ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags37c18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF466200.2| Sorghum bicolor putative protein kinase gene, par... 163 9e-37
2gb|AY555143.1| Zea may BAC clone c573L14, complete sequence 135 2e-28
3dbj|AK103238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 4e-17
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
5dbj|AP003896.3| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
6dbj|AP005620.3| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
7gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.58
8gb|AC138000.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.58
9gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.58
10gb|AC129225.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.58
11emb|AL136128.9| Human DNA sequence from clone RP1-84N20 on chrom... 44 0.58
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.58
13dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.58
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.58
15dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.58
16dbj|AK103150.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.58
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.58
18gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.58
19emb|AL713945.5|CNS07YPO Oryza sativa chromosome 12, . BAC OJ1727... 44 0.58
20emb|AL731891.2|CNS08C8V Oryza sativa chromosome 12, . BAC OJ1374... 44 0.58
21ref|XM_479755.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.3
22gb|AC109585.4| Homo sapiens chromosome 3 clone RP11-802J21, comp... 42 2.3
23gb|AC121855.3| Mus musculus BAC clone RP24-97C18 from chromosome... 42 2.3
24gb|AC108486.2| Homo sapiens chromosome 3 clone RP11-114C6, compl... 42 2.3
25gb|AC154220.1| Mus musculus BAC clone RP24-364C6 from chromosome... 42 2.3
26dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
27dbj|AK069503.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
28emb|BX005435.16| Zebrafish DNA sequence from clone CH211-154E15 ... 42 2.3
29tpe|BN000646.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 42 2.3
30gb|AC122860.5| Mus musculus BAC clone RP23-135A22 from 12, compl... 42 2.3
31emb|CR626962.9| Zebrafish DNA sequence from clone CH211-15D5 in ... 42 2.3
32ref|NM_117416.2| Arabidopsis thaliana HAK5; potassium ion transp... 40 9.0
33ref|NM_005599.2| Homo sapiens nescient helix loop helix 2 (NHLH2... 40 9.0
34gb|AC121146.8| Mus musculus chromosome 3, clone RP24-297G3, comp... 40 9.0
35gb|AC135361.3| Mus musculus BAC clone RP23-216A21 from chromosom... 40 9.0
36gb|AC140199.2| Mus musculus BAC clone RP23-480D7 from chromosome... 40 9.0
37gb|AC121978.2| Mus musculus BAC clone RP24-289K21 from 14, compl... 40 9.0
38gb|BT010589.1| Arabidopsis thaliana At4g13420 gene, complete cds 40 9.0
39gb|U41279.1| Caenorhabditis elegans cosmid C17C3, complete sequence 40 9.0
40emb|AL449264.18| Human DNA sequence from clone RP11-485H8 on chr... 40 9.0
41emb|AL731825.1|BTPBTOXIS Bacillus thuringiensis subsp. israelens... 40 9.0
42emb|AL356173.2|NCB14D6 Neurospora crassa DNA linkage group II BA... 40 9.0
43emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosome 4, ... 40 9.0
44emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4, BAC... 40 9.0
45emb|CR450704.7| Zebrafish DNA sequence from clone DKEY-65O14 in ... 40 9.0
46gb|BC028729.1| Homo sapiens cDNA clone IMAGE:4811590 40 9.0
47gb|BC096361.1| Homo sapiens nescient helix loop helix 2, mRNA (c... 40 9.0
48gb|BC096359.1| Homo sapiens nescient helix loop helix 2, mRNA (c... 40 9.0
49gb|BC096362.1| Homo sapiens nescient helix loop helix 2, mRNA (c... 40 9.0
50gb|BC096360.1| Homo sapiens nescient helix loop helix 2, mRNA (c... 40 9.0
51emb|BX544876.8| Zebrafish DNA sequence from clone CH211-167B20 i... 40 9.0
52dbj|AK056621.1| Homo sapiens cDNA FLJ32059 fis, clone NTONG20016... 40 9.0
53gb|AF345635.1| Mus musculus pirin gene, partial cds; and VEGF-D ... 40 9.0
54dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
55dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
56gb|AC004082.1|AC004082 Homo sapiens PAC clone RP5-897G10 from 7q... 40 9.0
57emb|CR376826.12| Zebrafish DNA sequence from clone DKEYP-78F1 in... 40 9.0
58gb|AF129478.1| Arabidopsis thaliana cultivar Columbia K+ transpo... 40 9.0
59gb|M97508.1|HUMHEN2A Homo sapiens helix-loop-helix protein (HEN2... 40 9.0
60emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chr... 40 9.0
61gb|M96740.1|HUMNSCL2A Human NSCL-2 gene sequence 40 9.0
62dbj|AB007959.1| Homo sapiens mRNA, chromosome 1 specific transcr... 40 9.0 
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative
             Cf-2, fertilization-independent endosperm proteins,
             hypothetical protein, putative non-LTR retroelement
             reverse transcriptase, OCL5 protein, tryptophan synthase
             beta-subunit, hypothetical proteins, putative AP
             endonuclease, putative RNA polymerase II complex component
             SRB7, putative beta-1,3-glucanase, hypothetical protein,
             TNP2-like protein, hypothetical protein, putative
             phosphate/phosphoenolpyruvate translocator, putative
             protein, hypothetical proteins, putative
             galactosyltransferase family, hypothetical protein,
             putative cytochrome P450 family, putative lipid transfer
             protein, putative photoreceptor-interacting protein, and
             hypothetical protein genes, complete cds; and hypothetical
             protein gene, partial cds
          Length = 202197

