ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags37e08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ119301.1| Oryza sativa (indica cultivar-group) putative ubiquitin protease mRNA, partial cds Length = 1593 Score = 807 bits (407), Expect = 0.0 Identities = 569/623 (91%) Strand = Plus / Plus Query: 9 ttttgtttggaattgtcgaagcttcatacttatgatgatgttgttgagagagttgcacgc 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 ttttgtttggaattgtcgaagcttcatacttatgatgatgttgttgagagagttgcacgc 210 Query: 69 caacttggattggatgatccatcaaaaattcggcttacgtctcacaattgctattctcag 128 |||||||| ||||||||||||||||||||||| ||||| |||||||| || ||||| ||| Sbjct: 211 caacttggcttggatgatccatcaaaaattcgccttacatctcacaactgttattcccag 270 Query: 129 caacctaaaccacagcccatcagatatcgtggagtagagcatctattggatatgcttgtc 188 ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| Sbjct: 271 caacctaaaccacagcctatcagatatcgtggtgtagagcacctattggatatgcttgtt 330 Query: 189 cattataatcagacttctgacatactgtattatgaagtcttggacattccactgccagaa 248 ||||| ||||||||||||||||| ||||||| || || |||||||||||||||||||| Sbjct: 331 cattacaatcagacttctgacatcttgtattacgaggttctggacattccactgccagaa 390 Query: 249 ttgcagtgtttaaaaacacttaaagttgcttttcaccatgcaacgaaagatgaggttgta 308 ||||||||||| ||||| ||||||||||| || ||||||||||| ||||||||||||||| Sbjct: 391 ttgcagtgtttgaaaactcttaaagttgcattccaccatgcaactaaagatgaggttgta 450 Query: 309 attcacagcatcaggctttcaaaaaatagcaccatcagtgatgtgatcactgacttgaag 368 || || ||||| || || | ||||| |||||||||||||||||||| |||||| | || Sbjct: 451 atccatagcataagactaccgaaaaacagcaccatcagtgatgtgattactgacctaaaa 510 Query: 369 accaaggttgaactatccaatcctgatgctgagctccgcttgcttgaagttttctaccac 428 |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct: 511 accaaggttgaactgtccaatcctgatgctgaactccgcttgcttgaagtattctatcac 570 Query: 429 aagatttataagatatttccacctcatgagaagatagagaacataaatgatcagtactgg 488 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 571 aagatttataagatatttccacctcacgagaaaatagagaacataaatgatcagtactgg 630 Query: 489 acactacgtgctgaggagattccagaggaggagaagaatctcactgcacaggatcggttg 548 |||||||||||||||||||| |||||||| |||||||| || |||| ||||||||| Sbjct: 631 acactacgtgctgaggagataccagaggaagagaagaaccttggcccacatgatcggttg 690 Query: 549 attcacgtctatcatttcatgaaagatcctaatcagaatcagcagattcagaattttgga 608 ||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 691 attcatgtttaccatttcatgaaagatcctaatcaaaatcagcagattcagaattttgga 750 Query: 609 gatccctttttgctggttatccg 631 ||||| ||||||||||||||||| Sbjct: 751 gatccatttttgctggttatccg 773
>gb|AY104649.1| Zea mays PCO133877 mRNA sequence Length = 927 Score = 700 bits (353), Expect = 0.0 Identities = 553/620 (89%) Strand = Plus / Plus Query: 9 ttttgtttggaattgtcgaagcttcatacttatgatgatgttgttgagagagttgcacgc 68 |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 239 ttttctttggaattgtcgaagcttcatacatatgatgatgttgttgagagagttgcacat 298 Query: 69 caacttggattggatgatccatcaaaaattcggcttacgtctcacaattgctattctcag 128 |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| Sbjct: 299 caacttgggttggatgatccatcaaagatacggcttacgtctcacaattgttattctcag 358 Query: 129 caacctaaaccacagcccatcagatatcgtggagtagagcatctattggatatgcttgtc 188 ||||||||||||||||| || |||||| | || |||| |||||| ||||||||||||| Sbjct: 359 caacctaaaccacagcctattagatataggggggtagcacatctactggatatgcttgtn 418 Query: 189 cattataatcagacttctgacatactgtattatgaagtcttggacattccactgccagaa 248 |||||||||||||||||||| || |||||||||| || ||||||||||||||||||| Sbjct: 419 cattataatcagacttctgatatcttgtattatgaggttctggacattccactgccagat 478 Query: 249 ttgcagtgtttaaaaacacttaaagttgcttttcaccatgcaacgaaagatgaggttgta 308 |||||| |||| ||||| ||||||||||| || ||||||||||| ||||| |||||||| Sbjct: 479 ttgcagcgtttgaaaacgcttaaagttgcattccaccatgcaacaaaagacgaggttgtc 538 Query: 309 attcacagcatcaggctttcaaaaaatagcaccatcagtgatgtgatcactgacttgaag 368 |||| ||||| || ||| ||| |||||||||||||||||||||||| ||||| ||||| Sbjct: 539 gttcatagcataagacttccaagaaatagcaccatcagtgatgtgattactgatttgaaa 598 Query: 369 accaaggttgaactatccaatcctgatgctgagctccgcttgcttgaagttttctaccac 428 ||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||| Sbjct: 599 accaaggttgaactatctaatcctgacgctgagctccgcttgcttgaagtattttaccac 658 Query: 429 aagatttataagatatttccacctcatgagaagatagagaacataaatgatcagtactgg 488 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 659 aagatttataagatctttccacctcatgagaagatagagaacataaatgatcagtactgg 718 Query: 489 acactacgtgctgaggagattccagaggaggagaagaatctcactgcacaggatcggttg 548 ||| |||| ||||||||||| |||||||| ||||||||||| | |||| ||||| ||| Sbjct: 719 acattacgagctgaggagatcccagaggaagagaagaatcttggtccacatgatcgattg 778 Query: 549 attcacgtctatcatttcatgaaagatcctaatcagaatcagcagattcagaattttgga 608 ||||| || || |||||||||||||| ||||| |||||||| || ||||| ||||| ||| Sbjct: 779 attcatgtttaccatttcatgaaagaccctaaccagaatcaacaaattcaaaatttcgga 838 Query: 609 gatccctttttgctggttat 628 ||||| |||||| ||||||| Sbjct: 839 gatccttttttgatggttat 858
>dbj|AK067123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096M22, full insert sequence Length = 3975 Score = 464 bits (234), Expect = e-127 Identities = 516/610 (84%) Strand = Plus / Plus Query: 9 ttttgtttggaattgtcgaagcttcatacttatgatgatgttgttgagagagttgcacgc 68 |||| |||||||||||| || |||||||| |||||||||||||||||||||||||| || Sbjct: 2446 ttttctttggaattgtcaaaacttcatacctatgatgatgttgttgagagagttgcccgt 2505 Query: 69 caacttggattggatgatccatcaaaaattcggcttacgtctcacaattgctattctcag 128 || ||||| ||||||||||| | |||||||| || || || || || |||||||| ||| Sbjct: 2506 cagcttggtgtggatgatccagcgaaaattcgtctaacatcccataactgctattcgcag 2565 Query: 129 caacctaaaccacagcccatcagatatcgtggagtagagcatctattggatatgcttgtc 188 || |||||||| || || ||| ||||||| ||||| |||||||| ||||| ||||| | Sbjct: 2566 cagcctaaaccgcaacctatctgatatcggggagtggagcatcttttggacatgctcatt 2625 Query: 189 cattataatcagacttctgacatactgtattatgaagtcttggacattccactgccagaa 248 |||||||||||||| || |||||| |||||||||| || ||||| ||||||||||||||| Sbjct: 2626 cattataatcagacatcagacatattgtattatgaggtgttggatattccactgccagaa 2685 Query: 249 ttgcagtgtttaaaaacacttaaagttgcttttcaccatgcaacgaaagatgaggttgta 308 |||||| | | ||||| || |||||||| || |||||||| || || ||||||||||| Sbjct: 2686 ttgcagggcctgaaaaccctgaaagttgcattccaccatgctacaaaggatgaggttgtg 2745 Query: 309 attcacagcatcaggctttcaaaaaatagcaccatcagtgatgtgatcactgacttgaag 368 |||||||| ||||||||| |||| ||||||||||| || ||||| | ||| ||||| Sbjct: 2746 attcacagtatcaggcttccaaagaatagcaccattgcagacgtgattaatgatttgaaa 2805 Query: 369 accaaggttgaactatccaatcctgatgctgagctccgcttgcttgaagttttctaccac 428 || |||||||||||||||| ||| |||||| | |||||| | || || || |||||| Sbjct: 2806 acaaaggttgaactatccagtcccagtgctgaattgcgcttgttagaggtcttttaccac 2865 Query: 429 aagatttataagatatttccacctcatgagaagatagagaacataaatgatcagtactgg 488 ||||| |||||||| ||||||| ||||||||||||||||| || ||||||||||||||| Sbjct: 2866 aagatatataagatttttccactccatgagaagatagagaatattaatgatcagtactgg 2925 Query: 489 acactacgtgctgaggagattccagaggaggagaagaatctcactgcacaggatcggttg 548 ||||||||||||||||||||||||||||||||||| |||||| | || | |||||||| Sbjct: 2926 acactacgtgctgaggagattccagaggaggagaaaaatctcggtccaaatgatcggtta 2985 Query: 549 attcacgtctatcatttcatgaaagatcctaatcagaatcagcagattcagaattttgga 608 ||||| || ||||| ||||||||||| ||| ||||||||||||||||||||| |||||| Sbjct: 2986 attcatgtttatcacttcatgaaagaccctcttcagaatcagcagattcagaactttgga 3045 Query: 609 gatccctttt 618 ||||| |||| Sbjct: 3046 gatccttttt 3055
