYLSVPLPVCSRRVLEVFFVPMDPRRKPEQ--HRVVVPKKGNISDLCVALSTHTS 358 Query: 381 LSNPDAELRLLEVFYHKIYKIFPPHEKIENINDQ 482 ++ PD ++ + +VF H+ YK++ + + I D+ Sbjct: 359 VA-PD-KMIVADVFSHRFYKLYQLEDPLSGILDR 390
>RF1_ENTFA (Q831F6) Peptide chain release factor 1 (RF-1)| Length = 357 Score = 31.6 bits (70), Expect = 2.0 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 5/87 (5%) Frame = +3 Query: 351 VITDLKTKVELSNPDAELR-LLEVF--YHKIYKIFPPHEKI--ENINDQYWTLRAEEIPE 515 VI+D K +ELS +A R +EV+ Y ++ + E++ EN++ + + EE+ + Sbjct: 24 VISDTKRFMELSKEEANTRETVEVYRRYKQVVEGISDAEELLSENLDAEMAEMAKEELSD 83 Query: 516 EEKNLTAQDRLIHVYHFMKDPNQNQQI 596 +K + I + KDPN ++ I Sbjct: 84 LKKEKEVLEDRIKILLLPKDPNDDKNI 110
>PUR1_STAAR (Q6GI14) Amidophosphoribosyltransferase precursor (EC 2.4.2.14)| (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) Length = 494 Score = 31.6 bits (70), Expect = 2.0 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +3 Query: 156 RGVEHLLDMLVHYNQTSDILYYEVLDIPLPEL-QCLKTLKVAFHHATKDEVVIHSIRLSK 332 +G+E++ +L H+ S + + I L Q L+ FH ++ EV++H IR SK Sbjct: 90 KGIENIQPLLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSK 149 Query: 333 NSTISDVITDLKTKVE 380 T + + + K++ Sbjct: 150 APTFEEALKESLRKIK 165
>UBP11_HUMAN (P51784) Ubiquitin carboxyl-terminal hydrolase 11 (EC 3.1.2.15)| (Ubiquitin thioesterase 11) (Ubiquitin-specific-processing protease 11) (Deubiquitinating enzyme 11) Length = 920 Score = 31.2 bits (69), Expect = 2.6 Identities = 22/94 (23%), Positives = 41/94 (43%) Frame = +3 Query: 201 TSDILYYEVLDIPLPELQCLKTLKVAFHHATKDEVVIHSIRLSKNSTISDVITDLKTKVE 380 T D Y + +P+ + L+ + K E H + + K ISD+ L Sbjct: 434 TFDPFCYLSVPLPISHKRVLEVFFIPMDPRRKPEQ--HRLVVPKKGKISDLCVALSKHTG 491 Query: 381 LSNPDAELRLLEVFYHKIYKIFPPHEKIENINDQ 482 +S + + +VF H+ YK++ E + +I D+ Sbjct: 492 IS--PERMMVADVFSHRFYKLYQLEEPLSSILDR 523
>PRP28_DEBHA (Q6BLU9) Pre-mRNA splicing ATP-dependent RNA helicase PRP28 (EC| 3.6.1.-) Length = 580 Score = 31.2 bits (69), Expect = 2.6 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +3 Query: 456 EKIENINDQYWTLRAEEIPEEEKNLTAQDRLIHVYHFMKDPNQNQQIQNFGD 611 E ++NIN Q+ A + +E + D+L + F KD N+N I F + Sbjct: 393 EAVDNINQQFEYFGARQSSDEILDPKKLDKLFSILRFHKDENRNYSIIIFAN 444
>PUR1_STAAW (Q8NX91) Amidophosphoribosyltransferase precursor (EC 2.4.2.14)| (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) Length = 494 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +3 Query: 156 RGVEHLLDMLVHYNQTSDILYYEVLDIPLPEL-QCLKTLKVAFHHATKDEVVIHSIRLSK 332 +G+E++ L H+ S + + I L Q L+ FH ++ EV++H IR SK Sbjct: 90 KGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSK 149 Query: 333 NSTISDVITDLKTKVE 380 T + + + KV+ Sbjct: 150 APTFEEALKESLRKVK 165
>PUR1_STAAS (Q6GAE3) Amidophosphoribosyltransferase precursor (EC 2.4.2.14)| (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) Length = 494 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +3 Query: 156 RGVEHLLDMLVHYNQTSDILYYEVLDIPLPEL-QCLKTLKVAFHHATKDEVVIHSIRLSK 332 +G+E++ L H+ S + + I L Q L+ FH ++ EV++H IR SK Sbjct: 90 KGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSK 149 Query: 333 NSTISDVITDLKTKVE 380 T + + + KV+ Sbjct: 150 APTFEEALKESLRKVK 165
