ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags36o01 |
|---|---|
| Clone Library Name | barley_pub |
>VIP1_SCHPO (P87216) Protein vip1| Length = 257 Score = 61.2 bits (147), Expect = 2e-09 Identities = 54/183 (29%), Positives = 84/183 (45%) Frame = +2 Query: 74 VEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVLLSGAT 253 V VTN+S +E + +FFSF G + +I +S G TA + F+ P A +TA+LL A Sbjct: 5 VIVTNISPEVTEKQISDFFSFCGKVSNISTEKS-GETQTAKIQFERPSATKTALLLQDAL 63 Query: 254 IVDQPVCISRWGQPDEPSNFWDRPTWQVEEEIEYRDYQSCQFNATPQEALTVAQDVVKTM 433 + GQ D ++ Q+ + P+ A ++ + Sbjct: 64 L----------GQNKIQITSEDGGAASTTDQGGAGGDQAARQEDKPRSA------IISEL 107 Query: 434 LSRGYILSKDALSRARAFDESHQLSGSAAAKAAELSRRLGLTDRVSAGVGAIRSVDETYH 613 LSRGY LS L ++ D+S+ +S S+ G+ + +GV RSV+E YH Sbjct: 108 LSRGYHLSDVTLEKSIQLDQSYGVS----------SKFKGILESALSGV---RSVNERYH 154 Query: 614 VTE 622 VTE Sbjct: 155 VTE 157
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%) Frame = +2 Query: 71 TVEVTNLSSSASENDLHEFFSFSGPIEHIDLIR---SGGYGSTAYVTFKEPYALETAVLL 241 TV V+ L++ + +L++FF +GP+ ++R SG AYV F +++ A+ L Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIAL 300 Query: 242 SGATIVDQPVCI 277 SG ++ PV + Sbjct: 301 SGKRLLGLPVIV 312
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 38.9 bits (89), Expect = 0.012 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 6/83 (7%) Frame = +2 Query: 50 IMSGTGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLI------RSGGYGSTAYVTFKE 211 I S +T V NLS +ENDL +FF + I L+ RS G+G YV F+ Sbjct: 88 IPSEPPFTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFG---YVEFET 142 Query: 212 PYALETAVLLSGATIVDQPVCIS 280 L A+ LSG ++ +PV I+ Sbjct: 143 ADTLSAALALSGEDLMGRPVRIT 165
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 34.7 bits (78), Expect = 0.23 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = +2 Query: 71 TVEVTNLSSSASENDLHEFFSFSGPIEHIDL---IRSGGYGSTAYVTFKEPYALETAVLL 241 TV V NLS +A+E+DL F G I+ I L +SG YVTF + + + V + Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426 Query: 242 SGATIVDQP 268 +G I +P Sbjct: 427 NGHFIAGRP 435
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 34.3 bits (77), Expect = 0.31 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Frame = +2 Query: 71 TVEVTNLSSSASENDLHEFFSFSGPIEHIDLIR---SGGYGSTAYVTFKEPYALETAVLL 241 +V V N+ S + +L F+ G + + ++ +G AY+ F EP + A+LL Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLL 115 Query: 242 SGATIVDQPVCIS 280 +G+ + ++P+ ++ Sbjct: 116 NGSMLHERPLKVT 128
>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)| Length = 452 Score = 34.3 bits (77), Expect = 0.31 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 9/89 (10%) Frame = +2 Query: 74 VEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGS------TAYVTFKEPYALETAV 235 + V N+S+SA+ + ++ F++ G I+ + + S G + TA++ F + +E A Sbjct: 12 LHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCVEVAQ 71 Query: 236 LLSGATIVDQPVCISRWGQ---PDEPSNF 313 L+ ++D + + PDE S F Sbjct: 72 HLTNTVVIDCAIVCLPYPNPVIPDEESFF 100
>HNRPF_MACFA (Q60HC3) Heterogeneous nuclear ribonucleoprotein F (hnRNP F)| Length = 414 Score = 33.9 bits (76), Expect = 0.40 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +2 Query: 50 IMSGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 205 + S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 282 VQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 334