>gb|BT016292.1| Zea mays clone Contig125 mRNA sequence Length = 1106 Score = 355 bits (179), Expect = 1e-94 Identities = 296/335 (88%) Strand = Plus / Plus Query: 294 aaagatgaggttgtaattcacagcatcaggctttcaaaaaatagcaccatcagtgatgtg 353 ||||| |||||||| |||| ||||| || ||| ||| |||||||||||||||||||||| Sbjct: 10 aaagacgaggttgttgttcatagcataagacttccaagaaatagcaccatcagtgatgtg 69 Query: 354 atcactgacttgaagaccaaggttgaactatccaatcctgatgctgagctccgcttgctt 413 || ||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 70 attactgatttgaaaaccaaggttgaactatctaatcctgacgctgagctccgcttgctt 129 Query: 414 gaagttttctaccacaagatttataagatatttccacctcatgagaagatagagaacata 473 ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 130 gaagtattttaccacaagatttataagatctttccacctcatgagaagatagagaacata 189 Query: 474 aatgatcagtactggacactacgtgctgaggagattccagaggaggagaagaatctcact 533 |||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||| Sbjct: 190 aatgatcagtactggacattacgagctgaggagatcccagaggaagagaagaatcttggc 249 Query: 534 gcacaggatcggttgattcacgtctatcatttcatgaaagatcctaatcagaatcagcag 593 |||| ||||| |||||||| || || |||||||||||||| || || |||||||| || Sbjct: 250 ccacatgatcgattgattcatgtttaccatttcatgaaagacccgaaccagaatcaacaa 309 Query: 594 attcagaattttggagatccctttttgctggttat 628 ||||| ||||| |||||||| |||||| ||||||| Sbjct: 310 attcaaaatttcggagatccttttttgatggttat 344
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 266 bits (134), Expect = 8e-68 Identities = 167/178 (93%) Strand = Plus / Plus Query: 23 gtcgaagcttcatacttatgatgatgttgttgagagagttgcacgccaacttggattgga 82 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 18385808 gtcgaagcttcatacttatgatgatgttgttgagagagttgcacgccaacttggcttgga 18385867 Query: 83 tgatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccaca 142 |||||||||||||||||| ||||| |||||||| || ||||| ||||||||||||||||| Sbjct: 18385868 tgatccatcaaaaattcgccttacatctcacaactgttattcccagcaacctaaaccaca 18385927 Query: 143 gcccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcag 200 ||| |||||||||||||| |||||||| ||||||||||||||||| ||||| |||||| Sbjct: 18385928 gcctatcagatatcgtggtgtagagcacctattggatatgcttgttcattacaatcag 18385985 Score = 127 bits (64), Expect = 5e-26 Identities = 97/108 (89%) Strand = Plus / Plus Query: 198 cagacttctgacatactgtattatgaagtcttggacattccactgccagaattgcagtgt 257 |||||||||||||| ||||||| || || ||||||||||||||||||||||||||||| Sbjct: 18386062 cagacttctgacatcttgtattacgaggttctggacattccactgccagaattgcagtgt 18386121 Query: 258 ttaaaaacacttaaagttgcttttcaccatgcaacgaaagatgaggtt 305 || ||||| ||||||||||| || ||||||||||| |||||||||||| Sbjct: 18386122 ttgaaaactcttaaagttgcattccaccatgcaactaaagatgaggtt 18386169 Score = 119 bits (60), Expect = 1e-23 Identities = 66/68 (97%) Strand = Plus / Plus Query: 439 agatatttccacctcatgagaagatagagaacataaatgatcagtactggacactacgtg 498 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 18386672 agatatttccacctcacgagaaaatagagaacataaatgatcagtactggacactacgtg 18386731 Query: 499 ctgaggag 506 |||||||| Sbjct: 18386732 ctgaggag 18386739 Score = 103 bits (52), Expect = 7e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 373 aggttgaactatccaatcctgatgctgagctccgcttgcttgaagttttctaccacaaga 432 |||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct: 18386487 aggttgaactgtccaatcctgatgctgaactccgcttgcttgaagtattctatcacaaga 18386546 Query: 433 tttataag 440 |||||||| Sbjct: 18386547 tttataag 18386554 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Plus Query: 588 cagcagattcagaattttggagatccctttttgctggttatccg 631 |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 18387077 cagcagattcagaattttggagatccatttttgctggttatccg 18387120 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 535 cacaggatcggttgattcacgtctatcatttcatgaaagatcctaatcagaatcag 590 |||| |||||||||||||| || || ||||||||||||||||||||||| |||||| Sbjct: 18386881 cacatgatcggttgattcatgtttaccatttcatgaaagatcctaatcaaaatcag 18386936 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 301 aggttgtaattcacagcatcaggctttcaaaaaatagcaccatcagtgatgtgatcactg 360 |||||||||| || ||||| || || | ||||| |||||||||||||||||||| |||| Sbjct: 18386241 aggttgtaatccatagcataagactaccgaaaaacagcaccatcagtgatgtgattactg 18386300 Query: 361 acttgaagaccaaggt 376 || | || |||||||| Sbjct: 18386301 acctaaaaaccaaggt 18386316
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 266 bits (134), Expect = 8e-68 Identities = 167/178 (93%) Strand = Plus / Plus Query: 23 gtcgaagcttcatacttatgatgatgttgttgagagagttgcacgccaacttggattgga 82 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 18312034 gtcgaagcttcatacttatgatgatgttgttgagagagttgcacgccaacttggcttgga 18312093 Query: 83 tgatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccaca 142 |||||||||||||||||| ||||| |||||||| || ||||| ||||||||||||||||| Sbjct: 18312094 tgatccatcaaaaattcgccttacatctcacaactgttattcccagcaacctaaaccaca 18312153 Query: 143 gcccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcag 200 ||| |||||||||||||| |||||||| ||||||||||||||||| ||||| |||||| Sbjct: 18312154 gcctatcagatatcgtggtgtagagcacctattggatatgcttgttcattacaatcag 18312211 Score = 127 bits (64), Expect = 5e-26 Identities = 97/108 (89%) Strand = Plus / Plus Query: 198 cagacttctgacatactgtattatgaagtcttggacattccactgccagaattgcagtgt 257 |||||||||||||| ||||||| || || ||||||||||||||||||||||||||||| Sbjct: 18312288 cagacttctgacatcttgtattacgaggttctggacattccactgccagaattgcagtgt 18312347 Query: 258 ttaaaaacacttaaagttgcttttcaccatgcaacgaaagatgaggtt 305 || ||||| ||||||||||| || ||||||||||| |||||||||||| Sbjct: 18312348 ttgaaaactcttaaagttgcattccaccatgcaactaaagatgaggtt 18312395 Score = 119 bits (60), Expect = 1e-23 Identities = 66/68 (97%) Strand = Plus / Plus Query: 439 agatatttccacctcatgagaagatagagaacataaatgatcagtactggacactacgtg 498 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 18312898 agatatttccacctcacgagaaaatagagaacataaatgatcagtactggacactacgtg 18312957 Query: 499 ctgaggag 506 |||||||| Sbjct: 18312958 ctgaggag 18312965 Score = 103 bits (52), Expect = 7e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 373 aggttgaactatccaatcctgatgctgagctccgcttgcttgaagttttctaccacaaga 432 |||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct: 