Clone Name	bags37d02
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	dbj|AK070943.1| Oryza sativa (japonica cultivar-group) cDNA clon...	396	e-107
2	gb|AY104237.1| Zea mays PCO104743 mRNA sequence	375	e-101
3	dbj|AK121807.1| Oryza sativa (japonica cultivar-group) cDNA clon...	323	3e-85
4	ref|XM_477993.1| Oryza sativa (japonica cultivar-group), mRNA	317	2e-83
5	ref|NM_124573.1| Arabidopsis thaliana DNA binding / DNA-directed...	123	6e-25
6	gb|AY063088.1| Arabidopsis thaliana putative DNA-directed RNA po...	123	6e-25
7	gb|AF370301.1| Arabidopsis thaliana putative DNA-directed RNA po...	123	6e-25
8	gb|AY088602.1| Arabidopsis thaliana clone 8268 mRNA, complete se...	123	6e-25
9	ref|NM_126492.2| Arabidopsis thaliana DNA binding / DNA-directed...	119	9e-24
10	gb|BT010184.1| Arabidopsis thaliana At2g04630 gene, complete cds	119	9e-24
11	ref|NM_188966.1| Oryza sativa (japonica cultivar-group), mRNA	109	8e-21
12	gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom...	100	8e-18
13	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	100	8e-18
14	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	100	8e-18
15	dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...	96	1e-16
16	dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic D...	96	1e-16
17	gb|AF153278.1|AF153278 Nicotiana tabacum DNA-directed RNA polyme...	82	2e-12
18	ref|XM_477992.1| Oryza sativa (japonica cultivar-group), mRNA	76	1e-10
19	gb|AF153277.1|AF153277 Nicotiana tabacum DNA-directed RNA polyme...	74	5e-10
20	gb|AC006955.6| Arabidopsis thaliana chromosome 2 clone F28I8 map...	68	3e-08
21	dbj|AB015478.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...	68	3e-08
22	dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...	66	1e-07
23	dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic D...	66	1e-07
24	gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence	64	4e-07
25	gb|AC023489.8| Trypanosoma brucei chromosome 4 clone RPCI93-26G5...	64	4e-07
26	gb|BT014606.1| Lycopersicon esculentum clone 134086R, mRNA sequence	64	4e-07
27	ref|XM_820271.1| Trypanosoma brucei TREU927 clone RPCI93-26G5 DN...	64	4e-07
28	ref|XM_820269.1| Trypanosoma brucei TREU927 clone RPCI93-26G5 DN...	64	4e-07
29	emb|AM167553.1| Trypanosoma brucei brucei mRNA for RNA polymeras...	64	4e-07
30	ref|XM_798051.1| Trypanosoma cruzi strain CL Brener DNA-directed...	60	7e-06
31	ref|XM_801182.1| Trypanosoma cruzi strain CL Brener DNA-directed...	60	7e-06
32	ref|XM_802949.1| Trypanosoma cruzi strain CL Brener DNA-directed...	60	7e-06
33	ref|XM_802952.1| Trypanosoma cruzi strain CL Brener DNA-directed...	60	7e-06
34	ref|XM_802954.1| Trypanosoma cruzi strain CL Brener DNA-directed...	60	7e-06
35	ref|XM_807299.1| Trypanosoma cruzi strain CL Brener DNA-directed...	60	7e-06
36	ref|XM_807301.1| Trypanosoma cruzi strain CL Brener DNA-directed...	60	7e-06
37	ref|XM_386859.1| Gibberella zeae PH-1 chromosome 4 hypothetical ...	52	0.002
38	gb|DQ215323.1| Taeniopygia guttata clone 0058P0006G06 DNA direct...	48	0.027
39	gb|DQ215322.1| Taeniopygia guttata clone 0058P0019A05 DNA direct...	48	0.027
40	gb|AY391257.1| Tetrahymena bergeri heat shock protein 90 gene, p...	48	0.027
41	ref|XM_416631.1| PREDICTED: Gallus gallus similar to MGC53544 pr...	46	0.11
42	ref|XM_706954.1| Candida albicans SC5314 RNA polymerase I, II an...	46	0.11
43	ref|XM_706933.1| Candida albicans SC5314 putative subunit common...	46	0.11
44	gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	44	0.42
45	ref|NM_209934.1| Eremothecium gossypii AEL279Cp (AEL279C), mRNA	44	0.42
46	emb|AL354668.13| Human DNA sequence from clone RP11-506P24 on ch...	42	1.6
47	gb|DQ455231.1| Medicago truncatula cDNA-AFLP fragment BC43M13_16...	42	1.6
48	emb|AJ251211.1|GGA251211 Gallus gallus mRNA for RNA polymerase c...	42	1.6
49	ref|NM_204734.1| Gallus gallus polymerase (RNA) II (DNA directed...	42	1.6
50	dbj|AP001578.3| Homo sapiens genomic DNA, chromosome 6q25.2, clo...	42	1.6
51	gb|AC159257.2| Mus musculus BAC clone RP24-86H20 from chromosome...	40	6.5
52	ref|XM_420148.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ...	40	6.5
53	gb|AC122018.4| Mus musculus BAC clone RP24-361O20 from chromosom...	40	6.5
54	emb|CR702791.2|CNS0G583 Tetraodon nigroviridis full-length cDNA	40	6.5
55	emb|CR689276.2|CNS0FUSO Tetraodon nigroviridis full-length cDNA	40	6.5
56	emb|CR682388.2|CNS0FPHC Tetraodon nigroviridis full-length cDNA	40	6.5
57	emb|Z93931.1|HS438G17 Human DNA sequence from clone RP3-438G17 o...	40	6.5
58	emb|AL392086.14| Human DNA sequence from clone RP11-799O21 on ch...	40	6.5
59	gb|DQ443743.1| Transmissible gastroenteritis virus strain SC-Y, ...	40	6.5
60	emb|AJ271965.2|TGA271965 Transmissible gastroenteritis virus com...	40	6.5
61	emb|CR749748.11| Zebrafish DNA sequence from clone DKEY-246E1 in...	40	6.5
62	gb|AC115889.13| Mus musculus chromosome 3, clone RP24-409N2, com...	40	6.5
63	gb|AC157588.8| Mus musculus BAC clone RP24-95J4 from chromosome ...	40	6.5
64	dbj|AB254449.1| Phragmites australis PhaHAK2-e mRNA for potassiu...	40	6.5
65	dbj|AB254448.1| Phragmites australis PhaHAK2-n mRNA for potassiu...	40	6.5
66	dbj|AB254447.1| Phragmites australis PhaHAK2-u mRNA for potassiu...	40	6.5
67	gb|AC092995.7| Homo sapiens 3 BAC RP11-692L6 (Roswell Park Cance...	40	6.5
68	dbj|AB229799.1| Aspergillus oryzae cDNA, contig sequence: AoEST6683	40	6.5
69	dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003	40	6.5
70	gb|AC115111.2| Homo sapiens BAC clone RP11-286J9 from 4, complet...	40	6.5
71	gb|DQ390461.1| Transmissible gastroenteritis virus isolate SC-Y ...	40	6.5
72	emb|BX088704.7| Zebrafish DNA sequence from clone CH211-208M6 in...	40	6.5
73	gb|AC114533.17| Mus musculus chromosome 1, clone RP24-255G23, co...	40	6.5
74	emb|Z34093.1|TGVPOLL Transmissible gastroenteritis virus (Purdue...	40	6.5
75	gb|AC114618.9| Mus musculus chromosome 3, clone RP24-86C15, comp...	40	6.5
76	gb|AC099702.12| Mus musculus chromosome 1, clone RP23-218F13, co...	40	6.5
77	emb|AL133477.16| Human DNA sequence from clone RP11-172F4 on chr...	40	6.5
78	emb|AL772255.12| Mouse DNA sequence from clone RP23-172B16 on ch...	40	6.5
79	gb|M26939.1|HUMCOL3A1A Human collagen type-III (COL3A1) gene, 5'...	40	6.5
80	emb|AL627347.10| Mouse DNA sequence from clone RP23-120A10 on ch...	40	6.5