>PUR1_STAAN (P99164) Amidophosphoribosyltransferase precursor (EC 2.4.2.14)| (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) Length = 494 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +3 Query: 156 RGVEHLLDMLVHYNQTSDILYYEVLDIPLPEL-QCLKTLKVAFHHATKDEVVIHSIRLSK 332 +G+E++ L H+ S + + I L Q L+ FH ++ EV++H IR SK Sbjct: 90 KGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSK 149 Query: 333 NSTISDVITDLKTKVE 380 T + + + KV+ Sbjct: 150 APTFEEALKESLRKVK 165
>PUR1_STAAM (P65831) Amidophosphoribosyltransferase precursor (EC 2.4.2.14)| (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) Length = 494 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +3 Query: 156 RGVEHLLDMLVHYNQTSDILYYEVLDIPLPEL-QCLKTLKVAFHHATKDEVVIHSIRLSK 332 +G+E++ L H+ S + + I L Q L+ FH ++ EV++H IR SK Sbjct: 90 KGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSK 149 Query: 333 NSTISDVITDLKTKVE 380 T + + + KV+ Sbjct: 150 APTFEEALKESLRKVK 165
>PUR1_STAAC (Q5HH14) Amidophosphoribosyltransferase precursor (EC 2.4.2.14)| (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) Length = 494 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +3 Query: 156 RGVEHLLDMLVHYNQTSDILYYEVLDIPLPEL-QCLKTLKVAFHHATKDEVVIHSIRLSK 332 +G+E++ L H+ S + + I L Q L+ FH ++ EV++H IR SK Sbjct: 90 KGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSK 149 Query: 333 NSTISDVITDLKTKVE 380 T + + + KV+ Sbjct: 150 APTFEEALKESLRKVK 165
>THRC_ASHGO (Q00063) Threonine synthase (EC 4.2.3.1) (TS)| Length = 512 Score = 30.8 bits (68), Expect = 3.5 Identities = 20/66 (30%), Positives = 32/66 (48%) Frame = +3 Query: 381 LSNPDAELRLLEVFYHKIYKIFPPHEKIENINDQYWTLRAEEIPEEEKNLTAQDRLIHVY 560 LS D + +++ FY ++I P E E I Y + R+EE+ KN+T D +H+ Sbjct: 53 LSFQDLAMEIMK-FYIADWEI-PAPELRELIERSYSSFRSEEVTPLRKNVTGDDENLHIL 110 Query: 561 HFMKDP 578 P Sbjct: 111 ELFHGP 116
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)| Length = 1770 Score = 30.8 bits (68), Expect = 3.5 Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 20/160 (12%) Frame = +3 Query: 144 PIRYRGVEHLLDMLVHYNQTSDILYYEVLD-IPLPELQCLKTLKVAFHHATKDEVVIHSI 320 P YR +H ++ + ++ +LD +PLP+L + +KD IHS Sbjct: 1115 PPEYRSSDHATPNIMPDKSSKNVTADSILDDLPLPDLTHQSPTDTS--DVSKDIPHIHSR 1172 Query: 321 RLSKNSTI-----SDVITDLKTKVE-LSNPDAELRLLEVFYHK--IYKIFPPHEK----- 461 + NS++ S+V+T K+K L + + E+ + ++ + + PP K Sbjct: 1173 QT--NSSLGGMDDSNVLTTTKSKKRSLEDNETEIEVSRDTWNNKNMRSLEPPRSKKRINL 1230 Query: 462 ------IENINDQYWTLRAEEIPEEEKNLTAQDRLIHVYH 563 +++I TLR +E K+ +DR + YH Sbjct: 1231 IAAIKGVKSIKPVRTTLRYDEAITYNKDNKEKDRYVEAYH 1270
>PSTB3_STRA5 (P63372) Phosphate import ATP-binding protein pstB 3 (EC 3.6.3.27)| (Phosphate-transporting ATPase 3) (ABC phosphate transporter 3) Length = 253 Score = 30.8 bits (68), Expect = 3.5 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 6/149 (4%) Frame = +3 Query: 42 DDVVERVARQLGLDDPSKIRLTSH---NCYSQQPKPQPIRYRGVEHLLDMLVHYNQTSDI 212 DD+VER +Q L D K RL QQ + R +E D+ Sbjct: 123 DDIVERSLKQAALWDEVKDRLHKSALGMSGGQQQRLCIARALAIE------------PDV 170 Query: 213 LYYEVLDIPLPELQCLKTLKVAFHHATKDEVVIHSIRLSKNSTISDVITDLKTKVELSNP 392 L ++D P L + T K+ +E+V I+L KN TI V +++ V +S+ Sbjct: 171 L---LMDEPTSALDPISTAKI-------EELV---IQLKKNYTIVIVTHNMQQAVRISDK 217 Query: 393 DAELRLLEVF-YHKIYKIF--PPHEKIEN 470 A + EV Y+K ++F P E+ EN Sbjct: 218 TAFFLMGEVVEYNKTSQLFSLPQDERTEN 246
