ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags37c22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
4gb|AF132119.1|AF132119 Pinus taeda laccase (Lac1) mRNA, complete... 56 1e-04
5gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
6dbj|AK066963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
7gb|AF465469.1| Lolium perenne laccase LAC2-1 mRNA, complete cds 50 0.008
8ref|XM_467807.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.13
9ref|NM_196671.1| Oryza sativa (japonica cultivar-group) putative... 46 0.13
10ref|NM_193864.1| Oryza sativa (japonica cultivar-group), predic... 46 0.13
11ref|NM_101674.3| Arabidopsis thaliana copper ion binding AT1G181... 44 0.52
12gb|AF465470.1| Lolium perenne laccase LAC5-4 mRNA, complete cds 44 0.52
13gb|AC034107.5|T10F20 Sequence of BAC T10F20 from Arabidopsis tha... 44 0.52
14gb|AC069551.4|AC069551 Genomic sequence for Arabidopsis thaliana... 44 0.52
15gb|U73105.1|LTU73105 Liriodendron tulipifera high-pI laccase (LA... 44 0.52
16ref|NM_190554.1| Oryza sativa (japonica cultivar-group), predic... 42 2.1
17ref|NM_192960.1| Oryza sativa (japonica cultivar-group), predic... 42 2.1
18emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 2.1
19ref|XM_389822.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 2.1
20emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in... 42 2.1
21dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 2.1
22gb|AE011767.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 2.1
23dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
24dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
25dbj|AK103094.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
26dbj|AK068901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
27dbj|AK059101.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
28gb|AF047697.1|AF047697 Oryza sativa putative high-pI laccase mRN... 42 2.1
29gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 2.1
30gb|AY364319.1| Felis catus chromosome A2 endogenous virus endoge... 40 8.1
31gb|AY364318.1| Felis catus chromosome A1 endogenous virus endoge... 40 8.1
32emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 8.1
33ref|XM_863193.1| PREDICTED: Canis familiaris hypothetical protei... 40 8.1
34emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chro... 40 8.1
35emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chr... 40 8.1
36gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, complete... 40 8.1
37dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
38gb|AC008313.3|AC008313 Drosophila melanogaster, chromosome 3R, r... 40 8.1
39dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
40gb|AE003676.4| Drosophila melanogaster chromosome 3R, section 14... 40 8.1
41gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
42emb|AL713907.3|CNS07YQ7 Oryza sativa chromosome 12, . BAC OJ1057... 40 8.1
43gb|L25632.1|FCVFELVAC Feline Leukemia Virus DNA sequence 40 8.1
44gb|M25425.1|CATFLVEP Cat endogenous proviral feline leukemia vir... 40 8.1 
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24
              map C535, complete sequence
          Length = 174759

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                   
Query: 246    aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggctcgg 298
              ||||| ||||||||||||||| | ||| ||||||| |||||||| ||||||||
Sbjct: 167411 aacccgatgcacctccatggctatgacgtgttcgtgctcgcgcaagggctcgg 167463



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 199    cggtggagatcgtgttccagagc 221
              |||||||||||||||||||||||
Sbjct: 167364 cggtggagatcgtgttccagagc 167386
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                    
Query: 246     aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggctcgg 298
               ||||| ||||||||||||||| | ||| ||||||| |||||||| ||||||||
Sbjct: 8850816 aacccgatgcacctccatggctatgacgtgttcgtgctcgcgcaagggctcgg 8850764



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 246      aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggct 295
                ||||||||||||||||||||| | ||| | ||| |||| |||||||||||
Sbjct: 24578346 aaccccatgcacctccatggctatgacgtcttcctccttgcgcaggggct 24578395



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 199     cggtggagatcgtgttccagagc 221
               |||||||||||||||||||||||
Sbjct: 8850863 cggtggagatcgtgttccagagc 8850841



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 246      aaccccatgcacctccatggc 266
                |||||||||||||||||||||
Sbjct: 24569654 aaccccatgcacctccatggc 24569674
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                    
Query: 246     aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggctcgg 298
               ||||| ||||||||||||||| | ||| ||||||| |||||||| ||||||||
Sbjct: 8922479 aacccgatgcacctccatggctatgacgtgttcgtgctcgcgcaagggctcgg 8922427



