ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags37b24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ277210.1|ASA277210 Avena sativa mRNA for chlorophyll synth... 396 e-107
2gb|AY108751.1| Zea mays PCO143366 mRNA sequence 234 3e-58
3dbj|AK099004.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
4dbj|AK068855.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
5dbj|AK060912.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
6gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome... 90 1e-14
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
8ref|NM_115041.2| Arabidopsis thaliana prenyltransferase AT3G5182... 70 1e-08
9gb|AY081481.1| Arabidopsis thaliana chlorophyll synthetase (At3g... 70 1e-08
10gb|AY042821.1| Arabidopsis thaliana putative chlorophyll synthet... 70 1e-08
11emb|Z11158.1|ATEM1 A.thaliana Em protein gene (ATEM1) 52 0.002
12gb|AF049236.1|AF049236 Arabidopsis thaliana putative transmembra... 52 0.002
13gb|U19382.1|ATU19382 Arabidopsis thaliana putative chlorophyll s... 52 0.002
14gb|AC144816.3| Mus musculus BAC clone RP24-243E15 from chromosom... 42 2.2
15gb|AC127307.3| Mus musculus BAC clone RP23-291E6 from 6, complet... 42 2.2
16emb|AL451124.13| Human DNA sequence from clone RP11-20P5 on chro... 42 2.2
17gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 42 2.2
18gb|AC008147.31| Homo sapiens 12 BAC RP3-405J10 (Roswell Park Can... 42 2.2
19gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 40 8.7
20gb|AE013059.1| Thermoanaerobacter tengcongensis MB4, section 86 ... 40 8.7
21gb|AC123610.10| Mus musculus chromosome 9, clone RP23-343M15, co... 40 8.7
22gb|AC140331.2| Mus musculus BAC clone RP23-406J20 from chromosom... 40 8.7
23emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in l... 40 8.7
24gb|AC120114.2| Homo sapiens chromosome 16 clone CTD-2574D22, com... 40 8.7
25emb|AL626784.11| Mouse DNA sequence from clone RP23-392J14 on ch... 40 8.7 
>emb|AJ277210.1|ASA277210 Avena sativa mRNA for chlorophyll synthase (chlG gene)
          Length = 1428

 Score =  396 bits (200), Expect = e-107
 Identities = 248/264 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1    tgttgcttttggtatggacactgcaaaatggatatgtgttggagcaatcgacatcactca 60
            |||||||||||||||||| || || ||||||||||||||||||||||| |||||||| ||
Sbjct: 876  tgttgcttttggtatggaaaccgccaaatggatatgtgttggagcaattgacatcaccca 935

                                                                        
Query: 61   attatctgttgcagcctacctcctgagcactggcaagctgtattatgccttggcactagt 120
            ||||||||||||||| |||||| ||||||| |||||||||||||||||| |||||||| |
Sbjct: 936  attatctgttgcagcttacctcttgagcaccggcaagctgtattatgccctggcactact 995

                                                                        
Query: 121  tggactgacaattccccaggtgatcttgcagtttcagtacttcctgaaggaccctgtgaa 180
            |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 996  tggactaacaattccccaggtgatcttgcagttccagtacttcctgaaggaccctgtgaa 1055

                                                                        
Query: 181  gtacgacgtcaaataccaggcgagcgcgcaaccattcttcgtcttcggcctactggttac 240
            |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 1056 gtacgatgtcaaataccaggcgagcgcgcaaccgttcttcgtcttcggcctgctggttac 1115

                                    
Query: 241  tgccctggcgaccagccactgacg 264
             |||||||||||||||||||||||
Sbjct: 1116 cgccctggcgaccagccactgacg 1139
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>gb|AY108751.1| Zea mays PCO143366 mRNA sequence
          Length = 927

 Score =  234 bits (118), Expect = 3e-58
 Identities = 223/258 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgcttttggtatggacactgcaaaatggatatgtgttggagcaatcgacatcactca 60
           |||||||||||| ||||| |||||||||||||| |||||||||||||| || ||||||||
Sbjct: 296 tgttgcttttgggatggaaactgcaaaatggatttgtgttggagcaattgatatcactca 355

