ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags36o06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108694.1| Zea mays PCO116965 mRNA sequence 295 9e-77
2gb|BT018942.1| Zea mays clone Contig90.F mRNA sequence 256 8e-65
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
4dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
5gb|AC126786.22| Medicago truncatula clone mth2-8c2, complete seq... 46 0.14
6gb|AC144482.11| Medicago truncatula clone mth2-10p1, complete se... 46 0.14
7gb|AC011358.7| Homo sapiens chromosome 5 clone CTC-367D15, compl... 46 0.14
8gb|AC022440.7| Homo sapiens chromosome 5 clone RP11-20O22, compl... 46 0.14
9ref|NM_103436.1| Arabidopsis thaliana unknown protein AT1G42480 ... 44 0.57
10dbj|AK054373.1| Mus musculus 2 days pregnant adult female ovary ... 44 0.57
11emb|BX818143.1|CNS0AE8G Arabidopsis thaliana Full-length cDNA Co... 44 0.57
12gb|AY088187.1| Arabidopsis thaliana clone 42677 mRNA, complete s... 44 0.57
13dbj|AK175854.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 44 0.57
14gb|AC107633.11| Mus musculus chromosome 12, clone RP23-7P3, comp... 44 0.57
15gb|AC122460.4| Mus musculus BAC clone RP24-283I1 from chromosome... 42 2.2
16emb|AL354833.9| Human DNA sequence from clone RP11-157L14 on chr... 42 2.2
17emb|AL136379.19| Human DNA sequence from clone RP5-881P19 on chr... 42 2.2
18gb|AC155101.19| Medicago truncatula clone mth2-139j13, complete ... 42 2.2
19gb|AC025815.10|AC025815 Arabidopsis thaliana chromosome 1 BAC T8... 42 2.2
20gb|AC004916.2|AC004916 Homo sapiens PAC clone RP5-891L14 from 7p... 42 2.2
21ref|XM_221315.3| PREDICTED: Rattus norvegicus similar to mKIAA08... 42 2.2
22dbj|AB007650.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.2
23dbj|AP000722.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.2
24gb|AC151413.2| Mus musculus BAC clone RP23-103N6 from 19, comple... 42 2.2
25gb|AC138300.8| Mus musculus chromosome 14, clone RP23-187B20, co... 40 8.9
26gb|AE013171.1| Thermoanaerobacter tengcongensis MB4, section 198... 40 8.9
27gb|AC183271.3| Pan troglodytes BAC clone CH251-356H14 from chrom... 40 8.9
28gb|AC117837.4| Mus musculus BAC clone RP24-196P11 from 10, compl... 40 8.9
29gb|AC099681.4| Homo sapiens BAC clone RP11-310H4 from 7, complet... 40 8.9
30gb|AC073193.10| Homo sapiens BAC clone RP11-175C14 from 7, compl... 40 8.9
31gb|AC117671.8| Mus musculus chromosome 10, clone RP23-389G8, com... 40 8.9
32gb|AC144511.1| Pan troglodytes BAC clone RP43-45C15 from 7, comp... 40 8.9
33emb|BX571660.1| Wolinella succinogenes, complete genome; segment... 40 8.9
34emb|AJ628943.1| Leishmania infantum cpb gene for cathepsin L-lik... 40 8.9
35gb|AC153363.4| Mus musculus BAC clone RP23-5I6 from chromosome 9... 40 8.9
36gb|AC154549.2| Mus musculus BAC clone RP23-443L15 from chromosom... 40 8.9
37gb|AC154676.2| Mus musculus BAC clone RP23-146O19 from 17, compl... 40 8.9
38gb|AC126669.4| Mus musculus BAC clone RP24-457D15 from 9, comple... 40 8.9
39emb|AL807377.10| Zebrafish DNA sequence from clone CH211-229G3, ... 40 8.9
40gb|AC148016.3| Mus musculus BAC clone RP23-71B24 from 19, comple... 40 8.9
41gb|AC131902.6| Homo sapiens chromosome 8, clone RP11-1081M5, com... 40 8.9
42gb|AC087587.14| Homo sapiens 12 BAC CTC-465D4 (CalTech Human BAC... 40 8.9 
>gb|AY108694.1| Zea mays PCO116965 mRNA sequence
          Length = 1060