---

>dbj|AK070943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067P18, full
           insert sequence
          Length = 990

 Score =  396 bits (200), Expect = e-107
 Identities = 354/407 (86%)
 Strand = Plus / Plus

                                                                       
Query: 42  ggcggcgggagccatggcggacgacgattacaatgaagttgacatggggtatgaggatga 101
           |||||||| |||||||||||||||||| ||||| ||  | ||||||||||||||||||||
Sbjct: 90  ggcggcggaagccatggcggacgacgactacaacgacatggacatggggtatgaggatga 149

                                                                       
Query: 102 gcctccagaagctgatattgaggaaggggttgaagaagatcctgagaacaatgaggatgc 161
           ||| |||||| |||| ||||||||||||| |||||| || |||||||| || ||||||| 
Sbjct: 150 gccaccagaacctgagattgaggaaggggctgaagaggaacctgagaataacgaggatgg 209

                                                                       
Query: 162 ccctgatgatgtggtagggggtgaaggtgaagaaaaggaacaggaaaagactgcccgtcc 221
           ||||||||| || |||||||  || | |||||| |||||||| ||||| |||   || ||
Sbjct: 210 ccctgatgaggttgtaggggcagaggctgaagataaggaacaagaaaaaactcagcgccc 269

                                                                       
Query: 222 acgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatccttggcacacgtgc 281
           |||||| ||  |||| |||||||| || |||||||| || |||||||| || ||||||||
Sbjct: 270 acgcaaaacgtcaaagtatatgacaaagtatgagcgtgcccgcatcctgggtacacgtgc 329

                                                                       
Query: 282 tttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgatcctct 341
            || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 330 attacagataagcatgaatgctccagttatggttgagcttgagggagaaactgatcctct 389

                                                                       
Query: 342 tgagattgccattaaagaactgagagcacgcaagatccccttcacgattaggcggtactt 401
           |||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 390 tgagattgccatgaaagagctgagagcacgcaagatcccattcacaattaggcggtactt 449

                                                          
Query: 402 acctgatggaagctatgangactgnggagtnnacnagctcattgtgg 448
           |||||| ||||||||||| ||||| || ||  || |||| |||||||
Sbjct: 450 acctgacggaagctatgaggactggggcgttgacgagcttattgtgg 496

---

>gb|AY104237.1| Zea mays PCO104743 mRNA sequence
          Length = 1061

 Score =  375 bits (189), Expect = e-101
 Identities = 346/400 (86%)
 Strand = Plus / Plus

                                                                       
Query: 49  ggagccatggcggacgacgattacaatgaagttgacatggggtatgaggatgagcctcca 108
           |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||
Sbjct: 99  ggagccatggcggacgacgattacaacgaaattgacatggggtatgaggatgagccccca 158

                                                                       
Query: 109 gaagctgatattgaggaaggggttgaagaagatcctgagaacaatgaggatgcccctgat 168
           ||| | || ||||||||||| | ||||||||| ||||||||||| || ||||||||||||
Sbjct: 159 gaaccggagattgaggaaggagctgaagaagagcctgagaacaacgaagatgcccctgat 218

                                                                       
Query: 169 gatgtggtagggggtgaaggtgaagaaaaggaacaggaaaagactgcccgtccacgcaat 228
           || ||  |||| ||||| |||||||| |||||||||||||||||    |||  |||||| 
Sbjct: 219 gacgtcataggtggtgagggtgaagataaggaacaggaaaagaccaagcgtgaacgcaaa 278

                                                                       
Query: 229 acaacaaaatatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcag 288
           ||||||||||| ||||| || || || || || ||||| ||||| ||||| || ||||||
Sbjct: 279 acaacaaaatacatgacgaagtacgaacgtgcgcgcattcttggtacacgagccttgcag 338

                                                                       
Query: 289 ataagcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgagatt 348
           |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 339 ataagcatgaatgctccagtcatggttgagcttgagggagaaactgaccctcttgagatt 398

                                                                       
Query: 349 gccattaaagaactgagagcacgcaagatccccttcacgattaggcggtacttacctgat 408
           || || || || || ||||| |||||||| ||||||||||| || |||||| ||||||||
Sbjct: 399 gcgatgaaggagcttagagcgcgcaagatacccttcacgatcagacggtacctacctgat 458

                                                   
Query: 409 ggaagctatgangactgnggagtnnacnagctcattgtgg 448
           ||||| ||||| ||||| |||||  || ||||||||||||
Sbjct: 459 ggaagttatgaagactggggagtagacgagctcattgtgg 498

---

>dbj|AK121807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097N04, full
           insert sequence
          Length = 758

 Score =  323 bits (163), Expect = 3e-85
 Identities = 339/398 (85%), Gaps = 6/398 (1%)
 Strand = Plus / Plus

                                                                       
Query: 52  gccatggcggacgacgattacaatgaagttgacatggggtatgaggatgagcctccagaa 111
           ||||||||||| ||||| ||||| ||  | ||||||||||| ||||||||||| ||||||
Sbjct: 113 gccatggcggaggacgactacaacgacatggacatggggtacgaggatgagcccccagaa 172

                                                                       
Query: 112 gctgatattgaggaaggggttgaagaagatcctgagaa---caatgaggatgcccctgat 168
            |||| ||||||||||| | ||| ||||| ||||||||   ||||||||||||    |||
Sbjct: 173 cctgagattgaggaaggagctgaggaagagcctgagaataacaatgaggatgctgtggat 232

                                                                       
Query: 169 gatgtggtagggggtgaaggtgaagaaaaggaacaggaaaagactgcccgtccacgcaat 228
           |||||||| |||| ||||| |||    ||||| ||||||||||| || |||||||| || 
Sbjct: 233 gatgtggttggggctgaagatgac---aaggagcaggaaaagacggctcgtccacggaaa 289

                                                                       
Query: 229 acaacaaaatatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcag 288
           ||| |||| |||||||| ||||| ||||| |||||||| ||||| |||||||| ||||||
Sbjct: 290 acatcaaagtatatgacaaaatacgagcgtgcacgcattcttggtacacgtgccttgcag 349