                                                                       
Query: 61  attatctgttgcagcctacctcctgagcactggcaagctgtattatgccttggcactagt 120
           ||||||||||||||  |||||  ||||||| || ||||||||||||||| |||   |  |
Sbjct: 356 attatctgttgcaggttacctattgagcaccggtaagctgtattatgccctggtgttgct 415

                                                                       
Query: 121 tggactgacaattccccaggtgatcttgcagtttcagtacttcctgaaggaccctgtgaa 180
           ||| || |||||||| |||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct: 416 tgggctaacaattcctcaggtgttctttcagttccagtacttcctgaaggaccctgtgaa 475

                                                                       
Query: 181 gtacgacgtcaaataccaggcgagcgcgcaaccattcttcgtcttcggcctactggttac 240
           ||| || |||||||| ||||| ||||| ||||||||||||||  | ||||||||||| ||
Sbjct: 476 gtatgatgtcaaatatcaggcaagcgcacaaccattcttcgtactgggcctactggtgac 535

                             
Query: 241 tgccctggcgaccagcca 258
            || ||||| ||||||||
Sbjct: 536 agcactggcaaccagcca 553
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>dbj|AK099004.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108A17, full
            insert sequence
          Length = 1599

 Score =  232 bits (117), Expect = 1e-57
 Identities = 225/261 (86%)
 Strand = Plus / Plus

                                                                        
Query: 2    gttgcttttggtatggacactgcaaaatggatatgtgttggagcaatcgacatcactcaa 61
            ||||||||||||||||| |||||||| ||||||||||| ||||| || ||||| ||||||
Sbjct: 902  gttgcttttggtatggaaactgcaaagtggatatgtgtaggagcgattgacataactcaa 961

                                                                        
Query: 62   ttatctgttgcagcctacctcctgagcactggcaagctgtattatgccttggcactagtt 121
            ||||| ||||||| ||||||  | ||  | |||||||  ||||||||| |||||||  | 
Sbjct: 962  ttatccgttgcaggctaccttttcagttcaggcaagccttattatgccctggcactgcta 1021

                                                                        
Query: 122  ggactgacaattccccaggtgatcttgcagtttcagtacttcctgaaggaccctgtgaag 181
            ||||| |||||||| |||||| |||| ||||| || |||||||| |||||||||||||||
Sbjct: 1022 ggactcacaattcctcaggtggtctttcagttccaatacttcctcaaggaccctgtgaag 1081

                                                                        
Query: 182  tacgacgtcaaataccaggcgagcgcgcaaccattcttcgtcttcggcctactggttact 241
            || ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| || 
Sbjct: 1082 tatgacgtcaaataccaggcaagcgcgcaaccgttcttcgtcttgggccttctggtgacc 1141

                                 
Query: 242  gccctggcgaccagccactga 262
            ||||| || ||||||||||||
Sbjct: 1142 gcccttgcaaccagccactga 1162
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>dbj|AK068855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169I11, full
            insert sequence
          Length = 1672

 Score =  232 bits (117), Expect = 1e-57
 Identities = 225/261 (86%)
 Strand = Plus / Plus

                                                                        
Query: 2    gttgcttttggtatggacactgcaaaatggatatgtgttggagcaatcgacatcactcaa 61
            ||||||||||||||||| |||||||| ||||||||||| ||||| || ||||| ||||||
Sbjct: 950  gttgcttttggtatggaaactgcaaagtggatatgtgtaggagcgattgacataactcaa 1009

                                                                        
Query: 62   ttatctgttgcagcctacctcctgagcactggcaagctgtattatgccttggcactagtt 121
            ||||| ||||||| ||||||  | ||  | |||||||  ||||||||| |||||||  | 
Sbjct: 1010 ttatccgttgcaggctaccttttcagttccggcaagccttattatgccctggcactgcta 1069