 Score =  295 bits (149), Expect = 9e-77
 Identities = 368/441 (83%)
 Strand = Plus / Plus

                                                                       
Query: 2   ccgccatcggcgacaagtgcgccgcctgcaaggccgtcgcggctgagctagagattggaa 61
           |||||||||| |||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 204 ccgccatcggagacaagtgcgccgcctgcaaggccgttgctgcggagctagagattggaa 263

                                                                       
Query: 62  tctccagcgagaaaccaagaaatcacttggacttgcgtaaccgcttgaattcgaaaggtc 121
           | || || ||||| || |||||||||||||||||||| |||||||| ||||| ||||| |
Sbjct: 264 tttcgagtgagaagccgagaaatcacttggacttgcgcaaccgcttaaattctaaaggcc 323

                                                                       
Query: 122 agcgtgaagggaaggtcatcgactacagagtcagcgagcttcgaatcgtagagcttctgg 181
           || | || ||||||||||| || || || ||||| ||||||||  | || || |||||||
Sbjct: 324 agagggaggggaaggtcattgattatagggtcagtgagcttcgggttgtggaacttctgg 383

                                                                       
Query: 182 atgacctatgtgataagatgcaagactatacgttgcagaagtcggaatcaggcgagaaag 241
           ||| |||||| |||||||||||||| ||||| ||  |||||| |||||||||||| || |
Sbjct: 384 atggcctatgcgataagatgcaagattataccttaaagaagttggaatcaggcgaaaagg 443

                                                                       
Query: 242 aatgggtgaaagtagcaaactggagcagttttcaaactgataagaaagctgcagcacgag 301
            |||||| |||||| || ||||||  || ||||||||||| || || || |||||| |||
Sbjct: 444 gatgggttaaagtaacagactggaatagctttcaaactgaaaataaggcagcagcaagag 503

                                                                       
Query: 302 cacactccaaaaatttatccagttactgtggaaggttactggaggaaactgaggacgagc 361
           | ||||||||||| || ||||  | |||||||||| ||||||||||||| ||||| ||||
Sbjct: 504 ctcactccaaaaaattgtccaccttctgtggaaggctactggaggaaacggaggatgagc 563

                                                                       
Query: 362 ttgcggagtggataaaaacaagctcagcagaatccgggaacgtgagccaggccctttgcc 421
           |  | |||||||| ||||||| |||  ||||||| |   | || ||| ||||||||||  
Sbjct: 564 tctctgagtggatcaaaacaacctccacagaatcagaatatgtaagcaaggccctttgtg 623

                                
Query: 422 aggatattagcaaacactgcc 442
           | |||||||||||||||||||
Sbjct: 624 aagatattagcaaacactgcc 644
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>gb|BT018942.1| Zea mays clone Contig90.F mRNA sequence
          Length = 731

 Score =  256 bits (129), Expect = 8e-65
 Identities = 342/413 (82%)
 Strand = Plus / Plus

                                                                       
Query: 46  gagctagagattggaatctccagcgagaaaccaagaaatcacttggacttgcgtaaccgc 105
           ||||| |||||||||||||| || ||||| || |||||||||||||||||||| ||||||
Sbjct: 2   gagctggagattggaatctcgagtgagaagccgagaaatcacttggacttgcgcaaccgc 61

                                                                       
Query: 106 ttgaattcgaaaggtcagcgtgaagggaaggtcatcgactacagagtcagcgagcttcga 165
           || ||||| ||||| ||| | || |||||||||||||| || || ||||| |||||||| 
Sbjct: 62  ttaaattctaaaggccagagggaggggaaggtcatcgattatagggtcagtgagcttcgg 121