                                                                       
Query: 289 ataagcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgagatt 348
           ||||||||||||||||| |||||||| |||||||| || || |||||||| |||||||||
Sbjct: 350 ataagcatgaatgctcctgttatggtcgagcttgaaggggagactgatccacttgagatt 409

                                                                       
Query: 349 gccattaaagaactgagagcacgcaagatccccttcacgattaggcggtacttacctgat 408
           ||||| |||||| ||||||||||||||||||| ||||| || |||||||| |||||||||
Sbjct: 410 gccatgaaagaattgagagcacgcaagatccctttcacaatcaggcggtatttacctgat 469

                                                 
Query: 409 ggaagctatgangactgnggagtnnacnagctcattgt 446
           ||||||||||| ||||| |||||  |  ||||||||||
Sbjct: 470 ggaagctatgaggactggggagttgatgagctcattgt 507

---

>ref|XM_477993.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 429

 Score =  317 bits (160), Expect = 2e-83
 Identities = 336/395 (85%), Gaps = 6/395 (1%)
 Strand = Plus / Plus

                                                                       
Query: 55  atggcggacgacgattacaatgaagttgacatggggtatgaggatgagcctccagaagct 114
           |||||||| ||||| ||||| ||  | ||||||||||| ||||||||||| |||||| ||
Sbjct: 1   atggcggaggacgactacaacgacatggacatggggtacgaggatgagcccccagaacct 60

                                                                       
Query: 115 gatattgaggaaggggttgaagaagatcctgagaa---caatgaggatgcccctgatgat 171
           || ||||||||||| | ||| ||||| ||||||||   ||||||||||||    ||||||
Sbjct: 61  gagattgaggaaggagctgaggaagagcctgagaataacaatgaggatgctgtggatgat 120

                                                                       
Query: 172 gtggtagggggtgaaggtgaagaaaaggaacaggaaaagactgcccgtccacgcaataca 231
           ||||| |||| ||||| |||    ||||| ||||||||||| || |||||||| || |||
Sbjct: 121 gtggttggggctgaagatgac---aaggagcaggaaaagacggctcgtccacggaaaaca 177

                                                                       
Query: 232 acaaaatatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagata 291
            |||| |||||||| ||||| ||||| |||||||| ||||| |||||||| |||||||||
Sbjct: 178 tcaaagtatatgacaaaatacgagcgtgcacgcattcttggtacacgtgccttgcagata 237

                                                                       
Query: 292 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgcc 351
           |||||||||||||| |||||||| |||||||| || || |||||||| ||||||||||||
Sbjct: 238 agcatgaatgctcctgttatggtcgagcttgaaggggagactgatccacttgagattgcc 297

                                                                       
Query: 352 attaaagaactgagagcacgcaagatccccttcacgattaggcggtacttacctgatgga 411
           || |||||| ||||||||||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 298 atgaaagaattgagagcacgcaagatccctttcacaatcaggcggtatttacctgatgga 357

                                              
Query: 412 agctatgangactgnggagtnnacnagctcattgt 446
           |||||||| ||||| |||||  |  ||||||||||
Sbjct: 358 agctatgaggactggggagttgatgagctcattgt 392

---

>ref|NM_124573.1| Arabidopsis thaliana DNA binding / DNA-directed RNA polymerase
           AT5G51940 mRNA, complete cds
          Length = 662

 Score =  123 bits (62), Expect = 6e-25
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                       
Query: 217 cgtccacgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatccttggcaca 276
           ||||||||||| ||  |||| | ||||||||| |||||||| || || ||||| ||||| 
Sbjct: 261 cgtccacgcaaaacgtcaaagtttatgaccaagtatgagcgtgctcgtatcctcggcact 320

                                                                       
Query: 277 cgtgctttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgat 336
           || ||||||||||| |||||||||||||| || ||||||||||| |||||||| ||||||
Sbjct: 321 cgcgctttgcagattagcatgaatgctcctgtcatggttgagctagagggtgagactgat 380

                         
Query: 337 cctcttgagattgc 350
           || |||||||||||
Sbjct: 381 ccacttgagattgc 394

---

>gb|AY063088.1| Arabidopsis thaliana putative DNA-directed RNA polymerase II
           subunit (At5g51940) mRNA, complete cds
          Length = 466

 Score =  123 bits (62), Expect = 6e-25
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                       
Query: 217 cgtccacgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatccttggcaca 276
           ||||||||||| ||  |||| | ||||||||| |||||||| || || ||||| ||||| 
Sbjct: 169 cgtccacgcaaaacgtcaaagtttatgaccaagtatgagcgtgctcgtatcctcggcact 228

                                                                       
Query: 277 cgtgctttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgat 336
           || ||||||||||| |||||||||||||| || ||||||||||| |||||||| ||||||
Sbjct: 229 cgcgctttgcagattagcatgaatgctcctgtcatggttgagctagagggtgagactgat 288

                         
Query: 337 cctcttgagattgc 350
           || |||||||||||
Sbjct: 289 ccacttgagattgc 302

---

>gb|AF370301.1| Arabidopsis thaliana putative DNA-directed RNA polymerase II
           subunit (At5g51940) mRNA, complete cds
          Length = 650

 Score =  123 bits (62), Expect = 6e-25
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                       
Query: 217 cgtccacgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatccttggcaca 276
           ||||||||||| ||  |||| | ||||||||| |||||||| || || ||||| ||||| 
Sbjct: 256 cgtccacgcaaaacgtcaaagtttatgaccaagtatgagcgtgctcgtatcctcggcact 315

                                                                       
Query: 277 cgtgctttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgat 336
           || ||||||||||| |||||||||||||| || ||||||||||| |||||||| ||||||
Sbjct: 316 cgcgctttgcagattagcatgaatgctcctgtcatggttgagctagagggtgagactgat 375

                         
Query: 337 cctcttgagattgc 350
           || |||||||||||
Sbjct: 376 ccacttgagattgc 389

---

>gb|AY088602.1| Arabidopsis thaliana clone 8268 mRNA, complete sequence
          Length = 663

 Score =  123 bits (62), Expect = 6e-25
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                       
Query: 217 cgtccacgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatccttggcaca 276
           ||||||||||| ||  |||| | ||||||||| |||||||| || || ||||| ||||| 
Sbjct: 262 cgtccacgcaaaacgtcaaagtttatgaccaagtatgagcgtgctcgtatcctcggcact 321

                                                                       
Query: 277 cgtgctttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgat 336
           || ||||||||||| |||||||||||||| || ||||||||||| |||||||| ||||||
Sbjct: 322 cgcgctttgcagattagcatgaatgctcctgtcatggttgagctagagggtgagactgat 381

                         
Query: 337 cctcttgagattgc 350
           || |||||||||||
Sbjct: 382 ccacttgagattgc 395

---

>ref|NM_126492.2| Arabidopsis thaliana DNA binding / DNA-directed RNA polymerase
           AT2G04630 mRNA, complete cds
          Length = 732

 Score =  119 bits (60), Expect = 9e-24
 Identities = 105/120 (87%)
 Strand = Plus / Plus