 Score =  163 bits (82), Expect = 9e-37
 Identities = 127/142 (89%)
 Strand = Plus / Minus

                                                                         
Query: 275   aggattatgtaaatgccaacttttggagtttgtgcccttttggtttagtcatcaagacac 334
             |||||| |||||||||||  ||||||||||| || ||||||||||||||| ||||||| |
Sbjct: 91729 aggattttgtaaatgccactttttggagtttctggccttttggtttagtcctcaagactc 91670

                                                                         
Query: 335   tagctagcgattatgtaaagagacaaatgaactgttaattgccaccaagttggcaaaatc 394
             |||||||| ||||| |||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 91669 tagctagcaattatctaaagaaacaaatgaaatgttaattgccaccaagttggcaaaatc 91610

                                   
Query: 395   aatggaacacagcaattgaggg 416
               ||||| |||||| |||||||
Sbjct: 91609 cctggaaaacagcagttgaggg 91588
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>gb|AY555143.1| Zea may BAC clone c573L14, complete sequence
          Length = 144792

 Score =  135 bits (68), Expect = 2e-28
 Identities = 101/112 (90%)
 Strand = Plus / Minus

                                                                         
Query: 282   tgtaaatgccaacttttggagtttgtgcccttttggtttagtcatcaagacactagctag 341
             |||||||||||  ||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 83364 tgtaaatgccactttttggagtttctggccttttggtttagtcatcaagactctagctag 83305

                                                                 
Query: 342   cgattatgtaaagagacaaatgaactgttaattgccaccaagttggcaaaat 393
             | ||||| |||||| ||||||||| || |||||||||||||| |||||||||
Sbjct: 83304 caattatctaaagaaacaaatgaaatgctaattgccaccaagatggcaaaat 83253
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>dbj|AK103238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123G15, full
           insert sequence
          Length = 744

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 119/142 (83%), Gaps = 9/142 (6%)
 Strand = Plus / Plus

                                                                       
Query: 273 tcaggattatgtaaatgccaacttttggagtttgtgcccttttggtttag-------tca 325
           ||||||||||||||||||||  ||||||||| | ||||||||||||||||       || 
Sbjct: 224 tcaggattatgtaaatgccactttttggagtgtctgcccttttggtttagtctccattcc 283

                                                                       
Query: 326 tcaagacactagctagcgattatgtaaagagacaaa--tgaactgttaattgccaccaag 383
           |||||||  |||||||| ||||| |||||| | |||  ||||||||||||||||||||||
Sbjct: 284 tcaagactatagctagcaattatataaagaaaaaaaattgaactgttaattgccaccaag 343

                                 
Query: 384 ttggcaaaatcaatggaacaca 405
           | |||||||||  |||||||||
Sbjct: 344 tcggcaaaatcgctggaacaca 365
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 118/141 (83%), Gaps = 9/141 (6%)
 Strand = Plus / Plus

                                                                           
Query: 274     caggattatgtaaatgccaacttttggagtttgtgcccttttggtttagtca-------t 326
               |||||||||||||||||||  ||||||||| | ||||||||||||||||||        |
Sbjct: 2014304 caggattatgtaaatgccactttttggagtgtctgcccttttggtttagtctccattcct 2014363

                                                                           
Query: 327     caagacactagctagcgattatgtaaagagacaaa--tgaactgttaattgccaccaagt 384
               ||||||  |||||||| ||||| |||||| | |||  |||||||||||||||||||||||
Sbjct: 2014364 caagactatagctagcaattatataaagaaaaaaaattgaactgttaattgccaccaagt 2014423