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 246      aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggct 295
                ||||||||||||||||||||| | ||| | ||| |||| |||||||||||
Sbjct: 24890016 aaccccatgcacctccatggctatgacgtcttcctccttgcgcaggggct 24890065



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 199     cggtggagatcgtgttccagagc 221
               |||||||||||||||||||||||
Sbjct: 8922526 cggtggagatcgtgttccagagc 8922504



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 246      aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggctcgg 298
                ||||||||||||||||||||| | ||  | ||| |||| || |||||||||||
Sbjct: 24881324 aaccccatgcacctccatggctatgatgtcttcctccttgcacaggggctcgg 24881376
to top
>gb|AF132119.1|AF132119 Pinus taeda laccase (Lac1) mRNA, complete cds
          Length = 2048

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                            
Query: 411  aatccaggtgtgtggttcctgcactgtcattt 442
            |||||||||||||||||| |||||||||||||
Sbjct: 1649 aatccaggtgtgtggttcatgcactgtcattt 1680
to top
>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0041L19, complete sequence
          Length = 155086

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 246   aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggct 295
             ||||||||||||||||||||| | ||| | ||| |||| |||||||||||
Sbjct: 55248 aaccccatgcacctccatggctatgacgtcttcctccttgcgcaggggct 55297



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 246   aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggctcgg 298
             ||||||||||||||||||||| | ||  | ||| |||| || |||||||||||
Sbjct: 46556 aaccccatgcacctccatggctatgatgtcttcctccttgcacaggggctcgg 46608
to top
>dbj|AK066963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093P21, full
            insert sequence
          Length = 2095

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 246  aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggct 295
            ||||||||||||||||||||| | ||| | ||| |||| |||||||||||
Sbjct: 1503 aaccccatgcacctccatggctatgacgtcttcctccttgcgcaggggct 1552
to top
>gb|AF465469.1| Lolium perenne laccase LAC2-1 mRNA, complete cds
          Length = 2056

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                     
Query: 252  atgcacctccatggccaggacatgttcgtcctcgcgcaggg 292
            ||||||||||||||||| ||| | ||||||||||| |||||
Sbjct: 1443 atgcacctccatggccacgacttcttcgtcctcgcccaggg 1483
to top
>ref|XM_467807.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1740

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 411  aatccaggtgtgtggttcctgcactgtcattttga 445
            |||||||||||||||||| |||| || ||||||||
Sbjct: 1603 aatccaggtgtgtggttcatgcattgccattttga 1637
to top
>ref|NM_196671.1| Oryza sativa (japonica cultivar-group) putative diphenol oxidase
            (OSJNBb0040I11.7), mRNA
          Length = 1404

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 411  aatccaggtgtgtggttcctgcactgtcattttga 445
            |||||||||||||||||| |||| || ||||||||
Sbjct: 1267 aatccaggtgtgtggttcatgcattgccattttga 1301
to top
>ref|NM_193864.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1800

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 411  aatccaggtgtgtggttcctgcactgtcattttga 445
            |||||||||||||||||| |||| || ||||||||
Sbjct: 1663 aatccaggtgtgtggttcatgcattgccattttga 1697
to top
>ref|NM_101674.3| Arabidopsis thaliana copper ion binding AT1G18140 mRNA, complete cds
          Length = 1931

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 329  gtacaacctggtggatccgccggtgaggaa 358
            ||||||| ||||||||||||||| ||||||
Sbjct: 1570 gtacaacttggtggatccgccggagaggaa 1599
to top
>gb|AF465470.1| Lolium perenne laccase LAC5-4 mRNA, complete cds
          Length = 2156

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 198  acggtggagatcgtgttccagagcccggtg 227
            ||||||||||||||| |||||| |||||||
Sbjct: 1381 acggtggagatcgtgctccagaacccggtg 1410
to top
>gb|AC034107.5|T10F20 Sequence of BAC T10F20 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 81129

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 329   gtacaacctggtggatccgccggtgaggaa 358
             ||||||| ||||||||||||||| ||||||
Sbjct: 45283 gtacaacttggtggatccgccggagaggaa 45254
to top
>gb|AC069551.4|AC069551 Genomic sequence for Arabidopsis thaliana BAC T10O22 from chromosome I,
             complete sequence
          Length = 92948