>HNRPF_HUMAN (P52597) Heterogeneous nuclear ribonucleoprotein F (hnRNP F)| (Nucleolin-like protein mcs94-1) Length = 414 Score = 33.9 bits (76), Expect = 0.40 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +2 Query: 50 IMSGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 205 + S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 282 VQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 334
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 33.1 bits (74), Expect = 0.68 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Frame = +2 Query: 74 VEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSG----GYGSTAYVTFKEPYALETAVLL 241 V V L E L E FS G +E++ ++R G G AYV FK+ ++E A+LL Sbjct: 276 VFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGF-AYVQFKDVNSVEQALLL 334 Query: 242 SGATI 256 +G I Sbjct: 335 NGKGI 339
>SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arginine-rich 54| kDa nuclear protein) (p54) Length = 484 Score = 33.1 bits (74), Expect = 0.68 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%) Frame = +2 Query: 74 VEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGG-----YGSTAYVTFKEPYALETAVL 238 ++VTN+S SAS + F F G I+ + L +V F +P + A Sbjct: 35 IQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQH 94 Query: 239 LSGATIVDQPVCISRWGQ---PDE 301 L+ VD+ + + + + PDE Sbjct: 95 LTNTVFVDRALIVVPYAEGVIPDE 118
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 32.7 bits (73), Expect = 0.89 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +2 Query: 62 TGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVL- 238 +G V + L+ +A E D+ FF G I IDL R G+G +V F++P + AV Sbjct: 2 SGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--GFG---FVEFEDPRDADDAVYE 56 Query: 239 LSGATIVDQPVCI 277 L G + + V I Sbjct: 57 LDGKELCSERVTI 69
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 32.7 bits (73), Expect = 0.89 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +2 Query: 62 TGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVL- 238 +G V + L+ +A E D+ FF G I IDL R G+G +V F++P + AV Sbjct: 2 SGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--GFG---FVEFEDPRDADDAVYE 56 Query: 239 LSGATIVDQPVCI 277 L G + + V I Sbjct: 57 LDGKELCSERVTI 69
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 32.7 bits (73), Expect = 0.89 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +2 Query: 62 TGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVL- 238 +G V + L+ +A E D+ FF G I IDL R G+G +V F++P + AV Sbjct: 2 SGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--GFG---FVEFEDPRDADDAVYE 56 Query: 239 LSGATIVDQPVCI 277 L G + + V I Sbjct: 57 LDGKELCSERVTI 69
>HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)| Length = 448 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +2 Query: 56 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 205 S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 284 STTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 334
>HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)| Length = 448 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +2 Query: 56 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 205 S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 284 STTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 334
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 32.3 bits (72), Expect = 1.2 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 5/75 (6%) Frame = +2 Query: 62 TGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLI--RSG---GYGSTAYVTFKEPYALE 226 T T+ V + EN++ EFF+ G ++ + +I R G GYG +V F E ++ Sbjct: 45 TPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYG---FVYFSEDVDIQ 101 Query: 227 TAVLLSGATIVDQPV 271 TIVDQP+ Sbjct: 102 --------TIVDQPI 108