18312713 aggttgaactgtccaatcctgatgctgaactccgcttgcttgaagtattctatcacaaga 18312772 Query: 433 tttataag 440 |||||||| Sbjct: 18312773 tttataag 18312780 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Plus Query: 588 cagcagattcagaattttggagatccctttttgctggttatccg 631 |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 18313303 cagcagattcagaattttggagatccatttttgctggttatccg 18313346 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 535 cacaggatcggttgattcacgtctatcatttcatgaaagatcctaatcagaatcag 590 |||| |||||||||||||| || || ||||||||||||||||||||||| |||||| Sbjct: 18313107 cacatgatcggttgattcatgtttaccatttcatgaaagatcctaatcaaaatcag 18313162 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 301 aggttgtaattcacagcatcaggctttcaaaaaatagcaccatcagtgatgtgatcactg 360 |||||||||| || ||||| || || | ||||| |||||||||||||||||||| |||| Sbjct: 18312467 aggttgtaatccatagcataagactaccgaaaaacagcaccatcagtgatgtgattactg 18312526 Query: 361 acttgaagaccaaggt 376 || | || |||||||| Sbjct: 18312527 acctaaaaaccaaggt 18312542
>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138585 Score = 266 bits (134), Expect = 8e-68 Identities = 167/178 (93%) Strand = Plus / Plus Query: 23 gtcgaagcttcatacttatgatgatgttgttgagagagttgcacgccaacttggattgga 82 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 37707 gtcgaagcttcatacttatgatgatgttgttgagagagttgcacgccaacttggcttgga 37766 Query: 83 tgatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccaca 142 |||||||||||||||||| ||||| |||||||| || ||||| ||||||||||||||||| Sbjct: 37767 tgatccatcaaaaattcgccttacatctcacaactgttattcccagcaacctaaaccaca 37826 Query: 143 gcccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcag 200 ||| |||||||||||||| |||||||| ||||||||||||||||| ||||| |||||| Sbjct: 37827 gcctatcagatatcgtggtgtagagcacctattggatatgcttgttcattacaatcag 37884 Score = 127 bits (64), Expect = 5e-26 Identities = 97/108 (89%) Strand = Plus / Plus Query: 198 cagacttctgacatactgtattatgaagtcttggacattccactgccagaattgcagtgt 257 |||||||||||||| ||||||| || || ||||||||||||||||||||||||||||| Sbjct: 37961 cagacttctgacatcttgtattacgaggttctggacattccactgccagaattgcagtgt 38020 Query: 258 ttaaaaacacttaaagttgcttttcaccatgcaacgaaagatgaggtt 305 || ||||| ||||||||||| || ||||||||||| |||||||||||| Sbjct: 38021 ttgaaaactcttaaagttgcattccaccatgcaactaaagatgaggtt 38068 Score = 119 bits (60), Expect = 1e-23 Identities = 66/68 (97%) Strand = Plus / Plus Query: 439 agatatttccacctcatgagaagatagagaacataaatgatcagtactggacactacgtg 498 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 38571 agatatttccacctcacgagaaaatagagaacataaatgatcagtactggacactacgtg 38630 Query: 499 ctgaggag 506 |||||||| Sbjct: 38631 ctgaggag 38638 Score = 103 bits (52), Expect = 7e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 373 aggttgaactatccaatcctgatgctgagctccgcttgcttgaagttttctaccacaaga 432 |||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct: 38386 aggttgaactgtccaatcctgatgctgaactccgcttgcttgaagtattctatcacaaga 38445 Query: 433 tttataag 440 |||||||| Sbjct: 38446 tttataag 38453 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Plus Query: 588 cagcagattcagaattttggagatccctttttgctggttatccg 631 |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 38976 cagcagattcagaattttggagatccatttttgctggttatccg 39019 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 535 cacaggatcggttgattcacgtctatcatttcatgaaagatcctaatcagaatcag 590 |||| |||||||||||||| || || ||||||||||||||||||||||| |||||| Sbjct: 38780 cacatgatcggttgattcatgtttaccatttcatgaaagatcctaatcaaaatcag 38835 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 301 aggttgtaattcacagcatcaggctttcaaaaaatagcaccatcagtgatgtgatcactg 360 |||||||||| || ||||| || || | ||||| |||||||||||||||||||| |||| Sbjct: 38140 aggttgtaatccatagcataagactaccgaaaaacagcaccatcagtgatgtgattactg 38199 Query: 361 acttgaagaccaaggt 376 || | || |||||||| Sbjct: 38200 acctaaaaaccaaggt 38215
>dbj|AK059481.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F05, full insert sequence Length = 1098 Score = 222 bits (112), Expect = 1e-54 Identities = 175/196 (89%) Strand = Plus / Plus Query: 423 taccacaagatttataagatatttccacctcatgagaagatagagaacataaatgatcag 482 ||||||||||| |||||||| ||||||| ||||||||||||||||| || ||||||||| Sbjct: 23 taccacaagatatataagatttttccactccatgagaagatagagaatattaatgatcag 82 Query: 483 tactggacactacgtgctgaggagattccagaggaggagaagaatctcactgcacaggat 542 ||||||||||||||||||||||||||||||||||||||||| |||||| | || | ||| Sbjct: 83 tactggacactacgtgctgaggagattccagaggaggagaaaaatctcggtccaaatgat 142 Query: 543 cggttgattcacgtctatcatttcatgaaagatcctaatcagaatcagcagattcagaat 602 ||||| ||||| || ||||| ||||||||||| ||| ||||||||||||||||||||| Sbjct: 143 cggttaattcatgtttatcacttcatgaaagaccctcttcagaatcagcagattcagaac 202 Query: 603 tttggagatccctttt 618 ||||||||||| |||| Sbjct: 203 tttggagatccttttt 218
>gb|AY104559.1| Zea mays PCO133879 mRNA sequence Length = 962 Score = 178 bits (90), Expect = 1e-41 Identities = 144/162 (88%) Strand = Plus / Plus Query: 470 cataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaagaatct 529 |||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| Sbjct: 14 cataaatgatcagtactggacattacgagctgaggagattccagaggaagagaagaatct 73 Query: 530 cactgcacaggatcggttgattcacgtctatcatttcatgaaagatcctaatcagaatca 589 |||| || || |||||||| || |||||||| |||||||| |||||||||||||| Sbjct: 74 tggcccacatgaccgtttgattcatgtttatcattttatgaaagaccctaatcagaatca 133 Query: 590 gcagattcagaattttggagatccctttttgctggttatccg 631 ||||||||||||||| |||||||| |||||| |||||||||| Sbjct: 134 gcagattcagaatttcggagatccttttttgatggttatccg 175
>gb|DQ083192.1| Oryza sativa (indica cultivar-group) clone 5S5H65 mRNA sequence Length = 741 Score = 174 bits (88), Expect = 2e-40 Identities = 133/148 (89%) Strand = Plus / Plus Query: 484 actggacactacgtgctgaggagattccagaggaggagaagaatctcactgcacaggatc 543 ||||||||||||||||||||||||| |||||||| |||||||| || | || |||| Sbjct: 1 actggacactacgtgctgaggagataccagaggaagagaagaaccttggccctcatgatc 60 Query: 544 ggttgattcacgtctatcatttcatgaaagatcctaatcagaatcagcagattcagaatt 603 |||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 61 ggttgattcatgtttaccatttcatgaaagatcctaatcaaaatcagcagattcagaatt 120 Query: 604 ttggagatccctttttgctggttatccg 631 |||||||||| ||||||||||||||||| Sbjct: 121 ttggagatccatttttgctggttatccg 148