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 329   gtacaacctggtggatccgccggtgaggaa 358
             ||||||| ||||||||||||||| ||||||
Sbjct: 30587 gtacaacttggtggatccgccggagaggaa 30558
to top
>gb|U73105.1|LTU73105 Liriodendron tulipifera high-pI laccase (LAC2-3) mRNA, complete cds
          Length = 2030

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 411  aatccaggtgtgtggttcctgcactg 436
            |||||||||||||||||| |||||||
Sbjct: 1689 aatccaggtgtgtggttcatgcactg 1714
to top
>ref|NM_190554.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1734

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 414  ccaggtgtgtggttcctgcactgtcattt 442
            |||||||| |||||| |||||||||||||
Sbjct: 1600 ccaggtgtatggttcatgcactgtcattt 1628
to top
>ref|NM_192960.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1689

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 329  gtacaacctggtggatccgccggtgaggaacaccgtc 365
            ||||||||| || || ||||||| |||||||||||||
Sbjct: 1470 gtacaacctcgtcgacccgccggagaggaacaccgtc 1506
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 345     ccgccggtgaggaacaccgtc 365
               |||||||||||||||||||||
Sbjct: 1591830 ccgccggtgaggaacaccgtc 1591850
to top
>ref|XM_389822.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09646.1)
            partial mRNA
          Length = 1719

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 411  aatccaggtgtgtggttcctgcactgtca 439
            ||||||||||| ||| |||||||||||||
Sbjct: 1522 aatccaggtgtatggctcctgcactgtca 1550
to top
>emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in linkage group 22,
             complete sequence
          Length = 147994

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 397   gatttgtcaccaaaaatccag 417
             |||||||||||||||||||||
Sbjct: 74267 gatttgtcaccaaaaatccag 74247
to top
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 345     ccgccggtgaggaacaccgtc 365
               |||||||||||||||||||||
Sbjct: 1974386 ccgccggtgaggaacaccgtc 1974406
to top
>gb|AE011767.1| Xanthomonas axonopodis pv. citri str. 306,  section 145 of 469 of the
            complete genome
          Length = 11162

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 345  ccgccggtgaggaacaccgtc 365
            |||||||||||||||||||||
Sbjct: 4000 ccgccggtgaggaacaccgtc 4020
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 329      gtacaacctggtggatccgccggtgaggaacaccgtc 365
                ||||||||| || || ||||||| |||||||||||||
Sbjct: 25435522 gtacaacctcgtcgacccgccggagaggaacaccgtc 25435486



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 415      caggtgtgtggttcctgcactgtcattt 442
                ||||||| |||||| |||||||||||||
Sbjct: 36159539 caggtgtatggttcatgcactgtcattt 36159512
to top
>dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0663E10
          Length = 162297

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 329    gtacaacctggtggatccgccggtgaggaacaccgtc 365
              ||||||||| || || ||||||| |||||||||||||
Sbjct: 125522 gtacaacctcgtcgacccgccggagaggaacaccgtc 125486
to top
>dbj|AK103094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118K21, full
            insert sequence
          Length = 2065

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 246  aaccccatgcacctccatggc 266
            |||||||||||||||||||||
Sbjct: 1529 aaccccatgcacctccatggc 1549
to top
>dbj|AK068901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170B10, full
            insert sequence
          Length = 2066

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 414  ccaggtgtgtggttcctgcactgtcattt 442
            |||||||| |||||| |||||||||||||
Sbjct: 1716 ccaggtgtatggttcatgcactgtcattt 1744
to top
>dbj|AK059101.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D01, full
           insert sequence
          Length = 644

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 414 ccaggtgtgtggttcctgcactgtcattt 442
           |||||||| |||||| |||||||||||||
Sbjct: 292 ccaggtgtatggttcatgcactgtcattt 320
to top
>gb|AF047697.1|AF047697 Oryza sativa putative high-pI laccase mRNA, partial cds
          Length = 1874

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 414  ccaggtgtgtggttcctgcactgtcattt 442
            |||||||| |||||| |||||||||||||
Sbjct: 1522 ccaggtgtatggttcatgcactgtcattt 1550
to top
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 345     ccgccggtgaggaacaccgtc 365
               |||||||||||||||||||||
Sbjct: 1996433 ccgccggtgaggaacaccgtc 1996453
to top
>gb|AY364319.1| Felis catus chromosome A2 endogenous virus endogenous feline leukemia
            virus enFeLV-GGAG, complete sequence
          Length = 9867