                                                                       
Query: 240 tatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 299
           |||||| || ||||| || ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 257 tatgactaagtatgaacgtgcacgtatcctcggcactcgtgctttgcagattagcatgaa 316

                                                                       
Query: 300 tgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgccattaaaga 359
           |||||| |||||||||||| | |||||||| |||||||| ||||||||||| || |||||
Sbjct: 317 tgctcctgttatggttgagttggagggtgagactgatccacttgagattgcgatgaaaga 376



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 46/53 (86%), Gaps = 3/53 (5%)
 Strand = Plus / Plus

                                                                
Query: 55  atggcggacgacgattacaatgaagt---tgacatggggtatgaggatgagcc 104
           ||||| ||||||||||||||||||||   |||| |||| ||||| ||||||||
Sbjct: 66  atggctgacgacgattacaatgaagtcgatgacttgggatatgaagatgagcc 118

---

>gb|BT010184.1| Arabidopsis thaliana At2g04630 gene, complete cds
          Length = 435

 Score =  119 bits (60), Expect = 9e-24
 Identities = 105/120 (87%)
 Strand = Plus / Plus

                                                                       
Query: 240 tatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 299
           |||||| || ||||| || ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 192 tatgactaagtatgaacgtgcacgtatcctcggcactcgtgctttgcagattagcatgaa 251

                                                                       
Query: 300 tgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgccattaaaga 359
           |||||| |||||||||||| | |||||||| |||||||| ||||||||||| || |||||
Sbjct: 252 tgctcctgttatggttgagttggagggtgagactgatccacttgagattgcgatgaaaga 311



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 46/53 (86%), Gaps = 3/53 (5%)
 Strand = Plus / Plus

                                                                
Query: 55  atggcggacgacgattacaatgaagt---tgacatggggtatgaggatgagcc 104
           ||||| ||||||||||||||||||||   |||| |||| ||||| ||||||||
Sbjct: 1   atggctgacgacgattacaatgaagtcgatgacttgggatatgaagatgagcc 53

---

>ref|NM_188966.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 861

 Score =  109 bits (55), Expect = 8e-21
 Identities = 82/91 (90%)
 Strand = Plus / Plus

                                                                       
Query: 233 caaaatatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataa 292
           |||| |||||||| ||||| ||||| |||||||||||| | |||||||| ||||||||||
Sbjct: 263 caaagtatatgacaaaatacgagcgtgcacgcatccttagtacacgtgccttgcagataa 322

                                          
Query: 293 gcatgaatgctccagttatggttgagcttga 323
           ||||||||||||| |||||||| ||||||||
Sbjct: 323 gcatgaatgctcctgttatggtcgagcttga 353



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                       
Query: 55  atggcggacgacgattacaatgaagttgacatggggtatgaggatgagcctccagaagct 114
           |||||||| ||||| ||||| ||  | || |||||||| ||||||||||| |||||| ||
Sbjct: 1   atggcggaggacgactacaacgacatggatatggggtacgaggatgagcccccagaacct 60

                     
Query: 115 gatattgagg 124
           || |||||||
Sbjct: 61  gagattgagg 70

---

>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
              sequence
          Length = 190055

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 53/54 (98%)
 Strand = Plus / Minus

                                                                    
Query: 292    agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 345
              ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 140195 agcatgaatgctccagttatggttgagcttgagggagaaactgatcctcttgag 140142



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                          
Query: 344    agattgccattaaagaactgagagcacgcaagatccccttcacgattaggcggtacttac 403
              |||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 138783 agattgccatgaaagagctgagagcacgcaagatcccattcacaattaggcggtacttac 138724

                        
Query: 404    ctgatggaag 413
              |||| |||||
Sbjct: 138723 ctgacggaag 138714



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 42     ggcggcgggagccatggcggacgacgattacaatgaagttgacatggggt 91
              |||||||| |||||||||||||||||| ||||| ||  | ||||||||||
Sbjct: 141920 ggcggcggaagccatggcggacgacgactacaacgacatggacatggggt 141871



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 89     ggtatgaggatgagcctccagaagctgatattgagg 124
              |||||||||||||||| |||||| |||| |||||||
Sbjct: 140568 ggtatgaggatgagccaccagaacctgagattgagg 140533

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 53/54 (98%)
 Strand = Plus / Minus

                                                                      
Query: 292      agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 345
                ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 21447284 agcatgaatgctccagttatggttgagcttgagggagaaactgatcctcttgag 21447231



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                            
Query: 344      agattgccattaaagaactgagagcacgcaagatccccttcacgattaggcggtacttac 403
                |||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 21445872 agattgccatgaaagagctgagagcacgcaagatcccattcacaattaggcggtacttac 21445813

                          
Query: 404      ctgatggaag 413
                |||| |||||
Sbjct: 21445812 ctgacggaag 21445803



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 42       ggcggcgggagccatggcggacgacgattacaatgaagttgacatggggt 91
                |||||||| |||||||||||||||||| ||||| ||  | ||||||||||
Sbjct: 21449009 ggcggcggaagccatggcggacgacgactacaacgacatggacatggggt 21448960



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 89       ggtatgaggatgagcctccagaagctgatattgagg 124
                |||||||||||||||| |||||| |||| |||||||
Sbjct: 21447657 ggtatgaggatgagccaccagaacctgagattgagg 21447622

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 53/54 (98%)
 Strand = Plus / Minus

                                                                      
Query: 292      agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 345
                ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 21440313 agcatgaatgctccagttatggttgagcttgagggagaaactgatcctcttgag 21440260



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                            
Query: 344      agattgccattaaagaactgagagcacgcaagatccccttcacgattaggcggtacttac 403
                |||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 21438901 agattgccatgaaagagctgagagcacgcaagatcccattcacaattaggcggtacttac 21438842

                          
Query: 404      ctgatggaag 413
                |||| |||||
Sbjct: 21438841 ctgacggaag 21438832



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 42       ggcggcgggagccatggcggacgacgattacaatgaagttgacatggggt 91
                |||||||| |||||||||||||||||| ||||| ||  | ||||||||||
Sbjct: 21442038 ggcggcggaagccatggcggacgacgactacaacgacatggacatggggt 21441989



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 89       ggtatgaggatgagcctccagaagctgatattgagg 124
                |||||||||||||||| |||||| |||| |||||||
Sbjct: 21440686 ggtatgaggatgagccaccagaacctgagattgagg 21440651

---

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 122/146 (83%), Gaps = 3/146 (2%)
 Strand = Plus / Minus

                                                                            
Query: 148      aacaatgaggatgcccctgatgatgtggtagggggtgaaggtgaagaaaaggaacaggaa 207
                ||||||||||||||    ||||||||||| |||| ||||| |||    ||||| ||||||
Sbjct: 16238499 aacaatgaggatgctgtggatgatgtggttggggctgaagatgac---aaggagcaggaa 16238443

                                                                            
Query: 208      aagactgcccgtccacgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatc 267
                ||||| || |||||||| || ||| |||| |||||||| ||||| ||||| |||||||| 
Sbjct: 16238442 aagacggctcgtccacggaaaacatcaaagtatatgacaaaatacgagcgtgcacgcatt 16238383