                                    
Query: 385     tggcaaaatcaatggaacaca 405
                |||||||||  |||||||||
Sbjct: 2014424 cggcaaaatcgctggaacaca 2014444



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 31     cctcctccccgtcgccacgcc 51
              |||||||||||||||||||||
Sbjct: 691335 cctcctccccgtcgccacgcc 691315
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>dbj|AP003896.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1613_G04
          Length = 135357

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 118/141 (83%), Gaps = 9/141 (6%)
 Strand = Plus / Plus

                                                                        
Query: 274  caggattatgtaaatgccaacttttggagtttgtgcccttttggtttagtca-------t 326
            |||||||||||||||||||  ||||||||| | ||||||||||||||||||        |
Sbjct: 7834 caggattatgtaaatgccactttttggagtgtctgcccttttggtttagtctccattcct 7893

                                                                        
Query: 327  caagacactagctagcgattatgtaaagagacaaa--tgaactgttaattgccaccaagt 384
            ||||||  |||||||| ||||| |||||| | |||  |||||||||||||||||||||||
Sbjct: 7894 caagactatagctagcaattatataaagaaaaaaaattgaactgttaattgccaccaagt 7953

                                 
Query: 385  tggcaaaatcaatggaacaca 405
             |||||||||  |||||||||
Sbjct: 7954 cggcaaaatcgctggaacaca 7974
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>dbj|AP005620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0680F05
          Length = 185495

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 118/141 (83%), Gaps = 9/141 (6%)
 Strand = Plus / Plus

                                                                          
Query: 274    caggattatgtaaatgccaacttttggagtttgtgcccttttggtttagtca-------t 326
              |||||||||||||||||||  ||||||||| | ||||||||||||||||||        |
Sbjct: 139502 caggattatgtaaatgccactttttggagtgtctgcccttttggtttagtctccattcct 139561

                                                                          
Query: 327    caagacactagctagcgattatgtaaagagacaaa--tgaactgttaattgccaccaagt 384
              ||||||  |||||||| ||||| |||||| | |||  |||||||||||||||||||||||
Sbjct: 139562 caagactatagctagcaattatataaagaaaaaaaattgaactgttaattgccaccaagt 139621

                                   
Query: 385    tggcaaaatcaatggaacaca 405
               |||||||||  |||||||||
Sbjct: 139622 cggcaaaatcgctggaacaca 139642
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>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091I11,
              complete sequence
          Length = 135993

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 3      cgacgccgcctccgccgtcccg 24
              ||||||||||||||||||||||
Sbjct: 124422 cgacgccgcctccgccgtcccg 124443
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>gb|AC138000.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0024M06, complete sequence
          Length = 51144

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 3     cgacgccgcctccgccgtcccg 24
             ||||||||||||||||||||||
Sbjct: 50931 cgacgccgcctccgccgtcccg 50910
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>gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0029P13, complete sequence
          Length = 158506

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 418   agactaattgtcactttgtcag 439
             ||||||||||||||||||||||
Sbjct: 63610 agactaattgtcactttgtcag 63589
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>gb|AC129225.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
            OSJNBa0051D10, complete sequence
          Length = 140272

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 418  agactaattgtcactttgtcag 439
            ||||||||||||||||||||||
Sbjct: 9145 agactaattgtcactttgtcag 9166
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>emb|AL136128.9| Human DNA sequence from clone RP1-84N20 on chromosome 6 Contains a
             novel gene, the 5' end of the TPD52L1 gene encoding two
             variants of tumor protein D52-like 1 protein and two CpG
             islands, complete sequence
          Length = 151875

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 388   caaaatcaatggaacacagcaa 409
             ||||||||||||||||||||||
Sbjct: 82971 caaaatcaatggaacacagcaa 82950
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 418      agactaattgtcactttgtcag 439
                ||||||||||||||||||||||
Sbjct: 26594365 agactaattgtcactttgtcag 26594386
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 418      agactaattgtcactttgtcag 439
                ||||||||||||||||||||||
Sbjct: 25336597 agactaattgtcactttgtcag 25336576



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 3       cgacgccgcctccgccgtcccg 24
               ||||||||||||||||||||||
Sbjct: 7665336 cgacgccgcctccgccgtcccg 7665357
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
             complete sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 418   agactaattgtcactttgtcag 439
             ||||||||||||||||||||||
Sbjct: 65521 agactaattgtcactttgtcag 65542
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>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1026C12
          Length = 170240

