ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags37c18 |
|---|---|
| Clone Library Name | barley_pub |
>RPOC1_CUCSA (Q4VZP2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 680 Score = 36.6 bits (83), Expect = 0.068 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*L 375 I+Q + GH +LL+R+ +LG+Q + ++C LV K +D+ QM + Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499 Query: 376 PPSWQNQWNTAIEGRLIVTLSVPKV-SAVGD 465 P SW+ Q E RL++ + + SA+GD Sbjct: 500 PLSWEAQ----AEARLLMFSHMNLLSSAIGD 526
>RPOC1_SOLTU (Q2VEI5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 687 Score = 34.7 bits (78), Expect = 0.26 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 4/133 (3%) Frame = +1 Query: 79 PREPSDVFLALFVNPAAHPAQAVLPVTVFRSKKMENK---LNIVQ*FLLGHQMLLSRSVN 249 PRE + FV + V +SK E + I+Q + GH +LL+R+ Sbjct: 404 PREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPT 463 Query: 250 SGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*LPPSWQNQWNTAIEGRLIV 429 +LG+Q V ++C LV K +D+ QM+ +P S + Q +E RL++ Sbjct: 464 LHRLGIQAFQPVLVEGRAICLHPLVCKGFHADFDGDQMDFKVPLSLEAQ----VEARLLM 519 Query: 430 TLSVPKVS-AVGD 465 + +S A+GD Sbjct: 520 FSHMNLLSPAIGD 532
>RPOC1_TOBAC (P12116) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 680 Score = 33.9 bits (76), Expect = 0.44 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Frame = +1 Query: 79 PREPSDVFLALFVNPAAHPAQAVLPVTVFRSKKMENK---LNIVQ*FLLGHQMLLSRSVN 249 PRE + FV + V +SK E + I+Q + GH +LL+R+ Sbjct: 397 PREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPT 456 Query: 250 SGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*LPPSWQNQWNTAIEGRLIV 429 +LG+Q V ++C LV K +D+ QM +P S + Q +E RL++ Sbjct: 457 LHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ----VEARLLM 512 Query: 430 TLSVPKVS-AVGD 465 + +S A+GD Sbjct: 513 FSHMNLLSPAIGD 525
>RPOC1_NICSY (Q3C1G8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 681 Score = 33.9 bits (76), Expect = 0.44 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Frame = +1 Query: 79 PREPSDVFLALFVNPAAHPAQAVLPVTVFRSKKMENK---LNIVQ*FLLGHQMLLSRSVN 249 PRE + FV + V +SK E + I+Q + GH +LL+R+ Sbjct: 398 PREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPT 457 Query: 250 SGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*LPPSWQNQWNTAIEGRLIV 429 +LG+Q V ++C LV K +D+ QM +P S + Q +E RL++ Sbjct: 458 LHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ----VEARLLM 513 Query: 430 TLSVPKVS-AVGD 465 + +S A+GD Sbjct: 514 FSHMNLLSPAIGD 526
>RPOC1_ATRBE (Q8S8Y0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 681 Score = 33.9 bits (76), Expect = 0.44 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Frame = +1 Query: 79 PREPSDVFLALFVNPAAHPAQAVLPVTVFRSKKMENK---LNIVQ*FLLGHQMLLSRSVN 249 PRE + FV + V +SK E + I+Q + GH +LL+R+ Sbjct: 398 PREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPT 457 Query: 250 SGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*LPPSWQNQWNTAIEGRLIV 429 +LG+Q V ++C LV K +D+ QM +P S + Q +E RL++ Sbjct: 458 LHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ----VEARLLM 513 Query: 430 TLSVPKVS-AVGD 465 + +S A+GD Sbjct: 514 FSHMNLLSPAIGD 526
>GP10_DICDI (Q06885) Glycoprotein gp100 precursor (P29F8)| Length = 544 Score = 32.7 bits (73), Expect = 0.98 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = -1 Query: 301 SKSWH-LHNPETVPQVVLS*QNGSRASDVPTEIIELYSTYF 182 SKS+H L +P+T +LS N S S V EIIE+ S YF Sbjct: 397 SKSYHTLSSPKTTNTTMLSFINNSPNSTVSNEIIEMISGYF 437