>PRP24_YEAST (P49960) U4/U6 snRNA-associated splicing factor PRP24 (U4/U6 snRNP| protein) Length = 444 Score = 32.3 bits (72), Expect = 1.2 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +2 Query: 71 TVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRS 172 TV V NL S ++N ++++F GPI H+D+ S Sbjct: 42 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADS 75
>PPT2_RAT (O70489) Palmitoyl-protein thioesterase 2 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 2) (PPT-2) Length = 302 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/79 (26%), Positives = 33/79 (41%) Frame = +2 Query: 89 LSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVLLSGATIVDQP 268 L S E+++ F S S P + G YG T Y+ + P ++ + + Sbjct: 120 LLSVMDEHNVDSFISLSSP-------QMGQYGDTDYLKWLFPTSMRSNLYR--------- 163 Query: 269 VCISRWGQPDEPSNFWDRP 325 +C S WGQ N+W P Sbjct: 164 ICYSPWGQEFSICNYWHDP 182
>HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')| Length = 449 Score = 31.6 bits (70), Expect = 2.0 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +2 Query: 56 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 205 S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 285 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
>HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')| (FTP-3) Length = 449 Score = 31.6 bits (70), Expect = 2.0 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +2 Query: 56 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 205 S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 285 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
>RX_DROME (Q9W2Q1) Retinal homeobox protein Rx (DRx1) (DRx)| Length = 873 Score = 31.6 bits (70), Expect = 2.0 Identities = 24/89 (26%), Positives = 35/89 (39%) Frame = -3 Query: 476 PWTMRPCSVCIPSTASSSRRPEPLSKPPVEWR*TGMIGSPYIQFPPRPAKLACPRNY*AH 297 P ++ P ++ + S A+ PP G G Q PP P P + +H Sbjct: 645 PLSLAPGNLTMSSLAAMGHHHAHNGPPPPH---VGHGGHGQPQPPPPPPPHGVPHPHGSH 701 Query: 296 QAVPNEICTPADPQW*PHSTILQFPRHRV 210 VP +P + PH+T L P H V Sbjct: 702 HVVPLSHLSPHLSRMSPHATSLGSPHHGV 730
>GALA_BOVIN (P11242) Galanin precursor [Contains: Galanin; Galanin| message-associated peptide (GMAP)] Length = 123 Score = 31.2 bits (69), Expect = 2.6 Identities = 20/59 (33%), Positives = 29/59 (49%) Frame = +2 Query: 428 TMLSRGYILSKDALSRARAFDESHQLSGSAAAKAAELSRRLGLTDRVSAGVGAIRSVDE 604 T+ S GY+L AL R+F + H L+G + E R G DR A +R++ E Sbjct: 35 TLNSAGYLLGPHALDSHRSFQDKHGLAGKRELE-PEDEARPGSFDRPLAENNVVRTIIE 92
>FIRA_PLAFF (P06916) 300 kDa antigen AG231 (Fragment)| Length = 310 Score = 31.2 bits (69), Expect = 2.6 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 4/105 (3%) Frame = +2 Query: 170 SGGYGSTAYVTFKEPYALETAVLLSGATIVDQPVCISRWGQPDEPSNFWDRPTWQ----V 337 +G G+T VT +E + V + +PV I EP + T Q Sbjct: 20 TGSCGNTRTVTTQESVTTQEPVTIEEPVTTQEPVTIEEPVTTQEPVTIEEPVTTQEPVTT 79 Query: 338 EEEIEYRDYQSCQFNATPQEALTVAQDVVKTMLSRGYILSKDALS 472 +E + ++ + Q T QE +TV + + + S G +S +LS Sbjct: 80 QEPVTTQEPVTTQEPVTTQEPVTVEEHIDEKKGSEGDNISLSSLS 124
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 31.2 bits (69), Expect = 2.6 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Frame = +2 Query: 74 VEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVL-LSGA 250 V V NL + A + +L FS+ GP+ + + R+ A+V F++P E AV L G Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNP--PGFAFVEFEDPRDAEDAVRGLDGK 70 Query: 251 TIVDQPVCISRWGQPDEPSNFWDRP 325 I V + S F DRP Sbjct: 71 VICGSRVRVELSTGMPRRSRF-DRP 94