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 418   agactaattgtcactttgtcag 439
             ||||||||||||||||||||||
Sbjct: 64820 agactaattgtcactttgtcag 64841
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>dbj|AK103150.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033120N24, full
            insert sequence
          Length = 2347

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 418  agactaattgtcactttgtcag 439
            ||||||||||||||||||||||
Sbjct: 1172 agactaattgtcactttgtcag 1151
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 418      agactaattgtcactttgtcag 439
                ||||||||||||||||||||||
Sbjct: 25655267 agactaattgtcactttgtcag 25655246



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 3       cgacgccgcctccgccgtcccg 24
               ||||||||||||||||||||||
Sbjct: 7735423 cgacgccgcctccgccgtcccg 7735444
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 418      agactaattgtcactttgtcag 439
                ||||||||||||||||||||||
Sbjct: 26522534 agactaattgtcactttgtcag 26522555
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>emb|AL713945.5|CNS07YPO Oryza sativa chromosome 12, . BAC OJ1727_H11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 85710

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 418   agactaattgtcactttgtcag 439
             ||||||||||||||||||||||
Sbjct: 64372 agactaattgtcactttgtcag 64393
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>emb|AL731891.2|CNS08C8V Oryza sativa chromosome 12, . BAC OJ1374_A04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 101173

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 418   agactaattgtcactttgtcag 439
             ||||||||||||||||||||||
Sbjct: 13235 agactaattgtcactttgtcag 13256
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>ref|XM_479755.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1398

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 31  cctcctccccgtcgccacgcc 51
           |||||||||||||||||||||
Sbjct: 504 cctcctccccgtcgccacgcc 484
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>gb|AC109585.4| Homo sapiens chromosome 3 clone RP11-802J21, complete sequence
          Length = 213077

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 274   caggattatgtaaatgccaactttt 298
             |||||||||||||||| ||||||||
Sbjct: 43247 caggattatgtaaatgtcaactttt 43271
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>gb|AC121855.3| Mus musculus BAC clone RP24-97C18 from chromosome 6, complete sequence
          Length = 192062

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 468   taaaaattaaactttagtatt 488
             |||||||||||||||||||||
Sbjct: 49689 taaaaattaaactttagtatt 49669
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>gb|AC108486.2| Homo sapiens chromosome 3 clone RP11-114C6, complete sequence
          Length = 157904

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 274    caggattatgtaaatgccaactttt 298
              |||||||||||||||| ||||||||
Sbjct: 116173 caggattatgtaaatgtcaactttt 116197
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>gb|AC154220.1| Mus musculus BAC clone RP24-364C6 from chromosome 13, complete sequence
          Length = 175727

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 249   ctcaggacaacttggggtaca 269
             |||||||||||||||||||||
Sbjct: 19008 ctcaggacaacttggggtaca 18988
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>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0498H04
          Length = 151046

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 31     cctcctccccgtcgccacgcc 51
              |||||||||||||||||||||
Sbjct: 118713 cctcctccccgtcgccacgcc 118693
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>dbj|AK069503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019J18, full
           insert sequence
          Length = 1398

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 31  cctcctccccgtcgccacgcc 51
           |||||||||||||||||||||
Sbjct: 504 cctcctccccgtcgccacgcc 484
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>emb|BX005435.16| Zebrafish DNA sequence from clone CH211-154E15 in linkage group 17,
             complete sequence
          Length = 166247

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 604   cctagattttagatttagctt 624
             |||||||||||||||||||||
Sbjct: 20041 cctagattttagatttagctt 20061
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>tpe|BN000646.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx117 gene
           for class III peroxidase 117 precursor, exon 1
          Length = 948

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 31  cctcctccccgtcgccacgcc 51
           |||||||||||||||||||||
Sbjct: 441 cctcctccccgtcgccacgcc 421
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>gb|AC122860.5| Mus musculus BAC clone RP23-135A22 from 12, complete sequence
          Length = 233864

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 214    ttgggacatcagatgctcttg 234
              |||||||||||||||||||||
Sbjct: 155429 ttgggacatcagatgctcttg 155449
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>emb|CR626962.9| Zebrafish DNA sequence from clone CH211-15D5 in linkage group 17,
            complete sequence
          Length = 117015