>RPOC1_NICTO (Q33C47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 681 Score = 32.7 bits (73), Expect = 0.98 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*L 375 I+Q + GH +LL+R+ +LG+Q V ++C LV K +D+ QM + Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVAGRAICLHPLVCKGFNADFDGDQMAVHV 499 Query: 376 PPSWQNQWNTAIEGRLIVTLSVPKVS-AVGD 465 P S + Q +E RL++ + +S A+GD Sbjct: 500 PLSLEAQ----VEARLLMFSHMNLLSPAIGD 526
>RPOC1_SINAL (P46819) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 688 Score = 32.0 bits (71), Expect = 1.7 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Frame = +1 Query: 79 PREPSDVFLALFVNPAAHPAQAVLPVTVFRSKKMENK---LNIVQ*FLLGHQMLLSRSVN 249 PRE + FV + V +S+ E K I+Q + GH +LL+R+ Sbjct: 406 PREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPT 465 Query: 250 SGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*LPPSWQNQWNTAIEGRLIV 429 +LG+Q + ++C LV K +D+ QM +P S + Q E RL++ Sbjct: 466 LHRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ----AEARLLM 521 Query: 430 TLSVPKVS-AVGD 465 + +S A+GD Sbjct: 522 FSHMNLLSPAIGD 534
>RPOC1_ARATH (P56763) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 680 Score = 32.0 bits (71), Expect = 1.7 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Frame = +1 Query: 79 PREPSDVFLALFVNPAAHPAQAVLPVTVFRSKKMENK---LNIVQ*FLLGHQMLLSRSVN 249 PRE + FV + V +S+ E K I+Q + GH +LL+R+ Sbjct: 398 PREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPT 457 Query: 250 SGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*LPPSWQNQWNTAIEGRLIV 429 +LG+Q + ++C LV K +D+ QM +P S + Q E RL++ Sbjct: 458 LHRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ----AEARLLM 513 Query: 430 TLSVPKVS-AVGD 465 + +S A+GD Sbjct: 514 FSHMNLLSPAIGD 526
>RPOC1_ACOGR (Q5QA71) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 682 Score = 32.0 bits (71), Expect = 1.7 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*L 375 I+Q + GH +LL+R+ +LG+Q V ++C LV K +D+ QM + Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 499 Query: 376 PPSWQNQWNTAIEGRLIVTLSVPKVS-AVGD 465 P S + Q E RL++ + +S A+GD Sbjct: 500 PLSLEAQ----AEARLLMFSHMNLLSPAIGD 526
>RPOC1_ACOCL (Q3V543) DNA-directed RNA polymerase gamma chain (EC 2.7.7.6) (RNAP| gamma subunit) (Transcriptase gamma chain) (RNA polymerase gamma subunit) Length = 682 Score = 32.0 bits (71), Expect = 1.7 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*L 375 I+Q + GH +LL+R+ +LG+Q V ++C LV K +D+ QM + Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 499 Query: 376 PPSWQNQWNTAIEGRLIVTLSVPKVS-AVGD 465 P S + Q E RL++ + +S A+GD Sbjct: 500 PLSLEAQ----AEARLLMFSHMNLLSPAIGD 526
>RPOC1_SACOF (Q6ENX2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 683 Score = 31.6 bits (70), Expect = 2.2 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*L 375 I+Q + GH +LL+R+ +LG+Q ++C LV K +D+ QM L Sbjct: 440 ILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKGFNADFDGDQMAVHL 499 Query: 376 PPSWQNQWNTAIEGRLIVTLSVPKVS-AVGD 465 P S + Q E RL++ + +S A+GD Sbjct: 500 PLSLEAQ----AEARLLMFSHMNLLSPAIGD 526
>RPOC1_SACHY (Q6L3A6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 683 Score = 31.6 bits (70), Expect = 2.2 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*L 375 I+Q + GH +LL+R+ +LG+Q ++C LV K +D+ QM L Sbjct: 440 ILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKGFNADFDGDQMAVHL 499 Query: 376 PPSWQNQWNTAIEGRLIVTLSVPKVS-AVGD 465 P S + Q E RL++ + +S A+GD Sbjct: 500 PLSLEAQ----AEARLLMFSHMNLLSPAIGD 526