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 31.2 bits (69), Expect = 2.6 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Frame = +2 Query: 74 VEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVL-LSGA 250 V V NL + A + +L FS+ GP+ + + R+ A+V F++P E AV L G Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNP--PGFAFVEFEDPRDAEDAVRGLDGK 99 Query: 251 TIVDQPVCISRWGQPDEPSNFWDRP 325 I V + S F DRP Sbjct: 100 VICGSRVRVELSTGMPRRSRF-DRP 123
>PPT2_HUMAN (Q9UMR5) Palmitoyl-protein thioesterase 2 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 2) (PPT-2) (G14) Length = 302 Score = 31.2 bits (69), Expect = 2.6 Identities = 20/79 (25%), Positives = 33/79 (41%) Frame = +2 Query: 89 LSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVLLSGATIVDQP 268 L S ++++ F S S P + G YG T Y+ + P ++ + + Sbjct: 120 LLSVMDDHNVDSFISLSSP-------QMGQYGDTDYLKWLFPTSMRSNLYR--------- 163 Query: 269 VCISRWGQPDEPSNFWDRP 325 +C S WGQ N+W P Sbjct: 164 ICYSPWGQEFSICNYWHDP 182
>GALA_MOUSE (P47212) Galanin precursor [Contains: Galanin; Galanin| message-associated peptide (GMAP)] Length = 124 Score = 30.8 bits (68), Expect = 3.4 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = +2 Query: 428 TMLSRGYILSKDALSRARAFDESHQLSGSAAAKAAELSRRLGLTDRVSAGVGAIRSVDE 604 T+ S GY+L A+ R+F + H L+G + RR G D +R++ E Sbjct: 35 TLNSAGYLLGPHAIDNHRSFSDKHGLTGKRELQLEVEERRPGSVDVPLPESNIVRTIME 93
>PPT2_MOUSE (O35448) Palmitoyl-protein thioesterase 2 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 2) (PPT-2) Length = 302 Score = 30.8 bits (68), Expect = 3.4 Identities = 21/79 (26%), Positives = 32/79 (40%) Frame = +2 Query: 89 LSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVLLSGATIVDQP 268 L S +++ F S S P + G YG T Y+ + P ++ + + Sbjct: 120 LLSVMDNHNVDSFISLSSP-------QMGQYGDTDYLKWLFPTSMRSNLYR--------- 163 Query: 269 VCISRWGQPDEPSNFWDRP 325 VC S WGQ N+W P Sbjct: 164 VCYSPWGQEFSICNYWHDP 182
>MUS81_ASPFU (Q4WYE5) Crossover junction endonuclease mus81 (EC 3.1.22.-)| Length = 596 Score = 30.8 bits (68), Expect = 3.4 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 6/100 (6%) Frame = +2 Query: 152 HIDLIRSGGYG---STAYVTFKEPYALETAVLLSGATIVDQPVCISRWGQPDEPSNF--- 313 ++ +RSG Y A + L A L+ A QP C S + P +PS F Sbjct: 113 YVPSLRSGPYALLLGLATLDENASQGLTKAQLIEKA----QPYCDSSFTAPPDPSKFYTA 168 Query: 314 WDRPTWQVEEEIEYRDYQSCQFNATPQEALTVAQDVVKTM 433 W+ +++E+ Y + + A +E VA+ + KT+ Sbjct: 169 WNSMKTLLQKELVYEHGRPLRRYALTEEGWEVAKRIKKTL 208
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 30.4 bits (67), Expect = 4.4 Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 11/183 (6%) Frame = +2 Query: 53 MSGTGYTVEVTNLSSSASENDLHEFFSFSGPIEH----IDLI-RSGGYGSTAYVTFKEPY 217 +SG G V + NL +S L+E FS G I +D++ RS GYG +V F++ Sbjct: 128 LSGKG-NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYG---FVQFEKEE 183 Query: 218 ALETAV-LLSGATIVDQPVCISRWGQPDEPSNFWDRPTWQVEEEIEYRDYQSCQFNATPQ 394 + A+ L+G + D+ V + + + + + E + + P+ Sbjct: 184 TAQAAIDKLNGMLLNDKQVFVGHFVRRQDRAR---------SESGAVPSFTNVYVKNLPK 234 Query: 395 EALTVAQDVVKTMLSR-----GYILSKDALSRARAFDESHQLSGSAAAKAAELSRRLGLT 559 E + D +K + ++ KD +R+F + +S AAA A E + L Sbjct: 235 E---ITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLG 291 Query: 560 DRV 568 + V Sbjct: 292 EDV 294
>LECB_PHYAM (Q9AVB0) Lectin-B precursor (PL-B)| Length = 361 Score = 30.4 bits (67), Expect = 4.4 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 190 CLCDFQGTLCLGNCSIVEWGYHCGSAGVHISLG 288 C DF G CL + EWG+ CGS+ H G Sbjct: 215 CGKDFAGRTCLNDLCCSEWGW-CGSSEAHCGQG 246