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 243  gctaaccccatgcacctccatggc 266
            |||||||||||||| |||||||||
Sbjct: 7931 gctaaccccatgcatctccatggc 7954
to top
>gb|AY364318.1| Felis catus chromosome A1 endogenous virus endogenous feline leukemia
            virus enFeLV-AGTT, complete sequence
          Length = 9895

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 243  gctaaccccatgcacctccatggc 266
            |||||||||||||| |||||||||
Sbjct: 7944 gctaaccccatgcatctccatggc 7967
to top
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 322     tcgcgacgtacaacctggtg 341
               ||||||||||||||||||||
Sbjct: 1635801 tcgcgacgtacaacctggtg 1635820
to top
>ref|XM_863193.1| PREDICTED: Canis familiaris hypothetical protein LOC611444
           (LOC611444), mRNA
          Length = 690

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 cctcgcgcaggggctcgggc 300
           ||||||||||||||||||||
Sbjct: 386 cctcgcgcaggggctcgggc 405
to top
>emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chromosome 10 Contains two
             novel genes, the 5'end of the gene for VPS10 domain
             receptor protein SORCS 3 (SORCS3) and a CpG island,
             complete sequence
          Length = 153764

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 494   tccaactttggattcgactcttcc 517
             |||||||||||||| |||||||||
Sbjct: 91717 tccaactttggatttgactcttcc 91740
to top
>emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chromosome 10 Contains two
              novel genes, the 5'end of the gene for VPS10 domain
              receptor protein SORCS 3 (SORCS3) and one CpG island,
              complete sequence
          Length = 183833

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 494    tccaactttggattcgactcttcc 517
              |||||||||||||| |||||||||
Sbjct: 177860 tccaactttggatttgactcttcc 177883
to top
>gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, complete cds
          Length = 2090

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 411  aatccaggtgtgtggttcctgcactgtcattt 442
            |||||||| || |||||| |||||||||||||
Sbjct: 1675 aatccaggggtttggttcatgcactgtcattt 1706
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 181      ggctgcggtacaatgccacggtgg 204
                ||||| ||||||||||||||||||
Sbjct: 16376890 ggctgtggtacaatgccacggtgg 16376913
to top
>gb|AC008313.3|AC008313 Drosophila melanogaster, chromosome 3R, region 84D-84E, BAC clone
             BACR11D12, complete sequence
          Length = 189596

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    taacatgagcagcattagca 93
             ||||||||||||||||||||
Sbjct: 63289 taacatgagcagcattagca 63308
to top
>dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406G08
          Length = 144233

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 415   caggtgtgtggttcctgcactgtcattt 442
             ||||||| |||||| |||||||||||||
Sbjct: 36552 caggtgtatggttcatgcactgtcattt 36525
to top
>gb|AE003676.4| Drosophila melanogaster chromosome 3R, section 14 of 118 of the complete
              sequence
          Length = 267607

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     taacatgagcagcattagca 93
              ||||||||||||||||||||
Sbjct: 139828 taacatgagcagcattagca 139847
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 181      ggctgcggtacaatgccacggtgg 204
                ||||| ||||||||||||||||||
Sbjct: 16330123 ggctgtggtacaatgccacggtgg 16330146
to top
>emb|AL713907.3|CNS07YQ7 Oryza sativa chromosome 12, . BAC OJ1057_E03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127989

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 181   ggctgcggtacaatgccacggtgg 204
             ||||| ||||||||||||||||||
Sbjct: 75501 ggctgtggtacaatgccacggtgg 75478
to top
>gb|L25632.1|FCVFELVAC Feline Leukemia Virus DNA sequence
          Length = 2378

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 243  gctaaccccatgcacctccatggc 266
            |||||||||||||| |||||||||
Sbjct: 1258 gctaaccccatgcatctccatggc 1281
to top
>gb|M25425.1|CATFLVEP Cat endogenous proviral feline leukemia virus envelope protein gene,
            complete cds
          Length = 2615

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 243  gctaaccccatgcacctccatggc 266
            |||||||||||||| |||||||||
Sbjct: 1318 gctaaccccatgcatctccatggc 1341


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,552,509
Number of Sequences: 3902068
Number of extensions: 3552509
Number of successful extensions: 68224
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67853
Number of HSP's gapped (non-prelim): 369
length of query: 597
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 574
effective length of database: 17,143,297,704
effective search space: 9840252882096
effective search space used: 9840252882096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top