                                                                       
Query: 166 atcgtagagcttctggatgacctatgtgataagatgcaagactatacgttgcagaagtcg 225
            | || || |||||||||| |||||| |||||||||||||| ||||| ||  |||||| |
Sbjct: 122 gttgtggaacttctggatggcctatgcgataagatgcaagattataccttaaagaagttg 181

                                                                       
Query: 226 gaatcaggcgagaaagaatgggtgaaagtagcaaactggagcagttttcaaactgataag 285
           ||||||||||| || | |||||| |||||| || ||||||  || ||||||||||| || 
Sbjct: 182 gaatcaggcgaaaagggatgggttaaagtaacagactggaatagctttcaaactgaaaat 241

                                                                       
Query: 286 aaagctgcagcacgagcacactccaaaaatttatccagttactgtggaaggttactggag 345
           || || |||||| |||| |||||||||||  | ||||  | |||||||||| ||||||||
Sbjct: 242 aaggcagcagcaagagcgcactccaaaaaactgtccaccttctgtggaaggctactggag 301

                                                                       
Query: 346 gaaactgaggacgagcttgcggagtggataaaaacaagctcagcagaatccgggaacgtg 405
           ||||| ||||| |||||  | |||||||| |||||||||||  ||||||| |  || || 
Sbjct: 302 gaaacggaggatgagctctctgagtggatcaaaacaagctccacagaatcagaaaatgta 361

                                                                
Query: 406 agccaggccctttgccaggatattagcaaacactgccagtccacaagcgctac 458
           ||| ||||||||||  | ||||||||||||||||||   |||||||| |||||
Sbjct: 362 agcaaggccctttgtgaagatattagcaaacactgcggatccacaagtgctac 414
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score =  119 bits (60), Expect = 1e-23
 Identities = 75/80 (93%)
 Strand = Plus / Plus

                                                                          
Query: 70     gagaaaccaagaaatcacttggacttgcgtaaccgcttgaattcgaaaggtcagcgtgaa 129
              ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 901713 gagaaaccaagaaatcacttggacttgcgcaaccgcttaaattcaaaaggtcagcgtgaa 901772

                                  
Query: 130    gggaaggtcatcgactacag 149
              ||||||||||| || |||||
Sbjct: 901773 gggaaggtcattgattacag 901792



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                          
Query: 147    cagagtcagcgagcttcgaatcgtagagcttctggatgacctatgtgataagatgcaaga 206
              |||||| || ||||||||| | || ||||||||||||| |||||||||||||||||||||
Sbjct: 903736 cagagtaagtgagcttcgagttgttgagcttctggatggcctatgtgataagatgcaaga 903795

                              
Query: 207    ctatacgttgcagaag 222
               |||||  ||||||||
Sbjct: 903796 ttataccctgcagaag 903811



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                                
Query: 5      ccatcggcgacaagtgcgccgcctgcaaggccgt 38
              ||||||||||||||||||||||||||||||||||
Sbjct: 901116 ccatcggcgacaagtgcgccgcctgcaaggccgt 901149



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                     
Query: 283    aagaaagctgcagcacgagcacactccaaaaatttatcc 321
              ||||| || ||||||||||||||||||||||||||||||
Sbjct: 904563 aagaaggccgcagcacgagcacactccaaaaatttatcc 904601



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                      
Query: 225    ggaatcaggcgagaaagaatgggtgaaagtagcaaactggagcagttttcaaactg 280
              ||||||||| || |||| |||||||||||||||| | |||| ||||||| ||||||
Sbjct: 904017 ggaatcaggagaaaaaggatgggtgaaagtagcagattggaacagttttaaaactg 904072