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 30.4 bits (67), Expect = 4.4 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Frame = +2 Query: 71 TVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRS-GGYGSTAYVTFKEPYALETAV-LLS 244 ++ V NL+ ++ DL EFFS G + D+I S G + V F ++ A+ Sbjct: 137 SIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHHRGMGTVEFTNSDDVDRAIRQYD 196 Query: 245 GATIVDQPVCISRWGQPDEPSN 310 GA +D+ + + + P PSN Sbjct: 197 GAFFMDRKIFVRQDNPP--PSN 216
>HNRH3_HUMAN (P31942) Heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3)| (hnRNP 2H9) Length = 346 Score = 30.4 bits (67), Expect = 4.4 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Frame = +2 Query: 65 GYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSG---GYGSTAYVTFKEPYA 220 G+ V + L A+END+ FFS PI HID+ G G +VT ++ A Sbjct: 194 GHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVA 249
>GALA_PIG (P07480) Galanin precursor [Contains: Galanin; Galanin| message-associated peptide (GMAP)] Length = 123 Score = 30.0 bits (66), Expect = 5.8 Identities = 18/59 (30%), Positives = 32/59 (54%) Frame = +2 Query: 428 TMLSRGYILSKDALSRARAFDESHQLSGSAAAKAAELSRRLGLTDRVSAGVGAIRSVDE 604 T+ S GY+L A+ R+F + + L+G + + +R G DR+ + AIR++ E Sbjct: 35 TLNSAGYLLGPHAIDNHRSFHDKYGLAGKRELEPEDEARPGGF-DRLQSEDKAIRTIME 92
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 30.0 bits (66), Expect = 5.8 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = +2 Query: 56 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDL---IRSGGYGSTAYVTFKEPYALE 226 S + TV V NL E ++ + FS GP+ IDL R GY A+V F + E Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGY---AFVEFDDARDAE 59 Query: 227 TAV 235 A+ Sbjct: 60 DAI 62
>ITA5_XENLA (Q06274) Integrin alpha-5 precursor (Fibronectin receptor alpha| subunit) (Integrin alpha-F) (VLA-5) [Contains: Integrin alpha-5 heavy chain; Integrin alpha-5 light chain] Length = 1050 Score = 30.0 bits (66), Expect = 5.8 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +3 Query: 246 GLPLWISRCAYLVGDSLMSLVISGTGQLGRSRRKLNIGT 362 G+PLWI A L+G L++L+I +LG +R GT Sbjct: 997 GVPLWIIILAILIGLLLLALLIYVLYKLGFFKRSYQYGT 1035
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 30.0 bits (66), Expect = 5.8 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 6/62 (9%) Frame = +2 Query: 59 GTGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLI------RSGGYGSTAYVTFKEPYA 220 G GY V + L S+ +E DL FF+ G + + ++ +S G+G +++F+E + Sbjct: 93 GGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFG---FLSFEEESS 149 Query: 221 LE 226 +E Sbjct: 150 VE 151
>YAD1_YEAST (P39732) Protein YAL031C| Length = 760 Score = 30.0 bits (66), Expect = 5.8 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Frame = +2 Query: 305 SNFWDRPTWQVEEEIEYRDYQSCQFNATPQEAL-----TVAQDVVKTMLS--RGYILSKD 463 +NF D W EE+ Y+SC +N + Q + +AQ+ +K + R +L +D Sbjct: 118 TNFIDVEGWMFPEEVPLDHYKSCIYNNSLQWKILNSLSCIAQNAIKIYNAKLRQILLERD 177 Query: 464 AL-SRARAFDES 496 A +R+ FD S Sbjct: 178 AYKARSLPFDTS 189
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 29.6 bits (65), Expect = 7.6 Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 24/125 (19%) Frame = +2 Query: 71 TVEVTNLSSSASENDLHEFFSFSGPIEHI---DLIRSGGYGS-----------------T 190 TV V NL + ++ L FF G IE + LI + G S Sbjct: 186 TVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNIN 245 Query: 191 AYVTFKEPYALETAVLLSGATIVD----QPVCISRWGQPDEPSNFWDRPTWQVEEEIEYR 358 AYV FKE A A+ +GA I D + S D+ S F ++VEE + Sbjct: 246 AYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEK 305 Query: 359 DYQSC 373 + C Sbjct: 306 HFLDC 310