                                          
Query: 268      cttggcacacgtgctttgcagataag 293
                ||||| |||||||| |||||||||||
Sbjct: 16238382 cttggtacacgtgccttgcagataag 16238357



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                            
Query: 344      agattgccattaaagaactgagagcacgcaagatccccttcacgattaggcggtacttac 403
                |||||||||| |||||| ||||||||||||||||||| ||||| || |||||||| ||||
Sbjct: 16236891 agattgccatgaaagaattgagagcacgcaagatccctttcacaatcaggcggtatttac 16236832

                          
Query: 404      ctgatggaag 413
                ||||||||||
Sbjct: 16236831 ctgatggaag 16236822



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                      
Query: 292      agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 345
                |||||||||||||| |||||||| |||||||| || || |||||||| ||||||
Sbjct: 16238265 agcatgaatgctcctgttatggtcgagcttgaaggggagactgatccacttgag 16238212



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                        
Query: 238      tatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataag 293
                |||||||| ||||| ||||| |||||||||||||| |||| ||| |||||||||||
Sbjct: 16222537 tatatgacaaaatacgagcgtgcacgcatccttggtacac-tgccttgcagataag 16222483



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 292      agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 345
                |||||||||||||  |||||||| |||||||| || || |||||||| ||||||
Sbjct: 16222400 agcatgaatgctcttgttatggtcgagcttgatggggagactgatccacttgag 16222347



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 292      agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 345
                |||||||||||||  |||||||| |||||||| || || |||||||| ||||||
Sbjct: 16221988 agcatgaatgctcttgttatggtcgagcttgatggggagactgatccacttgag 16221935



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 89       ggtatgaggatgagcctccagaagctgatattgagg 124
                |||| ||||||||||| |||||| |||| |||||||
Sbjct: 16238645 ggtacgaggatgagcccccagaacctgagattgagg 16238610

---

>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1634_H04
          Length = 151699

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 122/146 (83%), Gaps = 3/146 (2%)
 Strand = Plus / Minus

                                                                         
Query: 148   aacaatgaggatgcccctgatgatgtggtagggggtgaaggtgaagaaaaggaacaggaa 207
             ||||||||||||||    ||||||||||| |||| ||||| |||    ||||| ||||||
Sbjct: 58937 aacaatgaggatgctgtggatgatgtggttggggctgaagatgac---aaggagcaggaa 58881

                                                                         
Query: 208   aagactgcccgtccacgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatc 267
             ||||| || |||||||| || ||| |||| |||||||| ||||| ||||| |||||||| 
Sbjct: 58880 aagacggctcgtccacggaaaacatcaaagtatatgacaaaatacgagcgtgcacgcatt 58821

                                       
Query: 268   cttggcacacgtgctttgcagataag 293
             ||||| |||||||| |||||||||||
Sbjct: 58820 cttggtacacgtgccttgcagataag 58795



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                         
Query: 344   agattgccattaaagaactgagagcacgcaagatccccttcacgattaggcggtacttac 403
             |||||||||| |||||| ||||||||||||||||||| ||||| || |||||||| ||||
Sbjct: 57329 agattgccatgaaagaattgagagcacgcaagatccctttcacaatcaggcggtatttac 57270

                       
Query: 404   ctgatggaag 413
             ||||||||||
Sbjct: 57269 ctgatggaag 57260



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                   
Query: 292   agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 345
             |||||||||||||| |||||||| |||||||| || || |||||||| ||||||
Sbjct: 58703 agcatgaatgctcctgttatggtcgagcttgaaggggagactgatccacttgag 58650



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                     
Query: 238   tatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataag 293
             |||||||| ||||| ||||| |||||||||||||| |||| ||| |||||||||||
Sbjct: 42975 tatatgacaaaatacgagcgtgcacgcatccttggtacac-tgccttgcagataag 42921



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 292   agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 345
             |||||||||||||  |||||||| |||||||| || || |||||||| ||||||
Sbjct: 42838 agcatgaatgctcttgttatggtcgagcttgatggggagactgatccacttgag 42785



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 292   agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 345
             |||||||||||||  |||||||| |||||||| || || |||||||| ||||||
Sbjct: 42426 agcatgaatgctcttgttatggtcgagcttgatggggagactgatccacttgag 42373



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 89    ggtatgaggatgagcctccagaagctgatattgagg 124
             |||| ||||||||||| |||||| |||| |||||||
Sbjct: 59083 ggtacgaggatgagcccccagaacctgagattgagg 59048

---

>gb|AF153278.1|AF153278 Nicotiana tabacum DNA-directed RNA polymerase IIb (NT193) mRNA,
           complete cds
          Length = 830

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 95/113 (84%)
 Strand = Plus / Plus

                                                                       
Query: 238 tatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatg 297
           |||||||| |||||||| || ||  | ||||| ||||| |||||  | ||||| ||||||
Sbjct: 263 tatatgacaaaatatgaacgtgctagaatcctgggcactcgtgcactccagatcagcatg 322

                                                                
Query: 298 aatgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgc 350
           |||||||| || ||||||||| | ||||| ||||||||||| |||||||||||
Sbjct: 323 aatgctcctgtgatggttgagttggagggggaaactgatccacttgagattgc 375

---

>ref|XM_477992.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 414

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 92/108 (85%), Gaps = 4/108 (3%)
 Strand = Plus / Plus

                                                                       
Query: 238 tatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatg 297
           |||||||| ||||| ||||| |||||||||||||| |||| ||| |||||||||   |||
Sbjct: 137 tatatgacaaaatacgagcgtgcacgcatccttggtacac-tgccttgcagata---atg 192

                                                           
Query: 298 aatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 345
           |||||||  |||||||| |||||||| || || |||||||| ||||||
Sbjct: 193 aatgctcttgttatggtcgagcttgatggggagactgatccacttgag 240

---

>gb|AF153277.1|AF153277 Nicotiana tabacum DNA-directed RNA polymerase IIa mRNA, complete
           cds
          Length = 810

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 94/113 (83%)
 Strand = Plus / Plus

                                                                       
Query: 238 tatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatg 297
           |||||||| |||||||| || ||  | ||||| ||||| |||||  | ||||| ||||||
Sbjct: 263 tatatgacaaaatatgaacgtgctagaatcctgggcactcgtgcactccagatcagcatg 322

                                                                
Query: 298 aatgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgc 350
           |||||||| || ||||||||| | ||||| ||||||||||| || ||||||||
Sbjct: 323 aatgctcctgtgatggttgagttggagggggaaactgatccactcgagattgc 375

---

>gb|AC006955.6| Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence
          Length = 116217

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                    
Query: 292    agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 345
              |||||||||||||| |||||||||||| | |||||||| |||||||| ||||||
Sbjct: 109669 agcatgaatgctcctgttatggttgagttggagggtgagactgatccacttgag 109722



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                 
Query: 240    tatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagat 290
              |||||| || ||||| || ||||| ||||| ||||| ||||||||||||||
Sbjct: 109531 tatgactaagtatgaacgtgcacgtatcctcggcactcgtgctttgcagat 109581



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 55     atggcggacgacgattacaatgaagt 80
              ||||| ||||||||||||||||||||
Sbjct: 108973 atggctgacgacgattacaatgaagt 108998

