ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags37b24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BCHG_CHLAU (P33326) Bacteriochlorophyll synthase 34 kDa chain 31 2.7
2HAIR_HUMAN (O43593) Protein hairless 30 7.9

>BCHG_CHLAU (P33326) Bacteriochlorophyll synthase 34 kDa chain|
          Length = 310

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 22/82 (26%), Positives = 39/82 (47%)
 Frame = +2

Query: 2   VAFGMDTAKWICVGAIDITQLSVAAYLLSTGKLYYALALVGLTIPQVILQFQYFLKDPVK 181
           V +G   A  + V  + + Q++V   L   G    A  +  L   Q I   + F++DP  
Sbjct: 226 VQYGKVMAARMVVTTMGVAQIAVIGLLFHWGHPVAATVVAILLAAQSIPNAR-FIRDPEN 284

Query: 182 YDVKYQASAQPFFVFGLLVTAL 247
            +V + A+A   +V+G+L  A+
Sbjct: 285 NEVFFNATAIMLYVWGMLAAAI 306



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>HAIR_HUMAN (O43593) Protein hairless|
          Length = 1189

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
 Frame = +1

Query: 52  HHSIICCSLPPEHWQAVLCLGTSWT----DNSPGDLAVSVLPEGPCEVRRQI 195
           HH  +C   P   W+ VL    SW        P D+   V  EGP    R++
Sbjct: 37  HHGPLCLGEPAPFWRGVLSTPDSWLPPGFPQGPKDMLPLVEGEGPQNGERKV 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,003,549
Number of Sequences: 219361
Number of extensions: 1881279
Number of successful extensions: 4586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4580
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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