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                          
Query: 367    gagtggataaaaacaagctcagcagaatccgggaacgtgagccaggccctttgccaggat 426
              |||||||||||||| ||||| |||||||| || || || |||   || |||||  | |||
Sbjct: 905336 gagtggataaaaacgagctccgcagaatcaggaaatgtcagcagagcactttgtgaagat 905395

                                        
Query: 427    attagcaaacactgccagtccacaag 452
              |||||||||||||| ||||| |||||
Sbjct: 905396 attagcaaacactgtcagtctacaag 905421



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 334    aggttactggaggaaactgagga 356
              |||||||||||||||||||||||
Sbjct: 905138 aggttactggaggaaactgagga 905160
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>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1442_E05
          Length = 162407

 Score =  119 bits (60), Expect = 1e-23
 Identities = 75/80 (93%)
 Strand = Plus / Plus

                                                                          
Query: 70     gagaaaccaagaaatcacttggacttgcgtaaccgcttgaattcgaaaggtcagcgtgaa 129
              ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 110921 gagaaaccaagaaatcacttggacttgcgcaaccgcttaaattcaaaaggtcagcgtgaa 110980

                                  
Query: 130    gggaaggtcatcgactacag 149
              ||||||||||| || |||||
Sbjct: 110981 gggaaggtcattgattacag 111000



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                          
Query: 147    cagagtcagcgagcttcgaatcgtagagcttctggatgacctatgtgataagatgcaaga 206
              |||||| || ||||||||| | || ||||||||||||| |||||||||||||||||||||
Sbjct: 112944 cagagtaagtgagcttcgagttgttgagcttctggatggcctatgtgataagatgcaaga 113003

                              
Query: 207    ctatacgttgcagaag 222
               |||||  ||||||||
Sbjct: 113004 ttataccctgcagaag 113019



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                                
Query: 5      ccatcggcgacaagtgcgccgcctgcaaggccgt 38
              ||||||||||||||||||||||||||||||||||
Sbjct: 110324 ccatcggcgacaagtgcgccgcctgcaaggccgt 110357



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                     
Query: 283    aagaaagctgcagcacgagcacactccaaaaatttatcc 321
              ||||| || ||||||||||||||||||||||||||||||
Sbjct: 113771 aagaaggccgcagcacgagcacactccaaaaatttatcc 113809



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                      
Query: 225    ggaatcaggcgagaaagaatgggtgaaagtagcaaactggagcagttttcaaactg 280
              ||||||||| || |||| |||||||||||||||| | |||| ||||||| ||||||
Sbjct: 113225 ggaatcaggagaaaaaggatgggtgaaagtagcagattggaacagttttaaaactg 113280



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                          
Query: 367    gagtggataaaaacaagctcagcagaatccgggaacgtgagccaggccctttgccaggat 426
              |||||||||||||| ||||| |||||||| || || || |||   || |||||  | |||
Sbjct: 114544 gagtggataaaaacgagctccgcagaatcaggaaatgtcagcagagcactttgtgaagat 114603

                                        
Query: 427    attagcaaacactgccagtccacaag 452
              |||||||||||||| ||||| |||||
Sbjct: 114604 attagcaaacactgtcagtctacaag 114629



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 334    aggttactggaggaaactgagga 356
              |||||||||||||||||||||||
Sbjct: 114346 aggttactggaggaaactgagga 114368
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>gb|AC126786.22| Medicago truncatula clone mth2-8c2, complete sequence
          Length = 115134

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 175    cttctggatgacctatgtgataagatgcaagacta 209
              ||||| |||||||| ||||| ||||||||||||||
Sbjct: 105870 cttcttgatgacctttgtgaaaagatgcaagacta 105836
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>gb|AC144482.11| Medicago truncatula clone mth2-10p1, complete sequence
          Length = 121112

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 175    cttctggatgacctatgtgataagatgcaagacta 209
              ||||| |||||||| ||||| ||||||||||||||
Sbjct: 114326 cttcttgatgacctttgtgaaaagatgcaagacta 114292
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>gb|AC011358.7| Homo sapiens chromosome 5 clone CTC-367D15, complete sequence
          Length = 201251