---

>dbj|AB015478.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15
          Length = 81347

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                  
Query: 292  agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 345
            |||||||||||||| || ||||||||||| |||||||| |||||||| ||||||
Sbjct: 6912 agcatgaatgctcctgtcatggttgagctagagggtgagactgatccacttgag 6965



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                        
Query: 217  cgtccacgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatccttggcaca 276
            ||||||||||| ||  |||| | ||||||||| |||||||| || || ||||| ||||| 
Sbjct: 6749 cgtccacgcaaaacgtcaaagtttatgaccaagtatgagcgtgctcgtatcctcggcact 6808

                          
Query: 277  cgtgctttgcagat 290
            || |||||||||||
Sbjct: 6809 cgcgctttgcagat 6822

---

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                            
Query: 233      caaaatatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataa 292
                |||| |||||||| ||||| ||||| |||||||||||| | |||||||| ||||||||||
Sbjct: 20463019 caaagtatatgacaaaatacgagcgtgcacgcatccttagtacacgtgccttgcagataa 20463078

                 
Query: 293      g 293
                |
Sbjct: 20463079 g 20463079



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 292      agcatgaatgctccagttatggttgagcttga 323
                |||||||||||||| |||||||| ||||||||
Sbjct: 20463171 agcatgaatgctcctgttatggtcgagcttga 20463202



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 89       ggtatgaggatgagcctccagaagctgatattgagg 124
                |||| ||||||||||| |||||| |||| |||||||
Sbjct: 20462791 ggtacgaggatgagcccccagaacctgagattgagg 20462826

---

>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0456B03
          Length = 152973

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                         
Query: 233   caaaatatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataa 292
             |||| |||||||| ||||| ||||| |||||||||||| | |||||||| ||||||||||
Sbjct: 93649 caaagtatatgacaaaatacgagcgtgcacgcatccttagtacacgtgccttgcagataa 93708

              
Query: 293   g 293
             |
Sbjct: 93709 g 93709



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 292   agcatgaatgctccagttatggttgagcttga 323
             |||||||||||||| |||||||| ||||||||
Sbjct: 93801 agcatgaatgctcctgttatggtcgagcttga 93832



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 89    ggtatgaggatgagcctccagaagctgatattgagg 124
             |||| ||||||||||| |||||| |||| |||||||
Sbjct: 93421 ggtacgaggatgagcccccagaacctgagattgagg 93456

---

>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                          
Query: 242    tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 301
              |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || |||||||
Sbjct: 905587 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 905528

                  
Query: 302    ctcc 305
              ||||
Sbjct: 905527 ctcc 905524



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                          
Query: 242    tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 301
              |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || |||||||
Sbjct: 903612 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 903553

                  
Query: 302    ctcc 305
              ||||
Sbjct: 903552 ctcc 903549

---

>gb|AC023489.8| Trypanosoma brucei chromosome 4 clone RPCI93-26G5, complete sequence
          Length = 79024

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                         
Query: 242   tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 301
             |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || |||||||
Sbjct: 29577 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 29518

                 
Query: 302   ctcc 305
             ||||
Sbjct: 29517 ctcc 29514



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                         
Query: 242   tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 301
             |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || |||||||
Sbjct: 27602 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 27543

                 
Query: 302   ctcc 305
             ||||
Sbjct: 27542 ctcc 27539

---

>gb|BT014606.1| Lycopersicon esculentum clone 134086R, mRNA sequence
          Length = 652

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 117/146 (80%)
 Strand = Plus / Plus

                                                                       
Query: 286 cagataagcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 345
           ||||| ||||||||||| || || ||||||||||| || || |||||||| || ||||||
Sbjct: 315 cagatcagcatgaatgcacctgtgatggttgagctggaaggagaaactgacccacttgag 374

                                                                       
Query: 346 attgccattaaagaactgagagcacgcaagatccccttcacgattaggcggtacttacct 405
           ||||| || ||||| ||  |||   | ||||| || ||||| ||| | || ||||| |||
Sbjct: 375 attgcaatgaaagagctccgagagaggaagataccattcacaattcgccgttacttgcct 434

                                     
Query: 406 gatggaagctatgangactgnggagt 431
           |||||||| ||||| || || |||||
Sbjct: 435 gatggaagttatgaagattggggagt 460

---

>ref|XM_820271.1| Trypanosoma brucei TREU927 clone RPCI93-26G5 DNA-directed RNA
           polymerase subunit (Tb927.4.3510) partial mRNA
          Length = 435

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 242 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 301
           |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || |||||||
Sbjct: 188 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 247

               
Query: 302 ctcc 305
           ||||
Sbjct: 248 ctcc 251

---

>ref|XM_820269.1| Trypanosoma brucei TREU927 clone RPCI93-26G5 DNA-directed RNA
           polymerase subunit (Tb927.4.3490) partial mRNA
          Length = 435

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 242 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 301
           |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || |||||||
Sbjct: 188 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 247

               
Query: 302 ctcc 305
           ||||
Sbjct: 248 ctcc 251

---

>emb|AM167553.1| Trypanosoma brucei brucei mRNA for RNA polymerase subunit 2RPB6
           (2RPB6 gene), strain 427
          Length = 596

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 242 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 301
           |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || |||||||
Sbjct: 265 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 324

               
Query: 302 ctcc 305
           ||||
Sbjct: 325 ctcc 328

---

>ref|XM_798051.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase
           subunit (Tc00.1047053506199.5) partial mRNA
          Length = 435

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 242 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 299
           |||| ||||| |||||||| ||||||||||||||||| ||  ||||||| ||||||||
Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245

---

>ref|XM_801182.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase
           subunit (Tc00.1047053507673.65) partial mRNA
          Length = 435

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 242 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 299
           |||| ||||| |||||||| ||||||||||||||||| ||  ||||||| ||||||||
Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245

---

>ref|XM_802949.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase
           subunit (Tc00.1047053507159.90) partial mRNA
          Length = 435

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 242 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 299
           |||| ||||| |||||||| ||||||||||||||||| ||  ||||||| ||||||||
Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245

---

>ref|XM_802952.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase
           subunit (Tc00.1047053507159.44) partial mRNA
          Length = 435

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 242 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 299
           |||| ||||| |||||||| ||||||||||||||||| ||  ||||||| ||||||||
Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245

---

>ref|XM_802954.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase
           subunit (Tc00.1047053507159.65) partial mRNA
          Length = 435

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 242 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 299
           |||| ||||| |||||||| ||||||||||||||||| ||  ||||||| ||||||||
Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245

---

>ref|XM_807299.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase
           subunit (Tc00.1047053507485.34) partial mRNA
          Length = 435

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 242 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 299
           |||| ||||| |||||||| ||||||||||||||||| ||  ||||||| ||||||||
Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245

---

>ref|XM_807301.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase
           subunit (Tc00.1047053507485.15) partial mRNA
          Length = 435

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 242 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 299
           |||| ||||| |||||||| ||||||||||||||||| ||  ||||||| ||||||||
Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245