>PSTB3_STRA3 (P63371) Phosphate import ATP-binding protein pstB 3 (EC 3.6.3.27)| (Phosphate-transporting ATPase 3) (ABC phosphate transporter 3) Length = 253 Score = 30.8 bits (68), Expect = 3.5 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 6/149 (4%) Frame = +3 Query: 42 DDVVERVARQLGLDDPSKIRLTSH---NCYSQQPKPQPIRYRGVEHLLDMLVHYNQTSDI 212 DD+VER +Q L D K RL QQ + R +E D+ Sbjct: 123 DDIVERSLKQAALWDEVKDRLHKSALGMSGGQQQRLCIARALAIE------------PDV 170 Query: 213 LYYEVLDIPLPELQCLKTLKVAFHHATKDEVVIHSIRLSKNSTISDVITDLKTKVELSNP 392 L ++D P L + T K+ +E+V I+L KN TI V +++ V +S+ Sbjct: 171 L---LMDEPTSALDPISTAKI-------EELV---IQLKKNYTIVIVTHNMQQAVRISDK 217 Query: 393 DAELRLLEVF-YHKIYKIF--PPHEKIEN 470 A + EV Y+K ++F P E+ EN Sbjct: 218 TAFFLMGEVVEYNKTSQLFSLPQDERTEN 246
>Y948_METJA (Q58358) Hypothetical protein MJ0948| Length = 191 Score = 30.4 bits (67), Expect = 4.5 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 11/114 (9%) Frame = +3 Query: 309 IHSIRLSKNSTISDVITDLKTKVELSNPDAELRLLEVFYHKIYKIFPPHEKI--ENINDQ 482 +++IR+ N + DL T +L ++ L + KI E I NI + Sbjct: 34 LNNIRVKLNELRTSNPDDLDTIAQLEEEESHLTSEVLKLDLSIKILEVVEYIIESNIFED 93 Query: 483 YWTLRAEEIPEE-------EKNLTAQDRLIHVYHF--MKDPNQNQQIQNFGDPF 617 YW + E+IP E E L+ + + +Y + D N ++IQN D + Sbjct: 94 YWKIIEEKIPYEELLNIVVENGLSIKKTCMELYKLANIDDKNILKKIQNLPDDY 147
>TYRR_ENTAG (Q9ZIB7) Transcriptional regulatory protein tyrR| Length = 521 Score = 29.6 bits (65), Expect = 7.7 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Frame = +3 Query: 360 DLKTKVELSNPDAELRLLEVFYHKIYKIFPPHEKIENINDQYWTLRAEEIPEEEKNLTAQ 539 DL+TKVEL+NP A+ L + +KI + F I N W L +E + + +++ + Sbjct: 97 DLRTKVELANPAAQ-NLFNLDENKI-RNFTADHLINGFNFARW-LESERVQAQAQHVVIE 153 Query: 540 DR----LIHVYHFMKDPNQNQQI 596 R H + +D +Q Q+ Sbjct: 154 GRDFLMEAHPIYLSEDNDQADQL 176
>DHE3_THELI (Q56304) Glutamate dehydrogenase (EC 1.4.1.3) (GDH)| Length = 418 Score = 29.6 bits (65), Expect = 7.7 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 19/120 (15%) Frame = +3 Query: 291 TKDEVVIHSIRLSKNSTISDVIT-----DLKTKV--ELSNPDAELRLLEVFYHKIYKIFP 449 T +E++ + + S I +VIT ++K K+ EL+N E+ Y K I P Sbjct: 279 TNEELLELEVDVLAPSAIEEVITKKNADNIKAKIVAELANGPTTPEADEILYEKGILIIP 338 Query: 450 PH------------EKIENINDQYWTLRAEEIPEEEKNLTAQDRLIHVYHFMKDPNQNQQ 593 E ++NI YWT+ ++K A VY+ K+ N N + Sbjct: 339 DFLCNAGGVTVSYFEWVQNITGDYWTVEETRAKLDKKMTKA---FWDVYNTHKEKNINMR 395
>ATM_ARATH (Q9M3G7) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Ataxia| telangiectasia mutated homolog) (AtATM) Length = 3856 Score = 29.6 bits (65), Expect = 7.7 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +1 Query: 4 KNFVWNCRSFILMMMLLRELHANLDWM 84 K F+ C ++L +LL E H NLDW+ Sbjct: 2007 KYFIHFCSHWLLPALLLHEDHTNLDWV 2033 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,485,279 Number of Sequences: 219361 Number of extensions: 1597248 Number of successful extensions: 4720 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4612 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4717 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