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 604  cctagattttagatttagctt 624
            |||||||||||||||||||||
Sbjct: 4229 cctagattttagatttagctt 4209
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>ref|NM_117416.2| Arabidopsis thaliana HAK5; potassium ion transporter AT4G13420 (HAK5)
            mRNA, complete cds
          Length = 2623

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 80   cccgtgaaccgagtgacgtc 99
            ||||||||||||||||||||
Sbjct: 1866 cccgtgaaccgagtgacgtc 1885
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>ref|NM_005599.2| Homo sapiens nescient helix loop helix 2 (NHLH2), mRNA
          Length = 2518

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ccccgcggcgcaccccgccc 139
           ||||||||||||||||||||
Sbjct: 942 ccccgcggcgcaccccgccc 923
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>gb|AC121146.8| Mus musculus chromosome 3, clone RP24-297G3, complete sequence
          Length = 157105

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 636    tagaaaagaagcagtggtgt 655
              ||||||||||||||||||||
Sbjct: 113549 tagaaaagaagcagtggtgt 113568
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>gb|AC135361.3| Mus musculus BAC clone RP23-216A21 from chromosome 14, complete
            sequence
          Length = 203946

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 607  agattttagatttagctttc 626
            ||||||||||||||||||||
Sbjct: 4854 agattttagatttagctttc 4835
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>gb|AC140199.2| Mus musculus BAC clone RP23-480D7 from chromosome 9, complete sequence
          Length = 170896

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 426   tgtcactttgtcagtgcccaaggtctct 453
             |||||||||||||||| |||| ||||||
Sbjct: 71919 tgtcactttgtcagtgtccaatgtctct 71946
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>gb|AC121978.2| Mus musculus BAC clone RP24-289K21 from 14, complete sequence
          Length = 168968

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 607   agattttagatttagctttc 626
             ||||||||||||||||||||
Sbjct: 17448 agattttagatttagctttc 17467
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>gb|BT010589.1| Arabidopsis thaliana At4g13420 gene, complete cds
          Length = 2358

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 80   cccgtgaaccgagtgacgtc 99
            ||||||||||||||||||||
Sbjct: 1789 cccgtgaaccgagtgacgtc 1808
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>gb|U41279.1| Caenorhabditis elegans cosmid C17C3, complete sequence
          Length = 45355

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   aaagagacaaatgaactgtt 370
             ||||||||||||||||||||
Sbjct: 12463 aaagagacaaatgaactgtt 12444
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>emb|AL449264.18| Human DNA sequence from clone RP11-485H8 on chromosome 1 Contains the 5'
              end of the CASQ2 gene for calsequestrin 2 (cardiac muscle),
              the NHLH2 gene for nescient helix loop helix 2, a
              heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
              pseudogene and two CpG islands, complete sequence
          Length = 164655

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    ccccgcggcgcaccccgccc 139
              ||||||||||||||||||||
Sbjct: 104473 ccccgcggcgcaccccgccc 104492
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>emb|AL731825.1|BTPBTOXIS Bacillus thuringiensis subsp. israelensis plasmid pBtoxis
          Length = 127923

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 631  aagtgtagaaaagaagcagt 650
            ||||||||||||||||||||
Sbjct: 1946 aagtgtagaaaagaagcagt 1965
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>emb|AL356173.2|NCB14D6 Neurospora crassa DNA linkage group II BAC contig B14D6
          Length = 199386

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 469    aaaaattaaactttagtatt 488
              ||||||||||||||||||||
Sbjct: 154966 aaaaattaaactttagtatt 154985
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>emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 36
          Length = 199634

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    cccgtgaaccgagtgacgtc 99
             ||||||||||||||||||||
Sbjct: 84348 cccgtgaaccgagtgacgtc 84329
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>emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4, BAC clone T9E8, partial sequence
             (ESSA project)
          Length = 95432

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    cccgtgaaccgagtgacgtc 99
             ||||||||||||||||||||
Sbjct: 68369 cccgtgaaccgagtgacgtc 68350
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>emb|CR450704.7| Zebrafish DNA sequence from clone DKEY-65O14 in linkage group 8, complete
              sequence
          Length = 191439

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    attatgtaaatgccaacttt 297
              ||||||||||||||||||||
Sbjct: 144282 attatgtaaatgccaacttt 144263
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>gb|BC028729.1| Homo sapiens cDNA clone IMAGE:4811590
          Length = 4177