---

>ref|XM_386859.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG06683.1)
           partial mRNA
          Length = 420

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 265 atccttggcacacgtgctttgcagataagcatgaatgc 302
           ||||| |||||||| ||||||||||| |||||||||||
Sbjct: 271 atcctcggcacacgcgctttgcagattagcatgaatgc 308

---

>gb|DQ215323.1| Taeniopygia guttata clone 0058P0006G06 DNA directed RNA polymerase
           II polypeptide F variant 2-like mRNA, complete sequence
          Length = 543

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 346 attgccattaaagaactgagagcacgcaagatcccc 381
           |||||||| |||||||| | ||||||||||||||||
Sbjct: 283 attgccatgaaagaactcaaagcacgcaagatcccc 318

---

>gb|DQ215322.1| Taeniopygia guttata clone 0058P0019A05 DNA directed RNA polymerase
           II polypeptide F variant 1-like mRNA, complete sequence
          Length = 553

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 346 attgccattaaagaactgagagcacgcaagatcccc 381
           |||||||| |||||||| | ||||||||||||||||
Sbjct: 284 attgccatgaaagaactcaaagcacgcaagatcccc 319

---

>gb|AY391257.1| Tetrahymena bergeri heat shock protein 90 gene, partial cds
          Length = 1683

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 183 tgaaggtgaagaaaaggaacaggaaaagactg 214
           ||||| ||||||||||||| ||||||||||||
Sbjct: 591 tgaagatgaagaaaaggaaaaggaaaagactg 622

---

>ref|XM_416631.1| PREDICTED: Gallus gallus similar to MGC53544 protein (LOC418417),
           mRNA
          Length = 1335

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 42  ggcggcgggagccatggcggacg 64
           |||||||||||||||||||||||
Sbjct: 114 ggcggcgggagccatggcggacg 136

---

>ref|XM_706954.1| Candida albicans SC5314 RNA polymerase I, II and III subunit
           (CaO19.10166), mRNA
          Length = 474

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 296 tgaatgctccagttatggttgagcttgagggtgaaactgatcc 338
           |||||||||||||  |||||||  |||| ||||||||||||||
Sbjct: 314 tgaatgctccagtattggttgatattgaaggtgaaactgatcc 356

---

>ref|XM_706933.1| Candida albicans SC5314 putative subunit common to RNA polymerase
           I, II and III (CaO19.2643), mRNA
          Length = 474

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 296 tgaatgctccagttatggttgagcttgagggtgaaactgatcc 338
           |||||||||||||  |||||||  |||| ||||||||||||||
Sbjct: 314 tgaatgctccagtattggttgatattgaaggtgaaactgatcc 356

---

>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
              complete sequence
          Length = 1519138

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                
Query: 241    atgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagat 290
              ||||| ||||||||||| ||||| ||||| ||||| |||||  |||||||
Sbjct: 116573 atgacgaaatatgagcgcgcacgaatcctcggcacgcgtgcgctgcagat 116524

---

>ref|NM_209934.1| Eremothecium gossypii AEL279Cp (AEL279C), mRNA
          Length = 465

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 241 atgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagat 290
           ||||| ||||||||||| ||||| ||||| ||||| |||||  |||||||
Sbjct: 250 atgacgaaatatgagcgcgcacgaatcctcggcacgcgtgcgctgcagat 299

---

>emb|AL354668.13| Human DNA sequence from clone RP11-506P24 on chromosome 13 Contains the
             SPRY2 gene for sprouty homolog 2 (Drosophila) and a CpG
             island, complete sequence
          Length = 191652

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 236   aatatatgaccaaatatgagc 256
             |||||||||||||||||||||
Sbjct: 31019 aatatatgaccaaatatgagc 30999

---

>gb|DQ455231.1| Medicago truncatula cDNA-AFLP fragment BC43M13_162 sequence
          Length = 285

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 397 tacttacctgatggaagctatgangactgnggagt 431
           ||||| ||||||||||||||||| || || |||||
Sbjct: 27  tacttgcctgatggaagctatgaagattggggagt 61

---

>emb|AJ251211.1|GGA251211 Gallus gallus mRNA for RNA polymerase common subunit RPB6 (RPB6
           gene)
          Length = 543

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 345 gattgccattaaagaactgagagcacgcaagat 377
           ||||||||| |||||||| | ||||||||||||
Sbjct: 291 gattgccatgaaagaactcaaagcacgcaagat 323

---

>ref|NM_204734.1| Gallus gallus polymerase (RNA) II (DNA directed) polypeptide F
           (POLR2F), mRNA
          Length = 543

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 345 gattgccattaaagaactgagagcacgcaagat 377
           ||||||||| |||||||| | ||||||||||||
Sbjct: 291 gattgccatgaaagaactcaaagcacgcaagat 323

---

>dbj|AP001578.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1954F7
          Length = 239057

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 190    gaagaaaaggaacaggaaaag 210
              |||||||||||||||||||||
Sbjct: 166095 gaagaaaaggaacaggaaaag 166075

---

>gb|AC159257.2| Mus musculus BAC clone RP24-86H20 from chromosome 5, complete sequence
          Length = 202099

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    gtgaagaaaaggaacaggaa 207
              ||||||||||||||||||||
Sbjct: 126242 gtgaagaaaaggaacaggaa 126261

---

>ref|XM_420148.1| PREDICTED: Gallus gallus similar to RIKEN cDNA A630033H20 gene
           (LOC422147), mRNA
          Length = 1343

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 tgatgtggtagggggtgaag 187
           ||||||||||||||||||||
Sbjct: 969 tgatgtggtagggggtgaag 950

---

>gb|AC122018.4| Mus musculus BAC clone RP24-361O20 from chromosome 10, complete sequence
          Length = 173543

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    gaagaaaaggaacaggaaaa 209
              ||||||||||||||||||||
Sbjct: 132891 gaagaaaaggaacaggaaaa 132872

---

>emb|CR702791.2|CNS0G583 Tetraodon nigroviridis full-length cDNA
          Length = 1252

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 228  tacaacaaaatatatgacca 247
            ||||||||||||||||||||
Sbjct: 1181 tacaacaaaatatatgacca 1162

---

>emb|CR689276.2|CNS0FUSO Tetraodon nigroviridis full-length cDNA
          Length = 1251

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 228  tacaacaaaatatatgacca 247
            ||||||||||||||||||||
Sbjct: 1204 tacaacaaaatatatgacca 1185

---

>emb|CR682388.2|CNS0FPHC Tetraodon nigroviridis full-length cDNA
          Length = 691

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 228 tacaacaaaatatatgacca 247
           ||||||||||||||||||||
Sbjct: 648 tacaacaaaatatatgacca 629

---

>emb|Z93931.1|HS438G17 Human DNA sequence from clone RP3-438G17 on chromosome 6q22 Contains a
             high mobility group protein pseudogene, complete sequence
          Length = 148198

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   gatgatgtggtagggggtga 185
             ||||||||||||||||||||
Sbjct: 65018 gatgatgtggtagggggtga 65037

---

>emb|AL392086.14| Human DNA sequence from clone RP11-799O21 on chromosome 10 Contains the
              3' end of a novel gene and a novel gene, complete sequence
          Length = 220225