>ref|NM_112024.3| Arabidopsis thaliana cysteine-type endopeptidase/ double-stranded DNA binding / ubiquitin thiolesterase/ ubiquitin-specific protease AT3G11910 mRNA, complete cds Length = 3813 Score = 147 bits (74), Expect = 5e-32 Identities = 146/170 (85%) Strand = Plus / Plus Query: 84 gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 143 |||||||||||| || ||||||| |||||||||||||| ||||||||||| || || ||| Sbjct: 2616 gatccatcaaaacttaggcttacatctcacaattgctactctcagcaacccaagcctcag 2675 Query: 144 cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 203 || |||| ||| ||||||||||| ||||| | |||||| | || || ||||||||||| Sbjct: 2676 ccaatcaaataccgtggagtagatcatctttcagatatgttagttcactataatcagacg 2735 Query: 204 tctgacatactgtattatgaagtcttggacattccactgccagaattgca 253 ||||||||| ||||||||||||| ||||| ||||| || ||||||||||| Sbjct: 2736 tctgacatattgtattatgaagttttggatattcctcttccagaattgca 2785 Score = 40.1 bits (20), Expect = 8.6 Identities = 50/60 (83%) Strand = Plus / Plus Query: 468 aacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaagaat 527 ||||| ||||| ||||||||||| |||| || |||||||| || || || ||||||||| Sbjct: 3000 aacatcaatgaccagtactggactttacgagcagaggagatacctgaagaagagaagaat 3059
>gb|AY064010.1| Arabidopsis thaliana At3g11910 mRNA sequence Length = 4231 Score = 147 bits (74), Expect = 5e-32 Identities = 146/170 (85%) Strand = Plus / Plus Query: 84 gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 143 |||||||||||| || ||||||| |||||||||||||| ||||||||||| || || ||| Sbjct: 3108 gatccatcaaaacttaggcttacatctcacaattgctactctcagcaacccaagcctcag 3167 Query: 144 cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 203 || |||| ||| ||||||||||| ||||| | |||||| | || || ||||||||||| Sbjct: 3168 ccaatcaaataccgtggagtagatcatctttcagatatgttagttcactataatcagacg 3227 Query: 204 tctgacatactgtattatgaagtcttggacattccactgccagaattgca 253 ||||||||| ||||||||||||| ||||| ||||| || ||||||||||| Sbjct: 3228 tctgacatattgtattatgaagttttggatattcctcttccagaattgca 3277 Score = 40.1 bits (20), Expect = 8.6 Identities = 50/60 (83%) Strand = Plus / Plus Query: 468 aacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaagaat 527 ||||| ||||| ||||||||||| |||| || |||||||| || || || ||||||||| Sbjct: 3492 aacatcaatgaccagtactggactttacgagcagaggagatacctgaagaagagaagaat 3551
>gb|BT002760.1| Arabidopsis thaliana clone C105177 putative ubiquitin carboxyl-terminal hydrolase (At3g11910) mRNA, complete cds Length = 3379 Score = 147 bits (74), Expect = 5e-32 Identities = 146/170 (85%) Strand = Plus / Plus Query: 84 gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 143 |||||||||||| || ||||||| |||||||||||||| ||||||||||| || || ||| Sbjct: 2521 gatccatcaaaacttaggcttacatctcacaattgctactctcagcaacccaagcctcag 2580 Query: 144 cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 203 || |||| ||| ||||||||||| ||||| | |||||| | || || ||||||||||| Sbjct: 2581 ccaatcaaataccgtggagtagatcatctttcagatatgttagttcactataatcagacg 2640 Query: 204 tctgacatactgtattatgaagtcttggacattccactgccagaattgca 253 ||||||||| ||||||||||||| ||||| ||||| || ||||||||||| Sbjct: 2641 tctgacatattgtattatgaagttttggatattcctcttccagaattgca 2690 Score = 40.1 bits (20), Expect = 8.6 Identities = 50/60 (83%) Strand = Plus / Plus Query: 468 aacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaagaat 527 ||||| ||||| ||||||||||| |||| || |||||||| || || || ||||||||| Sbjct: 2905 aacatcaatgaccagtactggactttacgagcagaggagatacctgaagaagagaagaat 2964
>gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0077M24, complete sequence Length = 128920 Score = 133 bits (67), Expect = 8e-28 Identities = 145/171 (84%) Strand = Plus / Minus Query: 30 cttcatacttatgatgatgttgttgagagagttgcacgccaacttggattggatgatcca 89 |||||||| |||||||||||||||||||||||||| || || ||||| ||||||||||| Sbjct: 85606 cttcatacctatgatgatgttgttgagagagttgcccgtcagcttggtgtggatgatcca 85547 Query: 90 tcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacagcccatc 149 | |||||||| || || || || || |||||||| ||||| |||||||| || || ||| Sbjct: 85546 gcgaaaattcgtctaacatcccataactgctattcgcagcagcctaaaccgcaacctatc 85487 Query: 150 agatatcgtggagtagagcatctattggatatgcttgtccattataatcag 200 |||||||| ||||| |||||||| ||||| ||||| | |||||||||||| Sbjct: 85486 agatatcggggagtggagcatcttttggacatgctcattcattataatcag 85436 Score = 95.6 bits (48), Expect = 2e-16 Identities = 63/68 (92%) Strand = Plus / Minus Query: 439 agatatttccacctcatgagaagatagagaacataaatgatcagtactggacactacgtg 498 |||| ||||||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 84227 agatttttccactccatgagaagatagagaatattaatgatcagtactggacactacgtg 84168 Query: 499 ctgaggag 506 |||||||| Sbjct: 84167 ctgaggag 84160 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 198 cagacttctgacatactgtattatgaagtcttggacattccactgccagaattgcagtgt 257 ||||| || |||||| |||||||||| || ||||| ||||||||||||||||||||| | Sbjct: 85343 cagacatcagacatattgtattatgaggtgttggatattccactgccagaattgcagggc 85284 Query: 258 ttaaaaacacttaaagttgcttttcaccatgcaacgaaagatgaggtt 305 | ||||| || |||||||| || |||||||| || || ||||||||| Sbjct: 85283 ctgaaaaccctgaaagttgcattccaccatgctacaaaggatgaggtt 85236 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 505 agattccagaggaggagaagaatctcactgcacaggatcggttgattcacgtctatcatt 564 ||||||||||||||||||| |||||| | || | |||||||| ||||| || ||||| | Sbjct: 84025 agattccagaggaggagaaaaatctcggtccaaatgatcggttaattcatgtttatcact 83966 Query: 565 tcatgaaagatcctaatcagaatcag 590 |||||||||| ||| |||||||||| Sbjct: 83965 tcatgaaagaccctcttcagaatcag 83940 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 301 aggttgtaattcacagcatcaggctttcaaaaaatagcaccat 343 ||||||| |||||||| ||||||||| |||| ||||||||||| Sbjct: 85160 aggttgtgattcacagtatcaggcttccaaagaatagcaccat 85118 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 588 cagcagattcagaattttggagatccctttt 618 |||||||||||||| ||||||||||| |||| Sbjct: 83832 cagcagattcagaactttggagatccttttt 83802
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 8e-28 Identities = 145/171 (84%) Strand = Plus / Minus Query: 30 cttcatacttatgatgatgttgttgagagagttgcacgccaacttggattggatgatcca 89 |||||||| |||||||||||||||||||||||||| || || ||||| ||||||||||| Sbjct: 20650598 cttcatacctatgatgatgttgttgagagagttgcccgtcagcttggtgtggatgatcca 20650539 Query: 90 tcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacagcccatc 149 | |||||||| || || || || || |||||||| ||||| |||||||| || || ||| Sbjct: 20650538 gcgaaaattcgtctaacatcccataactgctattcgcagcagcctaaaccgcaacctatc 20650479 Query: 150 agatatcgtggagtagagcatctattggatatgcttgtccattataatcag 200 |||||||| ||||| |||||||| ||||| ||||| | |||||||||||| Sbjct: 20650478 agatatcggggagtggagcatcttttggacatgctcattcattataatcag 20650428 Score = 95.6 bits (48), Expect = 2e-16 Identities = 63/68 (92%) Strand = Plus / Minus Query: 439 agatatttccacctcatgagaagatagagaacataaatgatcagtactggacactacgtg 498 |||| ||||||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 20649219 agatttttccactccatgagaagatagagaatattaatgatcagtactggacactacgtg 20649160 Query: 499 ctgaggag 506 |||||||| Sbjct: 20649159 ctgaggag 20649152 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 198 cagacttctgacatactgtattatgaagtcttggacattccactgccagaattgcagtgt 257 ||||| || |||||| |||||||||| || ||||| ||||||||||||||||||||| | Sbjct: 20650335 