                                                                        
Query: 122  ggactgacaattccccaggtgatcttgcagtttcagtacttcctgaaggaccctgtgaag 181
            ||||| |||||||| |||||| |||| ||||| || |||||||| |||||||||||||||
Sbjct: 1070 ggactcacaattcctcaggtggtctttcagttccaatacttcctcaaggaccctgtgaag 1129

                                                                        
Query: 182  tacgacgtcaaataccaggcgagcgcgcaaccattcttcgtcttcggcctactggttact 241
            || ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| || 
Sbjct: 1130 tatgacgtcaaataccaggcaagcgcgcaaccgttcttcgtcttgggccttctggtgacc 1189

                                 
Query: 242  gccctggcgaccagccactga 262
            ||||| || ||||||||||||
Sbjct: 1190 gcccttgcaaccagccactga 1210
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>dbj|AK060912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F12, full
           insert sequence
          Length = 1073

 Score =  232 bits (117), Expect = 1e-57
 Identities = 225/261 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   gttgcttttggtatggacactgcaaaatggatatgtgttggagcaatcgacatcactcaa 61
           ||||||||||||||||| |||||||| ||||||||||| ||||| || ||||| ||||||
Sbjct: 279 gttgcttttggtatggaaactgcaaagtggatatgtgtaggagcgattgacataactcaa 338

                                                                       
Query: 62  ttatctgttgcagcctacctcctgagcactggcaagctgtattatgccttggcactagtt 121
           ||||| ||||||| ||||||  | ||  | |||||||  ||||||||| |||||||  | 
Sbjct: 339 ttatccgttgcaggctaccttttcagttccggcaagccttattatgccctggcactgcta 398

                                                                       
Query: 122 ggactgacaattccccaggtgatcttgcagtttcagtacttcctgaaggaccctgtgaag 181
           ||||| |||||||| |||||| |||| ||||| || |||||||| |||||||||||||||
Sbjct: 399 ggactcacaattcctcaggtggtctttcagttccaatacttcctcaaggaccctgtgaag 458

                                                                       
Query: 182 tacgacgtcaaataccaggcgagcgcgcaaccattcttcgtcttcggcctactggttact 241
           || ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| || 
Sbjct: 459 tatgacgtcaaataccaggcaagcgcgcaaccgttcttcgtcttgggccttctggtgacc 518

                                
Query: 242 gccctggcgaccagccactga 262
           ||||| || ||||||||||||
Sbjct: 519 gcccttgcaaccagccactga 539
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>gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0077J17, complete sequence
          Length = 141598

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                         
Query: 2     gttgcttttggtatggacactgcaaaatggatatgtgttggagcaatcgacatcactcaa 61
             ||||||||||||||||| |||||||| ||||||||||| ||||| || ||||| ||||||
Sbjct: 20506 gttgcttttggtatggaaactgcaaagtggatatgtgtaggagcgattgacataactcaa 20565

                          
Query: 62    ttatctgttgcag 74
             ||||| |||||||
Sbjct: 20566 ttatccgttgcag 20578



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                  
Query: 148   gcagtttcagtacttcctgaaggaccctgtgaagtacgacgtcaaataccagg 200
             |||||| || |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 21935 gcagttccaatacttcctcaaggaccctgtgaagtatgacgtcaaataccagg 21987



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                         
Query: 197   caggcgagcgcgcaaccattcttcgtcttcggcctactggttactgccctggcgaccagc 256
             ||||| ||||||||||| ||||||||||| ||||| ||||| || ||||| || ||||||
Sbjct: 22115 caggcaagcgcgcaaccgttcttcgtcttgggccttctggtgaccgcccttgcaaccagc 22174

                   
Query: 257   cactga 262
             ||||||
Sbjct: 22175 cactga 22180
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                            
Query: 2        gttgcttttggtatggacactgcaaaatggatatgtgttggagcaatcgacatcactcaa 61
                ||||||||||||||||| |||||||| ||||||||||| ||||| || ||||| ||||||
Sbjct: 16380069 gttgcttttggtatggaaactgcaaagtggatatgtgtaggagcgattgacataactcaa 16380128