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 343    gaggaaactgaggacgagcttgc 365
              |||||||||||||||||||||||
Sbjct: 156252 gaggaaactgaggacgagcttgc 156274
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>gb|AC022440.7| Homo sapiens chromosome 5 clone RP11-20O22, complete sequence
          Length = 117353

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 343  gaggaaactgaggacgagcttgc 365
            |||||||||||||||||||||||
Sbjct: 8785 gaggaaactgaggacgagcttgc 8763
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>ref|NM_103436.1| Arabidopsis thaliana unknown protein AT1G42480 mRNA, complete cds
          Length = 785

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 109 aattcgaaaggtcagcgtgaagggaaggtcatcgactacaga 150
           ||||| ||||| ||||||||||| |||||||| || ||||||
Sbjct: 230 aattctaaaggccagcgtgaaggaaaggtcattgattacaga 271
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>dbj|AK054373.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330020M05
           product:unclassifiable, full insert sequence
          Length = 2065

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 243 atgggtgaaagtagcaaactggagca 268
           ||||||||||| ||||||||||||||
Sbjct: 685 atgggtgaaaggagcaaactggagca 660
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>emb|BX818143.1|CNS0AE8G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL63ZB02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 730

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 109 aattcgaaaggtcagcgtgaagggaaggtcatcgactacaga 150
           ||||| ||||| ||||||||||| |||||||| || ||||||
Sbjct: 189 aattctaaaggccagcgtgaaggaaaggtcattgattacaga 230
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>gb|AY088187.1| Arabidopsis thaliana clone 42677 mRNA, complete sequence
          Length = 785

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 109 aattcgaaaggtcagcgtgaagggaaggtcatcgactacaga 150
           ||||| ||||| ||||||||||| |||||||| || ||||||
Sbjct: 230 aattctaaaggccagcgtgaaggaaaggtcattgattacaga 271
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>dbj|AK175854.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-47-F10
          Length = 784

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 109 aattcgaaaggtcagcgtgaagggaaggtcatcgactacaga 150
           ||||| ||||| ||||||||||| |||||||| || ||||||
Sbjct: 221 aattctaaaggccagcgtgaaggaaaggtcattgattacaga 262
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>gb|AC107633.11| Mus musculus chromosome 12, clone RP23-7P3, complete sequence
          Length = 202640

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 243   atgggtgaaagtagcaaactggagca 268
             ||||||||||| ||||||||||||||
Sbjct: 77236 atgggtgaaaggagcaaactggagca 77211
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>gb|AC122460.4| Mus musculus BAC clone RP24-283I1 from chromosome 19, complete sequence
          Length = 173119

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 579    atgtgatattttagcatctgt 599
              |||||||||||||||||||||
Sbjct: 122121 atgtgatattttagcatctgt 122101
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>emb|AL354833.9| Human DNA sequence from clone RP11-157L14 on chromosome 13 Contains an
             olfactory receptor pseudogene,  a novel gene (RGC32), the
             3' end of a novel gene (contains KIAA0564 and FLJ21779)
             possible ortholog of RIKEN cDNA 1300010F03 gene, and 2 CpG
             islands, complete sequence
          Length = 158871

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 582   tgatattttagcatctgtgtttttg 606
             ||||||||||||||| |||||||||
Sbjct: 88187 tgatattttagcatcagtgtttttg 88163
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>emb|AL136379.19| Human DNA sequence from clone RP5-881P19 on chromosome 1q42.11-42.3
             Contains the WNT3A gene for wingless-type MMTV integration
             site family member 3A protein, a novel protein, the ARF1
             gene for ADP-ribosylation factor 1 protein, a C1orf35 gene
             for chromosome 1 open reading frame 35, the MRPL55 gene
             for  mitochondrial ribosomal protein L55, a novel
             processed pseudogene and six CpG islands, complete
             sequence
          Length = 127816