>RPOC1_MAIZE (P16024) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 683 Score = 31.6 bits (70), Expect = 2.2 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*L 375 I+Q + GH +LL+R+ +LG+Q ++C LV K +D+ QM L Sbjct: 440 ILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKGFNADFDGDQMAVHL 499 Query: 376 PPSWQNQWNTAIEGRLIVTLSVPKVS-AVGD 465 P S + Q E RL++ + +S A+GD Sbjct: 500 PLSLEAQ----AEARLLMFSHMNLLSPAIGD 526
>RPOC1_SPIOL (P11705) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 677 Score = 31.6 bits (70), Expect = 2.2 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*L 375 I+Q + GH +LL+R+ +LG+Q + ++C LV K +D+ QM + Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499 Query: 376 PPSWQNQWNTAIEGRLIVTLSVPKVS-AVGD 465 P S + Q E RL++ + +S A+GD Sbjct: 500 PLSLEAQ----AEARLLMFSHMNLLSPAIGD 526
>RPOC1_SILLA (Q589B9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 687 Score = 31.6 bits (70), Expect = 2.2 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*L 375 I+Q + GH +LL+R+ +LG+Q + ++C LV K +D+ QM + Sbjct: 443 ILQEVMQGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 502 Query: 376 PPSWQNQWNTAIEGRLIVTLSVPKVS-AVGD 465 P S + Q E RL++ + +S A+GD Sbjct: 503 PLSLEAQ----TEARLLMFSHMNLLSPAIGD 529
>RPOC1_PANGI (Q68S15) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 682 Score = 31.6 bits (70), Expect = 2.2 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Frame = +1 Query: 79 PREPSDVFLALFVNPAAHPAQAVLPVTVFRSKKMENK---LNIVQ*FLLGHQMLLSRSVN 249 PRE + FV + V +SK E + I+Q + GH +LL+R+ Sbjct: 398 PREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPT 457 Query: 250 SGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*LPPSWQNQWNTAIEGRLIV 429 +LG+Q V ++C LV K +D+ QM +P S + Q E RL++ Sbjct: 458 LHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQ----AEARLLM 513 Query: 430 TLSVPKVS-AVGD 465 + +S A+GD Sbjct: 514 FSHMNLLSPAIGD 526
>RPOC1_ORYSA (P12092) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 682 Score = 31.6 bits (70), Expect = 2.2 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*L 375 I+Q + GH +LL+R+ +LG+Q ++C LV K +D+ QM L Sbjct: 440 ILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKGFNADFDGDQMAVHL 499 Query: 376 PPSWQNQWNTAIEGRLIVTLSVPKVS-AVGD 465 P S + Q E RL++ + +S A+GD Sbjct: 500 PLSLEAQ----AEARLLMFSHMNLLSPAIGD 526
>RPOC1_ORYNI (Q6ENI3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 682 Score = 31.6 bits (70), Expect = 2.2 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*L 375 I+Q + GH +LL+R+ +LG+Q ++C LV K +D+ QM L Sbjct: 440 ILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKGFNADFDGDQMAVHL 499 Query: 376 PPSWQNQWNTAIEGRLIVTLSVPKVS-AVGD 465 P S + Q E RL++ + +S A+GD Sbjct: 500 PLSLEAQ----AEARLLMFSHMNLLSPAIGD 526
>RPOC1_PHAAO (Q3BAQ1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 679 Score = 31.6 bits (70), Expect = 2.2 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*L 375 I+Q + GH +LL+R+ +LG+Q + ++C LV K +D+ QM + Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499 Query: 376 PPSWQNQWNTAIEGRLIVTLSVPKVS-AVGD 465 P S + Q E RL++ + +S A+GD Sbjct: 500 PLSLEAQ----AEARLLMFSHMNLLSPAIGD 526
>RPOC1_SOYBN (Q8HVY4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 687 Score = 31.2 bits (69), Expect = 2.8 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*L 375 I+Q + GH +LL+R+ +LG+Q + ++C LV K +D+ QM + Sbjct: 442 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 501 Query: 376 PPSWQNQWNTAIEGRLIVTLSVPKVS-AVGD 465 P S + Q E RL++ +S A+GD Sbjct: 502 PLSLEAQ----AEARLLMFSHTNLLSPAIGD 528
>RPOC1_NYMAL (Q6EW57) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 684 Score = 31.2 bits (69), Expect = 2.8 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*L 375 I+Q + GH +LL+R+ +LG+Q + ++C LV K +D+ QM + Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499 Query: 376 PPSWQNQWNTAIEGRLIVTLSVPKVS-AVGD 465 P S + Q E RL++ +S A+GD Sbjct: 500 PLSLEAQ----AEARLLMFSHTNLLSPAIGD 526