cagacatcagacatattgtattatgaggtgttggatattccactgccagaattgcagggc 20650276 Query: 258 ttaaaaacacttaaagttgcttttcaccatgcaacgaaagatgaggtt 305 | ||||| || |||||||| || |||||||| || || ||||||||| Sbjct: 20650275 ctgaaaaccctgaaagttgcattccaccatgctacaaaggatgaggtt 20650228 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 505 agattccagaggaggagaagaatctcactgcacaggatcggttgattcacgtctatcatt 564 ||||||||||||||||||| |||||| | || | |||||||| ||||| || ||||| | Sbjct: 20649017 agattccagaggaggagaaaaatctcggtccaaatgatcggttaattcatgtttatcact 20648958 Query: 565 tcatgaaagatcctaatcagaatcag 590 |||||||||| ||| |||||||||| Sbjct: 20648957 tcatgaaagaccctcttcagaatcag 20648932 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 301 aggttgtaattcacagcatcaggctttcaaaaaatagcaccat 343 ||||||| |||||||| ||||||||| |||| ||||||||||| Sbjct: 20650152 aggttgtgattcacagtatcaggcttccaaagaatagcaccat 20650110 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 588 cagcagattcagaattttggagatccctttt 618 |||||||||||||| ||||||||||| |||| Sbjct: 20648824 cagcagattcagaactttggagatccttttt 20648794
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 8e-28 Identities = 145/171 (84%) Strand = Plus / Minus Query: 30 cttcatacttatgatgatgttgttgagagagttgcacgccaacttggattggatgatcca 89 |||||||| |||||||||||||||||||||||||| || || ||||| ||||||||||| Sbjct: 20960833 cttcatacctatgatgatgttgttgagagagttgcccgtcagcttggtgtggatgatcca 20960774 Query: 90 tcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacagcccatc 149 | |||||||| || || || || || |||||||| ||||| |||||||| || || ||| Sbjct: 20960773 gcgaaaattcgtctaacatcccataactgctattcgcagcagcctaaaccgcaacctatc 20960714 Query: 150 agatatcgtggagtagagcatctattggatatgcttgtccattataatcag 200 |||||||| ||||| |||||||| ||||| ||||| | |||||||||||| Sbjct: 20960713 agatatcggggagtggagcatcttttggacatgctcattcattataatcag 20960663 Score = 95.6 bits (48), Expect = 2e-16 Identities = 63/68 (92%) Strand = Plus / Minus Query: 439 agatatttccacctcatgagaagatagagaacataaatgatcagtactggacactacgtg 498 |||| ||||||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 20959454 agatttttccactccatgagaagatagagaatattaatgatcagtactggacactacgtg 20959395 Query: 499 ctgaggag 506 |||||||| Sbjct: 20959394 ctgaggag 20959387 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 198 cagacttctgacatactgtattatgaagtcttggacattccactgccagaattgcagtgt 257 ||||| || |||||| |||||||||| || ||||| ||||||||||||||||||||| | Sbjct: 20960570 cagacatcagacatattgtattatgaggtgttggatattccactgccagaattgcagggc 20960511 Query: 258 ttaaaaacacttaaagttgcttttcaccatgcaacgaaagatgaggtt 305 | ||||| || |||||||| || |||||||| || || ||||||||| Sbjct: 20960510 ctgaaaaccctgaaagttgcattccaccatgctacaaaggatgaggtt 20960463 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 505 agattccagaggaggagaagaatctcactgcacaggatcggttgattcacgtctatcatt 564 ||||||||||||||||||| |||||| | || | |||||||| ||||| || ||||| | Sbjct: 20959252 agattccagaggaggagaaaaatctcggtccaaatgatcggttaattcatgtttatcact 20959193 Query: 565 tcatgaaagatcctaatcagaatcag 590 |||||||||| ||| |||||||||| Sbjct: 20959192 tcatgaaagaccctcttcagaatcag 20959167 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 301 aggttgtaattcacagcatcaggctttcaaaaaatagcaccat 343 ||||||| |||||||| ||||||||| |||| ||||||||||| Sbjct: 20960387 aggttgtgattcacagtatcaggcttccaaagaatagcaccat 20960345 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 588 cagcagattcagaattttggagatccctttt 618 |||||||||||||| ||||||||||| |||| Sbjct: 20959059 cagcagattcagaactttggagatccttttt 20959029
>ref|NM_120743.2| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); cysteine-type endopeptidase/ double-stranded DNA binding / ubiquitin thiolesterase/ ubi> AT5G06600 (UBP12) transcript variant AT5G06600.1 mRNA, complete cds Length = 3898 Score = 103 bits (52), Expect = 7e-19 Identities = 172/212 (81%) Strand = Plus / Plus Query: 84 gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 143 |||||||| ||| || ||||||| ||||||||||||||||| |||||||| || || ||| Sbjct: 2633 gatccatccaaacttaggcttacatctcacaattgctattcccagcaacccaagcctcag 2692 Query: 144 cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 203 || |||| || ||||||||||| ||| | | |||||| | || ||||| |||||||| Sbjct: 2693 cctatcaagtaccgtggagtagaccatttgtcagatatgttagttcattacaatcagacg 2752 Query: 204 tctgacatactgtattatgaagtcttggacattccactgccagaattgcagtgtttaaaa 263 |||||||| ||||||||||||| ||||||| || || |||||||| || || | ||| Sbjct: 2753 tctgacattttgtattatgaagttctggacatccctcttccagaattacaaggtcttaaa 2812 Query: 264 acacttaaagttgcttttcaccatgcaacgaa 295 || | ||||||||||| || ||||| ||||| Sbjct: 2813 accttaaaagttgctttccatcatgccacgaa 2844 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 465 gagaacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaag 524 ||||| |||||||| ||||||||||| |||| |||||||||||||| || || |||||| Sbjct: 3014 gagaatataaatgaccagtactggactttacgagctgaggagattccggaagaagagaag 3073 Query: 525 aat 527 ||| Sbjct: 3074 aat 3076
>ref|NM_180452.1| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); cysteine-type endopeptidase/ double-stranded DNA binding / ubiquitin thiolesterase/ ubi> AT5G06600 (UBP12) transcript variant AT5G06600.2 mRNA, complete cds Length = 3897 Score = 103 bits (52), Expect = 7e-19 Identities = 172/212 (81%) Strand = Plus / Plus Query: 84 gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 143 |||||||| ||| || ||||||| ||||||||||||||||| |||||||| || || ||| Sbjct: 2632 gatccatccaaacttaggcttacatctcacaattgctattcccagcaacccaagcctcag 2691 Query: 144 cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 203 || |||| || ||||||||||| ||| | | |||||| | || ||||| |||||||| Sbjct: 2692 cctatcaagtaccgtggagtagaccatttgtcagatatgttagttcattacaatcagacg 2751 Query: 204 tctgacatactgtattatgaagtcttggacattccactgccagaattgcagtgtttaaaa 263 |||||||| ||||||||||||| ||||||| || || |||||||| || || | ||| Sbjct: 2752 tctgacattttgtattatgaagttctggacatccctcttccagaattacaaggtcttaaa 2811 Query: 264 acacttaaagttgcttttcaccatgcaacgaa 295 || | ||||||||||| || ||||| ||||| Sbjct: 2812 accttaaaagttgctttccatcatgccacgaa 2843 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 465 gagaacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaag 524 ||||| |||||||| ||||||||||| |||| |||||||||||||| || || |||||| Sbjct: 3013 gagaatataaatgaccagtactggactttacgagctgaggagattccggaagaagagaag 3072 Query: 525 aat 527 ||| Sbjct: 3073 aat 3075