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 554   agagaagctacagtaggaaatgaac 578
             |||||||||||||||||||| ||||
Sbjct: 67335 agagaagctacagtaggaaaagaac 67311
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>gb|AC155101.19| Medicago truncatula clone mth2-139j13, complete sequence
          Length = 124152

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 571   aaatgaacatgtgatatttta 591
             |||||||||||||||||||||
Sbjct: 57568 aaatgaacatgtgatatttta 57588
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>gb|AC025815.10|AC025815 Arabidopsis thaliana chromosome 1 BAC T8D8 genomic sequence, complete
            sequence
          Length = 55021

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 109  aattcgaaaggtcagcgtgaagggaaggtcatcgactacag 149
            ||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 6087 aattctaaaggccagcgtgaaggaaaggtcattgattacag 6127
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>gb|AC004916.2|AC004916 Homo sapiens PAC clone RP5-891L14 from 7p22, complete sequence
          Length = 129014

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 554  agagaagctacagtaggaaatgaac 578
            |||||||||||||||||||| ||||
Sbjct: 2541 agagaagctacagtaggaaaagaac 2517
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>ref|XM_221315.3| PREDICTED: Rattus norvegicus similar to mKIAA0804 protein (predicted)
            (LOC287990), mRNA
          Length = 7740

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 396  cgggaacgtgagccaggccct 416
            |||||||||||||||||||||
Sbjct: 2244 cgggaacgtgagccaggccct 2264
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>dbj|AB007650.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA22
          Length = 65465

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 582   tgatattttagcatctgtgtttttggcac 610
             |||||||||| ||||| ||||||||||||
Sbjct: 30602 tgatattttatcatctttgtttttggcac 30574
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>dbj|AP000722.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-675M1, complete
              sequence
          Length = 177882

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 577    acatgtgatattttagcatct 597
              |||||||||||||||||||||
Sbjct: 138340 acatgtgatattttagcatct 138320
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>gb|AC151413.2| Mus musculus BAC clone RP23-103N6 from 19, complete sequence
          Length = 230420

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 579   atgtgatattttagcatctgt 599
             |||||||||||||||||||||
Sbjct: 32467 atgtgatattttagcatctgt 32447
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>gb|AC138300.8| Mus musculus chromosome 14, clone RP23-187B20, complete sequence
          Length = 213955

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    tccaaaaatttatccagtta 326
              ||||||||||||||||||||
Sbjct: 123316 tccaaaaatttatccagtta 123297
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>gb|AE013171.1| Thermoanaerobacter tengcongensis MB4, section 198 of 244 of the
            complete genome
          Length = 13771

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 306  ctccaaaaatttatccagtt 325
            ||||||||||||||||||||
Sbjct: 3209 ctccaaaaatttatccagtt 3228
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>gb|AC183271.3| Pan troglodytes BAC clone CH251-356H14 from chromosome 7, complete
            sequence
          Length = 183934

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 341  tggaggaaactgaggacgag 360
            ||||||||||||||||||||
Sbjct: 8642 tggaggaaactgaggacgag 8623
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>gb|AC117837.4| Mus musculus BAC clone RP24-196P11 from 10, complete sequence
          Length = 145990

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 567   taggaaatgaacatgtgatatttt 590
             ||||||||||| ||||||||||||
Sbjct: 37739 taggaaatgaaaatgtgatatttt 37716
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>gb|AC099681.4| Homo sapiens BAC clone RP11-310H4 from 7, complete sequence
          Length = 97787

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   tggaggaaactgaggacgag 360
             ||||||||||||||||||||
Sbjct: 47088 tggaggaaactgaggacgag 47069
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>gb|AC073193.10| Homo sapiens BAC clone RP11-175C14 from 7, complete sequence
          Length = 120436