                             
Query: 62       ttatctgttgcag 74
                ||||| |||||||
Sbjct: 16380129 ttatccgttgcag 16380141



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                     
Query: 148      gcagtttcagtacttcctgaaggaccctgtgaagtacgacgtcaaataccagg 200
                |||||| || |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 16381498 gcagttccaatacttcctcaaggaccctgtgaagtatgacgtcaaataccagg 16381550



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                            
Query: 197      caggcgagcgcgcaaccattcttcgtcttcggcctactggttactgccctggcgaccagc 256
                ||||| ||||||||||| ||||||||||| ||||| ||||| || ||||| || ||||||
Sbjct: 16381678 caggcaagcgcgcaaccgttcttcgtcttgggccttctggtgaccgcccttgcaaccagc 16381737

                      
Query: 257      cactga 262
                ||||||
Sbjct: 16381738 cactga 16381743
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>ref|NM_115041.2| Arabidopsis thaliana prenyltransferase AT3G51820 mRNA, complete cds
          Length = 1578

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                        
Query: 149  cagtttcagtacttcctgaaggaccctgtgaagtacgacgtcaaataccaggcgagcgcg 208
            |||||| | ||||| || ||||||||||| || ||||||||||| |||||||| ||||||
Sbjct: 1167 cagtttaaatactttctcaaggaccctgtcaaatacgacgtcaagtaccaggcaagcgcg 1226

                       
Query: 209  caaccattctt 219
            || ||||||||
Sbjct: 1227 cagccattctt 1237



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 20   actgcaaaatggatatgtgttggagcaatcgacatcactca 60
            ||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 1038 actgcaaaatggatatgcgttggtgctatagacattactca 1078
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>gb|AY081481.1| Arabidopsis thaliana chlorophyll synthetase (At3g51820) mRNA,
            complete cds
          Length = 1203

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                        
Query: 149  cagtttcagtacttcctgaaggaccctgtgaagtacgacgtcaaataccaggcgagcgcg 208
            |||||| | ||||| || ||||||||||| || ||||||||||| |||||||| ||||||
Sbjct: 1051 cagtttaaatactttctcaaggaccctgtcaaatacgacgtcaagtaccaggcaagcgcg 1110

                       
Query: 209  caaccattctt 219
            || ||||||||
Sbjct: 1111 cagccattctt 1121



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 20  actgcaaaatggatatgtgttggagcaatcgacatcactca 60
           ||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 922 actgcaaaatggatatgcgttggtgctatagacattactca 962
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>gb|AY042821.1| Arabidopsis thaliana putative chlorophyll synthetase (At3g51820)
            mRNA, complete cds
          Length = 1458

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                        
Query: 149  cagtttcagtacttcctgaaggaccctgtgaagtacgacgtcaaataccaggcgagcgcg 208
            |||||| | ||||| || ||||||||||| || ||||||||||| |||||||| ||||||
Sbjct: 1167 cagtttaaatactttctcaaggaccctgtcaaatacgacgtcaagtaccaggcaagcgcg 1226

                       
Query: 209  caaccattctt 219
            || ||||||||
Sbjct: 1227 cagccattctt 1237



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 20   actgcaaaatggatatgtgttggagcaatcgacatcactca 60
            ||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 1038 actgcaaaatggatatgcgttggtgctatagacattactca 1078
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>emb|Z11158.1|ATEM1 A.thaliana Em protein gene (ATEM1)
          Length = 3541

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 147  tgcagtttcagtacttcctgaaggaccctgtgaagtacgacgtcaaataccagg 200
            |||||||| | ||||| || ||||||||||| || ||||||||||| |||||||
Sbjct: 3351 tgcagtttaaatactttctcaaggaccctgtcaaatacgacgtcaagtaccagg 3298
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>gb|AF049236.1|AF049236 Arabidopsis thaliana putative transmembrane protein G1p (AtG1),
             putative nuclear DNA-binding protein G2p (AtG2), Em1
             protein (ATEM1), putative chlorophyll synthetase (AtG4),
             putative transmembrane protein G5p (AtG5), putative
             acyl-coA dehydrogenase (AtG6), and calcium dependent
             protein kinase genes, complete cds; and unknown genes
          Length = 60000