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 ccccgcggcgcaccccgccc 139
           ||||||||||||||||||||
Sbjct: 62  ccccgcggcgcaccccgccc 81
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>gb|BC096361.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone
           MGC:117068 IMAGE:40010652), complete cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ccccgcggcgcaccccgccc 139
           ||||||||||||||||||||
Sbjct: 889 ccccgcggcgcaccccgccc 870
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>gb|BC096359.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone
           MGC:117066 IMAGE:40010648), complete cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ccccgcggcgcaccccgccc 139
           ||||||||||||||||||||
Sbjct: 889 ccccgcggcgcaccccgccc 870
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>gb|BC096362.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone
           MGC:117069 IMAGE:40010653), complete cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ccccgcggcgcaccccgccc 139
           ||||||||||||||||||||
Sbjct: 889 ccccgcggcgcaccccgccc 870
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>gb|BC096360.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone
           MGC:117067 IMAGE:40010649), complete cds
          Length = 1048

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ccccgcggcgcaccccgccc 139
           ||||||||||||||||||||
Sbjct: 889 ccccgcggcgcaccccgccc 870
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>emb|BX544876.8| Zebrafish DNA sequence from clone CH211-167B20 in linkage group 8,
             complete sequence
          Length = 154624

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   attatgtaaatgccaacttt 297
             ||||||||||||||||||||
Sbjct: 13064 attatgtaaatgccaacttt 13045
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>dbj|AK056621.1| Homo sapiens cDNA FLJ32059 fis, clone NTONG2001676, highly similar to
            HELIX-LOOP-HELIX PROTEIN 2
          Length = 2657

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  ccccgcggcgcaccccgccc 139
            ||||||||||||||||||||
Sbjct: 1403 ccccgcggcgcaccccgccc 1384
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>gb|AF345635.1| Mus musculus pirin gene, partial cds; and VEGF-D gene, promoter
            region and 5' UTR, partial sequence
          Length = 3448

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 447  ggtctctgcagttggagaca 466
            ||||||||||||||||||||
Sbjct: 1088 ggtctctgcagttggagaca 1107
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 422      taattgtcactttgtcagtg 441
                ||||||||||||||||||||
Sbjct: 21893291 taattgtcactttgtcagtg 21893272
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>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0006A22
          Length = 190690

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 422    taattgtcactttgtcagtg 441
              ||||||||||||||||||||
Sbjct: 115776 taattgtcactttgtcagtg 115757
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>gb|AC004082.1|AC004082 Homo sapiens PAC clone RP5-897G10 from 7q11.23-q21.1, complete sequence
          Length = 98029

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   acagtttcaggattatgtaa 286
             ||||||||||||||||||||
Sbjct: 58008 acagtttcaggattatgtaa 57989
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>emb|CR376826.12| Zebrafish DNA sequence from clone DKEYP-78F1 in linkage group 20,
             complete sequence
          Length = 153344

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   atggaaaataagttgaatat 197
             ||||||||||||||||||||
Sbjct: 22771 atggaaaataagttgaatat 22790
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>gb|AF129478.1| Arabidopsis thaliana cultivar Columbia K+ transporter HAK5 (HAK5)
            mRNA, complete cds
          Length = 2534

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 80   cccgtgaaccgagtgacgtc 99
            ||||||||||||||||||||
Sbjct: 1798 cccgtgaaccgagtgacgtc 1817
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>gb|M97508.1|HUMHEN2A Homo sapiens helix-loop-helix protein (HEN2) gene, complete cds
          Length = 2156

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ccccgcggcgcaccccgccc 139
           ||||||||||||||||||||
Sbjct: 883 ccccgcggcgcaccccgccc 864
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>emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chromosome X, complete
             sequence
          Length = 165720

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 447   ggtctctgcagttggagaca 466
             ||||||||||||||||||||
Sbjct: 61560 ggtctctgcagttggagaca 61579
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>gb|M96740.1|HUMNSCL2A Human NSCL-2 gene sequence
          Length = 2519

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ccccgcggcgcaccccgccc 139
           ||||||||||||||||||||
Sbjct: 961 ccccgcggcgcaccccgccc 942
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>dbj|AB007959.1| Homo sapiens mRNA, chromosome 1 specific transcript KIAA0490
          Length = 6075

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 ccccgcggcgcaccccgccc 139
           ||||||||||||||||||||
Sbjct: 101 ccccgcggcgcaccccgccc 120


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,737,307
Number of Sequences: 3902068
Number of extensions: 6737307
Number of successful extensions: 136402
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135856
Number of HSP's gapped (non-prelim): 546
length of query: 658
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 635
effective length of database: 17,143,297,704
effective search space: 10885994042040
effective search space used: 10885994042040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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