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   tggaggaaactgaggacgag 360
             ||||||||||||||||||||
Sbjct: 24528 tggaggaaactgaggacgag 24509
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>gb|AC117671.8| Mus musculus chromosome 10, clone RP23-389G8, complete sequence
          Length = 189341

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 567   taggaaatgaacatgtgatatttt 590
             ||||||||||| ||||||||||||
Sbjct: 68514 taggaaatgaaaatgtgatatttt 68537
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>gb|AC144511.1| Pan troglodytes BAC clone RP43-45C15 from 7, complete sequence
          Length = 153510

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   tggaggaaactgaggacgag 360
             ||||||||||||||||||||
Sbjct: 99402 tggaggaaactgaggacgag 99383
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>emb|BX571660.1| Wolinella succinogenes, complete genome; segment 4/7
          Length = 349926

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 40     gcggctgagctagagattggaatc 63
              |||| |||||||||||||||||||
Sbjct: 291116 gcggatgagctagagattggaatc 291093
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>emb|AJ628943.1| Leishmania infantum cpb gene for cathepsin L-like cysteine proteinase
            and partial ORF
          Length = 6462

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 157  gagcttcgaatcgtagagcttctg 180
            ||||||||| ||||||||||||||
Sbjct: 4608 gagcttcgactcgtagagcttctg 4585
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>gb|AC153363.4| Mus musculus BAC clone RP23-5I6 from chromosome 9, complete sequence
          Length = 185444

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 508    tattggacaaagcaaacacagatg 531
              ||||||||||||||||| ||||||
Sbjct: 153264 tattggacaaagcaaactcagatg 153241
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>gb|AC154549.2| Mus musculus BAC clone RP23-443L15 from chromosome 17, complete sequence
          Length = 191523

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 570    gaaatgaacatgtgatattt 589
              ||||||||||||||||||||
Sbjct: 171119 gaaatgaacatgtgatattt 171138
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>gb|AC154676.2| Mus musculus BAC clone RP23-146O19 from 17, complete sequence
          Length = 180352

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 570    gaaatgaacatgtgatattt 589
              ||||||||||||||||||||
Sbjct: 102767 gaaatgaacatgtgatattt 102786
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>gb|AC126669.4| Mus musculus BAC clone RP24-457D15 from 9, complete sequence
          Length = 180081

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 508   tattggacaaagcaaacacagatg 531
             ||||||||||||||||| ||||||
Sbjct: 74344 tattggacaaagcaaactcagatg 74321
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>emb|AL807377.10| Zebrafish DNA sequence from clone CH211-229G3, complete sequence
          Length = 170231

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  agcacactccaaaaatttat 319
            ||||||||||||||||||||
Sbjct: 5739 agcacactccaaaaatttat 5758
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>gb|AC148016.3| Mus musculus BAC clone RP23-71B24 from 19, complete sequence
          Length = 227795

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   aaactgataagaaagctgca 294
             ||||||||||||||||||||
Sbjct: 58218 aaactgataagaaagctgca 58237
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>gb|AC131902.6| Homo sapiens chromosome 8, clone RP11-1081M5, complete sequence
          Length = 130200

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 547   tcaaggaagagaagctacag 566
             ||||||||||||||||||||
Sbjct: 78966 tcaaggaagagaagctacag 78947
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>gb|AC087587.14| Homo sapiens 12 BAC CTC-465D4 (CalTech Human BAC Library C) complete
              sequence
          Length = 198842

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 594    atctgtgtttttggcactca 613
              ||||||||||||||||||||
Sbjct: 185736 atctgtgtttttggcactca 185717


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,668,868
Number of Sequences: 3902068
Number of extensions: 5668868
Number of successful extensions: 105160
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105015
Number of HSP's gapped (non-prelim): 143
length of query: 651
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 628
effective length of database: 17,143,297,704
effective search space: 10765990958112
effective search space used: 10765990958112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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