>gb|AY142616.1| Arabidopsis thaliana putative ubiquitin-specific protease UBP12 (At5g06600) mRNA, complete cds Length = 3379 Score = 103 bits (52), Expect = 7e-19 Identities = 172/212 (81%) Strand = Plus / Plus Query: 84 gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 143 |||||||| ||| || ||||||| ||||||||||||||||| |||||||| || || ||| Sbjct: 2521 gatccatccaaacttaggcttacatctcacaattgctattcccagcaacccaagcctcag 2580 Query: 144 cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 203 || |||| || ||||||||||| ||| | | |||||| | || ||||| |||||||| Sbjct: 2581 cctatcaagtaccgtggagtagaccatttgtcagatatgttagttcattacaatcagacg 2640 Query: 204 tctgacatactgtattatgaagtcttggacattccactgccagaattgcagtgtttaaaa 263 |||||||| ||||||||||||| ||||||| || || |||||||| || || | ||| Sbjct: 2641 tctgacattttgtattatgaagttctggacatccctcttccagaattacaaggtcttaaa 2700 Query: 264 acacttaaagttgcttttcaccatgcaacgaa 295 || | ||||||||||| || ||||| ||||| Sbjct: 2701 accttaaaagttgctttccatcatgccacgaa 2732 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 465 gagaacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaag 524 ||||| |||||||| ||||||||||| |||| |||||||||||||| || || |||||| Sbjct: 2902 gagaatataaatgaccagtactggactttacgagctgaggagattccggaagaagagaag 2961 Query: 525 aat 527 ||| Sbjct: 2962 aat 2964
>gb|AF360198.1| Arabidopsis thaliana putative ubiquitin-specific protease UBP12 (At5g06600) mRNA, complete cds Length = 3890 Score = 103 bits (52), Expect = 7e-19 Identities = 172/212 (81%) Strand = Plus / Plus Query: 84 gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 143 |||||||| ||| || ||||||| ||||||||||||||||| |||||||| || || ||| Sbjct: 2632 gatccatccaaacttaggcttacatctcacaattgctattcccagcaacccaagcctcag 2691 Query: 144 cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 203 || |||| || ||||||||||| ||| | | |||||| | || ||||| |||||||| Sbjct: 2692 cctatcaagtaccgtggagtagaccatttgtcagatatgttagttcattacaatcagacg 2751 Query: 204 tctgacatactgtattatgaagtcttggacattccactgccagaattgcagtgtttaaaa 263 |||||||| ||||||||||||| ||||||| || || |||||||| || || | ||| Sbjct: 2752 tctgacattttgtattatgaagttctggacatccctcttccagaattacaaggtcttaaa 2811 Query: 264 acacttaaagttgcttttcaccatgcaacgaa 295 || | ||||||||||| || ||||| ||||| Sbjct: 2812 accttaaaagttgctttccatcatgccacgaa 2843 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 465 gagaacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaag 524 ||||| |||||||| ||||||||||| |||| |||||||||||||| || || |||||| Sbjct: 3013 gagaatataaatgaccagtactggactttacgagctgaggagattccggaagaagagaag 3072 Query: 525 aat 527 ||| Sbjct: 3073 aat 3075
>gb|AF302663.1|AF302663 Arabidopsis thaliana ubiquitin-specific protease 12 (UBP12) mRNA, complete cds Length = 3427 Score = 103 bits (52), Expect = 7e-19 Identities = 172/212 (81%) Strand = Plus / Plus Query: 84 gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 143 |||||||| ||| || ||||||| ||||||||||||||||| |||||||| || || ||| Sbjct: 2560 gatccatccaaacttaggcttacatctcacaattgctattcccagcaacccaagcctcag 2619 Query: 144 cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 203 || |||| || ||||||||||| ||| | | |||||| | || ||||| |||||||| Sbjct: 2620 cctatcaagtaccgtggagtagaccatttgtcagatatgttagttcattacaatcagacg 2679 Query: 204 tctgacatactgtattatgaagtcttggacattccactgccagaattgcagtgtttaaaa 263 |||||||| ||||||||||||| ||||||| || || |||||||| || || | ||| Sbjct: 2680 tctgacattttgtattatgaagttctggacatccctcttccagaattacaaggtcttaaa 2739 Query: 264 acacttaaagttgcttttcaccatgcaacgaa 295 || | ||||||||||| || ||||| ||||| Sbjct: 2740 accttaaaagttgctttccatcatgccacgaa 2771 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 465 gagaacataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaag 524 ||||| |||||||| ||||||||||| |||| |||||||||||||| || || |||||| Sbjct: 2941 gagaatataaatgaccagtactggactttacgagctgaggagattccggaagaagagaag 3000 Query: 525 aat 527 ||| Sbjct: 3001 aat 3003
>gb|BT018385.1| Zea mays clone EL01N0312A04.d mRNA sequence Length = 1626 Score = 101 bits (51), Expect = 3e-18 Identities = 91/103 (88%), Gaps = 1/103 (0%) Strand = Plus / Plus Query: 43 atgatgttgttgagagagttgcacgccaacttggattggatgatccatcaaaaattcggc 102 |||||||||||||| ||||||| || ||||||| |||||| || ||| |||| |||||| Sbjct: 1343 atgatgttgttgagggagttgctcgtcaacttgaattggaccatgcatgaaaa-ttcggc 1401 Query: 103 ttacgtctcacaattgctattctcagcaacctaaaccacagcc 145 |||| || ||||||||||| ||||||||||||||||||||||| Sbjct: 1402 ttacatcccacaattgctaatctcagcaacctaaaccacagcc 1444
>ref|XM_476711.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3351 Score = 93.7 bits (47), Expect = 7e-16 Identities = 101/119 (84%) Strand = Plus / Plus Query: 411 cttgaagttttctaccacaagatttataagatatttccacctcatgagaagatagagaac 470 ||||| |||||||| |||||||| || ||||| ||| |||| |||| |||||||| ||| Sbjct: 2854 cttgaggttttctatcacaagatatacaagatttttgcaccgaatgaaaagatagaaaac 2913 Query: 471 ataaatgatcagtactggacactacgtgctgaggagattccagaggaggagaagaatct 529 || ||||||||||||||||| || ||||| |||||| |||| ||||| ||||| ||||| Sbjct: 2914 atcaatgatcagtactggaccctgcgtgcagaggaggttccggaggaagagaaaaatct 2972 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Plus Query: 192 tataatcagacttctgacatactgtattatgaagtcttggacattccactgccagaatt 250 ||||| ||||||||||| || || || |||||||| ||||| || ||||| |||||||| Sbjct: 2635 tataaccagacttctgatattctttactatgaagtattggatataccactcccagaatt 2693 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Plus Query: 93 aaaattcggcttacgtctcacaattgctattctcagcaacctaaacc 139 |||||||||||||| || || || || |||||||| ||||||||||| Sbjct: 2536 aaaattcggcttacatcgcataactgttattctcaacaacctaaacc 2582
>gb|AC016795.6|ATAC016795 Arabidopsis thaliana chromosome III BAC F26K24 genomic sequence, complete sequence Length = 100835 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Minus Query: 84 gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 143 |||||||||||| || ||||||| |||||||||||||| ||||||||||| || || ||| Sbjct: 64380 gatccatcaaaacttaggcttacatctcacaattgctactctcagcaacccaagcctcag 64321 Query: 144 cccatcagatatcgtggagtagagcatct 172 || |||| ||| ||||||||||| ||||| Sbjct: 64320 ccaatcaaataccgtggagtagatcatct 64292 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 198 cagacttctgacatactgtattatgaagtcttggacattccactgccagaattgca 253 ||||| ||||||||| ||||||||||||| ||||| ||||| || ||||||||||| Sbjct: 64170 cagacgtctgacatattgtattatgaagttttggatattcctcttccagaattgca 64115
>dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7 Length = 74350 Score = 69.9 bits (35), Expect = 1e-08 Identities = 71/83 (85%) Strand = Plus / Minus Query: 84 gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 143 |||||||| ||| || ||||||| ||||||||||||||||| |||||||| || || ||| Sbjct: 46129 gatccatccaaacttaggcttacatctcacaattgctattcccagcaacccaagcctcag 46070 Query: 144 cccatcagatatcgtggagtaga 166 || |||| || ||||||||||| Sbjct: 46069 cctatcaagtaccgtggagtaga 46047 Score = 46.1 bits (23), Expect = 0.14 Identities = 80/99 (80%) Strand = Plus / Minus Query: 197 tcagacttctgacatactgtattatgaagtcttggacattccactgccagaattgcagtg 256 |||||| |||||||| ||||||||||||| ||||||| || || |||||||| || | Sbjct: 45925 tcagacgtctgacattttgtattatgaagttctggacatccctcttccagaattacaagg 45866 Query: 257 tttaaaaacacttaaagttgcttttcaccatgcaacgaa 295 | | ||||| | ||||||||||| || ||||| ||||| Sbjct: 45865 tcttaaaaccttaaaagttgctttccatcatgccacgaa 45827 Score = 44.1 bits (22), Expect = 0.55 Identities = 37/42 (88%) Strand = Plus / Minus Query: 465 gagaacataaatgatcagtactggacactacgtgctgaggag 506 ||||| |||||||| ||||||||||| |||| ||||||||| Sbjct: 45338 gagaatataaatgaccagtactggactttacgagctgaggag 45297