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    gaggaaggggttgaagaaga 140
              ||||||||||||||||||||
Sbjct: 114436 gaggaaggggttgaagaaga 114417

---

>gb|DQ443743.1| Transmissible gastroenteritis virus strain SC-Y, complete genome
          Length = 28590

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 130  gttgaagaagatcctgagaa 149
            ||||||||||||||||||||
Sbjct: 3327 gttgaagaagatcctgagaa 3346

---

>emb|AJ271965.2|TGA271965 Transmissible gastroenteritis virus complete genome, genomic RNA
          Length = 28586

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 130  gttgaagaagatcctgagaa 149
            ||||||||||||||||||||
Sbjct: 3327 gttgaagaagatcctgagaa 3346

---

>emb|CR749748.11| Zebrafish DNA sequence from clone DKEY-246E1 in linkage group 22,
             complete sequence
          Length = 53266

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   ggtgaaggtgaagaaaagga 200
             ||||||||||||||||||||
Sbjct: 19628 ggtgaaggtgaagaaaagga 19647

---

>gb|AC115889.13| Mus musculus chromosome 3, clone RP24-409N2, complete sequence
          Length = 166218

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   aaaggaacaggaaaagactg 214
             ||||||||||||||||||||
Sbjct: 31384 aaaggaacaggaaaagactg 31403

---

>gb|AC157588.8| Mus musculus BAC clone RP24-95J4 from chromosome 5, complete sequence
          Length = 220137

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    gtgaagaaaaggaacaggaa 207
              ||||||||||||||||||||
Sbjct: 175901 gtgaagaaaaggaacaggaa 175882

---

>dbj|AB254449.1| Phragmites australis PhaHAK2-e mRNA for potassium transporter,
          complete cds, strain: Enchi
          Length = 2429

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 48 gggagccatggcggacgacg 67
          ||||||||||||||||||||
Sbjct: 57 gggagccatggcggacgacg 76

---

>dbj|AB254448.1| Phragmites australis PhaHAK2-n mRNA for potassium transporter,
          complete cds, strain: Nanpi
          Length = 2430

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 48 gggagccatggcggacgacg 67
          ||||||||||||||||||||
Sbjct: 57 gggagccatggcggacgacg 76

---

>dbj|AB254447.1| Phragmites australis PhaHAK2-u mRNA for potassium transporter,
          complete cds, strain: Utsunomiya
          Length = 2493

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 48 gggagccatggcggacgacg 67
          ||||||||||||||||||||
Sbjct: 57 gggagccatggcggacgacg 76

---

>gb|AC092995.7| Homo sapiens 3 BAC RP11-692L6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 115749

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   aaaatatatgaccaaatatg 253
             ||||||||||||||||||||
Sbjct: 70712 aaaatatatgaccaaatatg 70731

---

>dbj|AB229799.1| Aspergillus oryzae cDNA, contig sequence: AoEST6683
          Length = 527

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 atgaccaaatatgagcgggc 260
           ||||||||||||||||||||
Sbjct: 380 atgaccaaatatgagcgggc 399

---

>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 241     atgaccaaatatgagcgggc 260
               ||||||||||||||||||||
Sbjct: 2173736 atgaccaaatatgagcgggc 2173755

---

>gb|AC115111.2| Homo sapiens BAC clone RP11-286J9 from 4, complete sequence
          Length = 113684

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   gaagaaaaggaacaggaaaa 209
             ||||||||||||||||||||
Sbjct: 76769 gaagaaaaggaacaggaaaa 76750

---

>gb|DQ390461.1| Transmissible gastroenteritis virus isolate SC-Y replicase 1a (orf1a)
            gene, complete cds; and replicase 1b (orf1b) gene,
            partial cds
          Length = 20368

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 130  gttgaagaagatcctgagaa 149
            ||||||||||||||||||||
Sbjct: 3327 gttgaagaagatcctgagaa 3346

---

>emb|BX088704.7| Zebrafish DNA sequence from clone CH211-208M6 in linkage group 7,
            complete sequence
          Length = 209042

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 180  gggtgaaggtgaagaaaagg 199
            ||||||||||||||||||||
Sbjct: 5436 gggtgaaggtgaagaaaagg 5417

---

>gb|AC114533.17| Mus musculus chromosome 1, clone RP24-255G23, complete sequence
          Length = 147505

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  tgatgatgtggtagggggtg 184
            ||||||||||||||||||||
Sbjct: 7253 tgatgatgtggtagggggtg 7234

---

>emb|Z34093.1|TGVPOLL Transmissible gastroenteritis virus (Purdue-115) mRNA for polymerase
            locus
          Length = 20600

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 130  gttgaagaagatcctgagaa 149
            ||||||||||||||||||||
Sbjct: 3327 gttgaagaagatcctgagaa 3346

---

>gb|AC114618.9| Mus musculus chromosome 3, clone RP24-86C15, complete sequence
          Length = 209209

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   aaaggaacaggaaaagactg 214
             ||||||||||||||||||||
Sbjct: 15161 aaaggaacaggaaaagactg 15142

---

>gb|AC099702.12| Mus musculus chromosome 1, clone RP23-218F13, complete sequence
          Length = 195716

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 165  tgatgatgtggtagggggtg 184
            ||||||||||||||||||||
Sbjct: 1824 tgatgatgtggtagggggtg 1843

---

>emb|AL133477.16| Human DNA sequence from clone RP11-172F4 on chromosome 9q22.2-31.1
             Contains the 3' end of the CDC14B gene for the CDC14 cell
             division cycle 14 homolog B (S. cerevisiae) the HABP4 gene
             for hyaluronan binding protein 4, the gene for a novel
             protein similar to a zinc finger protein, TINP1
             pseudogene, a novel gene and three CpG islands, complete
             sequence
          Length = 139118

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   caaaatatatgaccaaatat 252
             ||||||||||||||||||||
Sbjct: 87919 caaaatatatgaccaaatat 87938

---

>emb|AL772255.12| Mouse DNA sequence from clone RP23-172B16 on chromosome 2, complete
              sequence
          Length = 205973

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    agaaaaggaacaggaaaaga 211
              ||||||||||||||||||||
Sbjct: 155124 agaaaaggaacaggaaaaga 155143

---

>gb|M26939.1|HUMCOL3A1A Human collagen type-III (COL3A1) gene, 5' end
          Length = 2275

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 181 ggtgaaggtgaagaaaagga 200
           ||||||||||||||||||||
Sbjct: 487 ggtgaaggtgaagaaaagga 506

---

>emb|AL627347.10| Mouse DNA sequence from clone RP23-120A10 on chromosome 4, complete
              sequence
          Length = 144239

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     atggggtatgaggatgagcc 104
              ||||||||||||||||||||
Sbjct: 129275 atggggtatgaggatgagcc 129256


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,714,157
Number of Sequences: 3902068
Number of extensions: 3714157
Number of successful extensions: 78781
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78440
Number of HSP's gapped (non-prelim): 329
length of query: 481
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 459
effective length of database: 17,147,199,772
effective search space: 7870564695348
effective search space used: 7870564695348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---