ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags37c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COLI1_ONCMY (Q04617) Corticotropin-lipotropin A precursor (Pro-o... 30 6.0
2VGLG_VHSV0 (P27662) Spike glycoprotein precursor 30 7.9

>COLI1_ONCMY (Q04617) Corticotropin-lipotropin A precursor (Pro-opiomelanocortin|
           A) (POMC A) [Contains: NPP 1; Corticotropin
           (Adrenocorticotropic hormone) (ACTH); Melanotropin alpha
           1 (Alpha-MSH 1); Corticotropin-like intermediary peptide
           1 (CLIP-1); Lipo
          Length = 253

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 437 ERIPSKILVYQASDDPLYSGYRAAVEASAQEETLLG-FAIWEPPHGPYRTRNYPWKG 604
           E  PS++     +DD +Y    A      + E + G F++ E   G Y+  ++ W G
Sbjct: 136 EAFPSEMRRELGTDDAVYPSLEAGTAEGGEAEGMEGVFSLQEKKDGSYKMNHFRWSG 192



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>VGLG_VHSV0 (P27662) Spike glycoprotein precursor|
          Length = 507

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 19/55 (34%), Positives = 19/55 (34%)
 Frame = -1

Query: 635 NASMLHQLWXNPSKDSSSFCMDHGVVPI*QNLTGFPLVLMPRQLPCTHYIEDHQK 471
           N S  H  W  P     S C D   VPI            P QL C H  ED  K
Sbjct: 30  NISTYHADWDTPLYTHPSNCRDDSFVPI-----------RPAQLRCPHEFEDINK 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,237,469
Number of Sequences: 219361
Number of extensions: 1861349
Number of successful extensions: 3698
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3697
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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