>gb|AC171736.1| Lycopersicon esculentum chromosome 11 clone C11HBa0323E19, complete sequence Length = 141216 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 439 agatatttccacctcatgagaagatagagaacataaatgatcagtactggaca 491 ||||||||||| | |||||||||||||||||||||||| |||||||||||| Sbjct: 42975 agatatttccaacaagtgagaagatagagaacataaatgaccagtactggaca 43027 Score = 63.9 bits (32), Expect = 6e-07 Identities = 74/88 (84%) Strand = Plus / Plus Query: 214 tgtattatgaagtcttggacattccactgccagaattgcagtgtttaaaaacacttaaag 273 |||| |||||||| |||||||||| ||||||||||||| |||||||||| | |||| Sbjct: 42285 tgtactatgaagtactggacattcctttgccagaattgcaaggtttaaaaaccttaaaag 42344 Query: 274 ttgcttttcaccatgcaacgaaagatga 301 | |||||||| ||||| || |||||||| Sbjct: 42345 tagcttttcatcatgctaccaaagatga 42372 Score = 58.0 bits (29), Expect = 4e-05 Identities = 95/117 (81%) Strand = Plus / Plus Query: 34 atacttatgatgatgttgttgagagagttgcacgccaacttggattggatgatccatcaa 93 |||| |||||||| ||||| || ||||| || | | |||||| |||||||||||||| | Sbjct: 42029 atacatatgatgaagttgtggaaagagtagctcagcgacttggcttggatgatccatcca 42088 Query: 94 aaattcggcttacgtctcacaattgctattctcagcaacctaaaccacagcccatca 150 |||| |||| || | || ||||| || ||||||||||||||||| ||||| |||| Sbjct: 42089 aaataaggctcacaccccataattgttactctcagcaacctaaaccccagccgatca 42145
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 454 atgagaagatagagaacataaatgatcagtactggacactacgtgctgaggag 506 |||| |||||||| ||||| ||||||||||||||||| || ||||| |||||| Sbjct: 3453515 atgaaaagatagaaaacatcaatgatcagtactggaccctgcgtgcagaggag 3453567 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Plus Query: 93 aaaattcggcttacgtctcacaattgctattctcagcaacctaaacc 139 |||||||||||||| || || || || |||||||| ||||||||||| Sbjct: 3452767 aaaattcggcttacatcgcataactgttattctcaacaacctaaacc 3452813 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 198 cagacttctgacatactgtattatgaagtcttggacattccactgccagaatt 250 ||||||||||| || || || |||||||| ||||| || ||||| |||||||| Sbjct: 3452968 cagacttctgatattctttactatgaagtattggatataccactcccagaatt 3453020
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0428D12 Length = 141678 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 454 atgagaagatagagaacataaatgatcagtactggacactacgtgctgaggag 506 |||| |||||||| ||||| ||||||||||||||||| || ||||| |||||| Sbjct: 93335 atgaaaagatagaaaacatcaatgatcagtactggaccctgcgtgcagaggag 93387 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Plus Query: 93 aaaattcggcttacgtctcacaattgctattctcagcaacctaaacc 139 |||||||||||||| || || || || |||||||| ||||||||||| Sbjct: 92587 aaaattcggcttacatcgcataactgttattctcaacaacctaaacc 92633 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 198 cagacttctgacatactgtattatgaagtcttggacattccactgccagaatt 250 ||||||||||| || || || |||||||| ||||| || ||||| |||||||| Sbjct: 92788 cagacttctgatattctttactatgaagtattggatataccactcccagaatt 92840
>gb|AY111375.1| Zea mays CL38709_1 mRNA sequence Length = 1037 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 478 atcagtactggacactacgtgctgaggagattccagaggaggag 521 |||||||||||||||| ||||| |||||| ||||||| |||||| Sbjct: 1037 atcagtactggacactgcgtgcggaggaggttccagatgaggag 994
>dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02D13, TM0546, complete sequence Length = 107979 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 79 tggatgatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaac 138 |||| |||||||| |||||| ||||||| | ||||| ||||| ||||| |||||||||| Sbjct: 78918 tggacgatccatccaaaattaggcttaccccacacaactgctactctcaacaacctaaac 78859 Query: 139 cacagcc 145 | ||||| Sbjct: 78858 cccagcc 78852 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 470 cataaatgatcagtactggacactacgtgctgaggag 506 |||||||||||| ||||||||| | ||||| |||||| Sbjct: 77862 cataaatgatcaatactggacattgcgtgcagaggag 77826
>emb|CR936945.2| Medicago truncatula chromosome 5 clone mte1-67e6, COMPLETE SEQUENCE Length = 127675 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 454 atgagaagatagagaacataaatgatcagtactggacactacgtgctgaggag 506 |||| ||||| || ||||||||||| || |||||||||||||| || |||||| Sbjct: 4306 atgaaaagattgaaaacataaatgaccaatactggacactacgagccgaggag 4358
>emb|AL445487.8| Human DNA sequence from clone RP11-417L14 on chromosome 9 Contains a karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2) pseudogene, complete sequence Length = 112031 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 519 gagaagaatctcactgcacagg 540 |||||||||||||||||||||| Sbjct: 19954 gagaagaatctcactgcacagg 19933
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 256 gtttaaaaacacttaaagttgc 277 |||||||||||||||||||||| Sbjct: 525575 gtttaaaaacacttaaagttgc 525554
>emb|AL451103.7| Human DNA sequence from clone RP11-172M3 on chromosome Xp21.1-21.2 Contains a CpG island, complete sequence Length = 175384 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 591 cagattcagaattttggagat 611 ||||||||||||||||||||| Sbjct: 91704 cagattcagaattttggagat 91724
>emb|AL662883.8| Mouse DNA sequence from clone RP23-195I1 on chromosome 11, complete sequence Length = 38413 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 457 agaagatagagaacataaatg 477 ||||||||||||||||||||| Sbjct: 5765 agaagatagagaacataaatg 5745
>gb|AY900582.1| Monascus pilosus non-LTR retrotransposon MRT1, complete sequence; DNA primase, matrix protein, and exonuclease genes, complete cds; non-LTR retrotransposon MRT2, complete sequence; and unknown genes Length = 24200 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 400 agctccgcttgcttgaagttttcta 424 ||||| ||||||||||||||||||| Sbjct: 12357 agctctgcttgcttgaagttttcta 12333
>gb|AC131775.4| Mus musculus BAC clone RP24-313O6 from 6, complete sequence Length = 171720 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 318 atcaggctttcaaaaaatagc 338 ||||||||||||||||||||| Sbjct: 58258 atcaggctttcaaaaaatagc 58278
>emb|CR524482.18| Zebrafish DNA sequence from clone DKEY-109F24 in linkage group 15, complete sequence Length = 125769 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 tgtttaaaaacacttaaagtt 275 ||||||||||||||||||||| Sbjct: 13278 tgtttaaaaacacttaaagtt 13298
>emb|AL669949.11| Mouse DNA sequence from clone RP23-227I2 on chromosome 4, complete sequence Length = 124454 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 257 tttaaaaacacttaaagttgctttt 281 ||||||||||||||||| ||||||| Sbjct: 64168 tttaaaaacacttaaagctgctttt 64144