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 29.6 bits (65), Expect = 7.6 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Frame = +2 Query: 56 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRS------GGYGSTAYVTFKEPY 217 +GTG+ + V NLS + E+ L + F G + ++ +IR G+G + E Sbjct: 293 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE-- 350 Query: 218 ALETAVLLSGATIVDQPVCIS 280 A L+G + D+ + +S Sbjct: 351 AAMAIASLNGYRLGDRVLQVS 371
>5HT1D_RABIT (P49145) 5-hydroxytryptamine 1D receptor (5-HT-1D) (Serotonin| receptor 1D) (5-HT-1D-alpha) Length = 377 Score = 29.6 bits (65), Expect = 7.6 Identities = 25/78 (32%), Positives = 35/78 (44%) Frame = +2 Query: 344 EIEYRDYQSCQFNATPQEALTVAQDVVKTMLSRGYILSKDALSRARAFDESHQLSGSAAA 523 +I Y Y +C P L V + M +R IL+ +L R F +H ++GSA + Sbjct: 194 QISYTIYSTCGAFYIPSVLLIVLYGRIY-MAARNRILNPPSLYGKR-FTTAHLITGSAGS 251 Query: 524 KAAELSRRLGLTDRVSAG 577 LS LG SAG Sbjct: 252 SLCSLSPSLGEGHSHSAG 269
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 29.6 bits (65), Expect = 7.6 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Frame = +2 Query: 56 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRS------GGYGSTAYVTFKEPY 217 +GTG+ + V NLS + E+ L + F G + ++ +IR G+G + E Sbjct: 298 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE-- 355 Query: 218 ALETAVLLSGATIVDQPVCIS 280 A L+G + D+ + +S Sbjct: 356 AAMAIASLNGYRLGDRVLQVS 376
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 29.6 bits (65), Expect = 7.6 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Frame = +2 Query: 56 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRS------GGYGSTAYVTFKEPY 217 +GTG+ + V NLS + E+ L + F G + ++ +IR G+G + E Sbjct: 286 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE-- 343 Query: 218 ALETAVLLSGATIVDQPVCIS 280 A L+G + D+ + +S Sbjct: 344 AAMAIASLNGYRLGDRVLQVS 364
>LRRK1_HUMAN (Q38SD2) Leucine-rich repeat serine/threonine-protein kinase 1 (EC| 2.7.11.1) Length = 2038 Score = 29.3 bits (64), Expect = 9.9 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +2 Query: 227 TAVLLSGATIVDQ----PVCISRWGQPDEPSNFWDRPTWQVEEEIEYRDYQSCQFNATPQ 394 TA G +++Q PVC + W Q +PS + E+++Y D + C A + Sbjct: 1172 TATESDGTPLMEQYVPCPVCETAWAQHTDPS--------EKSEDVQYFDMEDCVLTAIER 1223 Query: 395 EALT 406 + ++ Sbjct: 1224 DFIS 1227
>ITA5_MOUSE (P11688) Integrin alpha-5 precursor (Fibronectin receptor alpha| subunit) (Integrin alpha-F) (VLA-5) (CD49e antigen) [Contains: Integrin alpha-5 heavy chain; Integrin alpha-5 light chain] Length = 1053 Score = 29.3 bits (64), Expect = 9.9 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = +3 Query: 246 GLPLWISRCAYLVGDSLMSLVISGTGQLGRSRRKLNIGT 362 G+PLWI A L G L+ L+I +LG +R L GT Sbjct: 1000 GVPLWIIILAILFGLLLLGLLIYVLYKLGFFKRSLPYGT 1038
>SYEP_HUMAN (P07814) Bifunctional aminoacyl-tRNA synthetase [Includes:| Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase); Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA ligase)] Length = 1440 Score = 29.3 bits (64), Expect = 9.9 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Frame = +2 Query: 308 NFWDRPTWQVEEEIEYRDYQSCQFNATPQ---EALTVAQDVVKTML 436 N W+ + E+ RD +SCQF A + E LTVA++ +T L Sbjct: 1284 NHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKL 1329 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,299,114 Number of Sequences: 219361 Number of extensions: 2046521 Number of successful extensions: 5766 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 5527 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5759 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