>RPOC1_LOTJA (Q9BBS8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 682 Score = 31.2 bits (69), Expect = 2.8 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*L 375 I+Q + GH +LL+R+ +LG+Q + ++C LV K +D+ QM + Sbjct: 442 ILQEVMRGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAIHV 501 Query: 376 PPSWQNQWNTAIEGRLIVTLSVPKVS-AVGD 465 P S + Q E RL++ +S A+GD Sbjct: 502 PLSLEAQ----AEARLLMFSHTNLLSPAIGD 528
>RPOC1_EUCGG (Q49L07) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 682 Score = 31.2 bits (69), Expect = 2.8 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Frame = +1 Query: 79 PREPSDVFLALFVNPAAHPAQAVLPVTVFRSKKMENK---LNIVQ*FLLGHQMLLSRSVN 249 PRE + FV + V +SK E + I+Q + GH +LL+R+ Sbjct: 398 PREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPT 457 Query: 250 SGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*LPPSWQNQWNTAIEGRLIV 429 +LG+Q + ++C LV K +D+ QM +P S + Q E RL++ Sbjct: 458 LHRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQ----AEARLLM 513 Query: 430 TLSVPKVS-AVGD 465 + +S A+GD Sbjct: 514 FSHMNLLSPAIGD 526
>RPOC1_AMBTC (P60287) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 680 Score = 30.8 bits (68), Expect = 3.7 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Frame = +1 Query: 79 PREPSDVFLALFVNPAAHPAQAVLPVTVFRSKKMENK---LNIVQ*FLLGHQMLLSRSVN 249 PRE + FV + + +SK E + I+Q + GH +LL+R+ Sbjct: 398 PREIAIELFQTFVIRGLIRQHVASNIGIAKSKIREKEPIVWEILQKVMEGHPVLLNRAPT 457 Query: 250 SGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*LPPSWQNQWNTAIEGRLIV 429 +LG+Q + ++C LV K +D+ QM +P S + Q E RL++ Sbjct: 458 LHRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQ----AEARLLM 513 Query: 430 TLSVPKVS-AVGD 465 + +S A+GD Sbjct: 514 FSHMNLLSPAIGD 526
>RPOC1_CALFE (Q7YJX9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 678 Score = 29.6 bits (65), Expect = 8.3 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Frame = +1 Query: 79 PREPSDVFLALFVNPAAHPAQAVLPVTVFRSKKMENK---LNIVQ*FLLGHQMLLSRSVN 249 PRE + FV + + +SK E + I+Q + GH +LL+R+ Sbjct: 398 PREIAIELFQTFVIRGLIRQHVASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPT 457 Query: 250 SGQLGVQFQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC*LPPSWQNQWNTAIEGRLIV 429 +LG+Q + ++C LV K +D+ QM +P S + Q E RL++ Sbjct: 458 LHRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQ----AEARLLM 513
>RPOC1_OENHO (Q9MTM4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 679 Score = 29.6 bits (65), Expect = 8.3 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Frame = +1 Query: 196 IVQ*FLLGHQMLLSRSVNSGQLGVQ-FQDYVNANFWSLCPFGLVIKTLASDYVKRQMNC* 372 I+Q + GH +LL+R+ +LG+Q FQ ++ ++C LV K +D+ QM Sbjct: 440 ILQQVMQGHPVLLNRAPTLHRLGIQAFQPFL-VKGDAICLHPLVCKGFNADFDGDQMAVH 498 Query: 373 LPPSWQNQWNTAIEGRLIVTLSVPKVS-AVGD 465 +P S + Q E RL++ + +S A+GD Sbjct: 499 VPLSLEAQ----TEARLLMFSHMNLLSPAMGD 526
>LV1C_HUMAN (P01701) Ig lambda chain V-I region NEW| Length = 111 Score = 29.6 bits (65), Expect = 8.3 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 310 GTNSKSWHLHNPETVPQVVLS*QNGSRASDVPTEI 206 G N SWH H P T P++++ ++ R S +P I Sbjct: 30 GNNYVSWHQHLPGTAPKLLIY-EDNKRPSGIPDRI 63 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,738,028 Number of Sequences: 219361 Number of extensions: 1464933 Number of successful extensions: 3175 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3175 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