>gb|AC108875.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1123_C08, complete sequence Length = 132017 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ttcatacttatgatgatgtt 50 |||||||||||||||||||| Sbjct: 122852 ttcatacttatgatgatgtt 122833
>gb|AC137617.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0084P24, complete sequence Length = 148784 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ttcatacttatgatgatgtt 50 |||||||||||||||||||| Sbjct: 72464 ttcatacttatgatgatgtt 72445
>gb|AC139580.4| Mus musculus BAC clone RP23-110M15 from chromosome 13, complete sequence Length = 205480 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 ggattggatgatccatcaaa 94 |||||||||||||||||||| Sbjct: 124502 ggattggatgatccatcaaa 124521
>gb|AC107274.11| Rattus norvegicus 18 BAC CH230-207M17 (Children's Hospital Oakland Research Institute) complete sequence Length = 217066 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 gagaagatagagaacataaa 475 |||||||||||||||||||| Sbjct: 183090 gagaagatagagaacataaa 183071
>ref|XM_734749.1| Plasmodium chabaudi chabaudi ubiquitin activating enzyme, (PC000817.00.0) partial mRNA Length = 1398 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 tattggatatgcttgtccattata 195 |||||||||| ||||||||||||| Sbjct: 453 tattggatatacttgtccattata 430
>emb|AL135786.17| Human DNA sequence from clone RP11-12D24 on chromosome 9p23-24.3 Contains the RLN1 gene for relaxin 1(H1) (RLXH1),the RLN2 gene for relaxin 2 (H2) (RLXH2), a high-mobility group nucleosomal binding domain 2 (HMGN2) pseudogene, a novel pseudogene, the gene for uncharacterized hematopoietic stem/progenitor cells protein (MDS030), a novel pseudogene (FLJ39176) and four CpG islands, complete sequence Length = 156592 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 571 aagatcctaatcagaatcagcaga 594 ||||| |||||||||||||||||| Sbjct: 81185 aagattctaatcagaatcagcaga 81208
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tcagtgatgtgatcactgac 362 |||||||||||||||||||| Sbjct: 102805 tcagtgatgtgatcactgac 102786
>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14 Length = 347894 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tcagtgatgtgatcactgac 362 |||||||||||||||||||| Sbjct: 20007 tcagtgatgtgatcactgac 19988
>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12 Length = 349346 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 tcagtgatgtgatcactgac 362 |||||||||||||||||||| Sbjct: 291540 tcagtgatgtgatcactgac 291559
>gb|AC122587.5| Rattus norvegicus BAC CH230-173H6 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 202972 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ccatcagtgatgtgatcact 359 |||||||||||||||||||| Sbjct: 60118 ccatcagtgatgtgatcact 60137
>gb|AC144770.1| Homo sapiens chromosome 19 clone XXfos-87852H4, complete sequence Length = 45852 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 attctcagcaacctaaacca 140 |||||||||||||||||||| Sbjct: 37247 attctcagcaacctaaacca 37228
>emb|BX005100.9| Mouse DNA sequence from clone RP23-76P22 on chromosome 11 Contains part of the gene for a novel protein (C230094A16Rik), the gene for a novel protein (4931440F15Rik) similar to Mus musculus feminization 1 homolog a (C. elegans) (Fem1a), a ribosomal protein L23 (Rpl23) pseudogene, a preferentially expressed antigen in melanoma like 5 (Pramel5) pseudogene and a CpG island, complete sequence Length = 193116 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 595 ttcagaattttggagatccctttt 618 ||||||||||||||| |||||||| Sbjct: 30885 ttcagaattttggagttccctttt 30862
>gb|AC092312.3| Homo sapiens chromosome 19 clone LLNLR-288G3, complete sequence Length = 40328 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 attctcagcaacctaaacca 140 |||||||||||||||||||| Sbjct: 17906 attctcagcaacctaaacca 17925
>gb|AC023932.11| Homo sapiens chromosome 18, clone RP11-510D21, complete sequence Length = 166125 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcagatatcgtggagtagag 167 |||||||||||||||||||| Sbjct: 160999 tcagatatcgtggagtagag 161018
>gb|AC090824.6| Homo sapiens chromosome 17, clone CTD-2532B14, complete sequence Length = 187161 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cttttcaccatgcaacgaaa 296 |||||||||||||||||||| Sbjct: 103224 cttttcaccatgcaacgaaa 103205
>gb|AC091577.9| Homo sapiens chromosome 18, clone RP11-704J2, complete sequence Length = 158840 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcagatatcgtggagtagag 167 |||||||||||||||||||| Sbjct: 14220 tcagatatcgtggagtagag 14239
>gb|AC023119.8| Homo sapiens BAC clone RP11-282B13 from 4, complete sequence Length = 184121 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 tgatgtgatcactgacttgaagac 370 ||||||||||||||| |||||||| Sbjct: 49183 tgatgtgatcactgatttgaagac 49160
>gb|AC025505.11| Homo sapiens, clone RP11-651N3, complete sequence Length = 166426 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cttttcaccatgcaacgaaa 296 |||||||||||||||||||| Sbjct: 18572 cttttcaccatgcaacgaaa 18591
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ttcatacttatgatgatgtt 50 |||||||||||||||||||| Sbjct: 20234192 ttcatacttatgatgatgtt 20234173
>gb|AC093412.3| Homo sapiens chromosome 3 clone RP11-11L6, complete sequence Length = 178447 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gctttcaaaaaatagcacca 342 |||||||||||||||||||| Sbjct: 159895 gctttcaaaaaatagcacca 159876
>gb|AC167016.5| Mus musculus chromosome 3, clone RP23-76C12, complete sequence Length = 225524 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 cacagcatcaggctttcaaa 331 |||||||||||||||||||| Sbjct: 184037 cacagcatcaggctttcaaa 184056
>gb|AC164881.2| Mus musculus BAC clone RP23-246D7 from chromosome 9, complete sequence Length = 201645 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 aagatatttccacctcatga 457 |||||||||||||||||||| Sbjct: 188071 aagatatttccacctcatga 188090
>emb|AL732296.11| Mouse DNA sequence from clone RP23-131P6 on chromosome 2, complete sequence Length = 203503 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 taattcacagcatcaggctt 326 |||||||||||||||||||| Sbjct: 117412 taattcacagcatcaggctt 117393 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,702,503 Number of Sequences: 3902068 Number of extensions: 6702503 Number of successful extensions: 140478 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 140048 Number of HSP's gapped (non-prelim): 416 length of query: 631 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 608 effective length of database: 17,143,297,704 effective search space: 10423125004032 effective search space used: 10423125004032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