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 147   tgcagtttcagtacttcctgaaggaccctgtgaagtacgacgtcaaataccagg 200
             |||||||| | ||||| || ||||||||||| || ||||||||||| |||||||
Sbjct: 18890 tgcagtttaaatactttctcaaggaccctgtcaaatacgacgtcaagtaccagg 18837



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 20    actgcaaaatggatatgtgttggagcaatcgacatcactca 60
             ||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 19464 actgcaaaatggatatgcgttggtgctatagacattactca 19424
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>gb|U19382.1|ATU19382 Arabidopsis thaliana putative chlorophyll synthetase (G4) gene,
            complete cds
          Length = 3660

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                  
Query: 147  tgcagtttcagtacttcctgaaggaccctgtgaagtacgacgtcaaataccagg 200
            |||||||| | ||||| || ||||||||||| || ||||||||||| |||||||
Sbjct: 2836 tgcagtttaaatactttctcaaggaccctgtcaaatacgacgtcaagtaccagg 2889



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 20   actgcaaaatggatatgtgttggagcaatcgacatcactca 60
            ||||||||||||||||| ||||| || || ||||| |||||
Sbjct: 2262 actgcaaaatggatatgcgttggtgctatagacattactca 2302
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>gb|AC144816.3| Mus musculus BAC clone RP24-243E15 from chromosome 6, complete sequence
          Length = 167096

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 76     ctacctcctgagcactggcaa 96
              |||||||||||||||||||||
Sbjct: 105722 ctacctcctgagcactggcaa 105742
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>gb|AC127307.3| Mus musculus BAC clone RP23-291E6 from 6, complete sequence
          Length = 211245

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 76     ctacctcctgagcactggcaa 96
              |||||||||||||||||||||
Sbjct: 189919 ctacctcctgagcactggcaa 189899
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>emb|AL451124.13| Human DNA sequence from clone RP11-20P5 on chromosome 9 Contains the
            3' end of a variant of a novel gene (FLJ31810) and a
            novel pseudogene (FLJ37424), complete sequence
          Length = 164291

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 128  acaattccccaggtgatcttg 148
            |||||||||||||||||||||
Sbjct: 3499 acaattccccaggtgatcttg 3479
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 183     acgacgtcaaataccaggcgagcgc 207
               ||||||||||||||||||| |||||
Sbjct: 2152772 acgacgtcaaataccaggccagcgc 2152796
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>gb|AC008147.31| Homo sapiens 12 BAC RP3-405J10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 115345

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 70    tgcagcctacctcctgagcac 90
             |||||||||||||||||||||
Sbjct: 83475 tgcagcctacctcctgagcac 83495
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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    aatggatatgtgttggagca 46
             ||||||||||||||||||||
Sbjct: 56962 aatggatatgtgttggagca 56981
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>gb|AE013059.1| Thermoanaerobacter tengcongensis MB4, section 86 of 244 of the
            complete genome
          Length = 9205

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 413  cttctgctgctgtacctgta 432
            ||||||||||||||||||||
Sbjct: 1399 cttctgctgctgtacctgta 1380
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>gb|AC123610.10| Mus musculus chromosome 9, clone RP23-343M15, complete sequence
          Length = 206563

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     ctacctcctgagcactggca 95
              ||||||||||||||||||||
Sbjct: 153185 ctacctcctgagcactggca 153204
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>gb|AC140331.2| Mus musculus BAC clone RP23-406J20 from chromosome 13, complete
             sequence
          Length = 192473

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   aacacagttagtggaataag 346
             ||||||||||||||||||||
Sbjct: 84542 aacacagttagtggaataag 84523
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>emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in linkage group 5,
             complete sequence
          Length = 226730

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 2     gttgcttttggtatggacactgcaaaatggat 33
             |||||||||| |||| ||||||||||||||||
Sbjct: 29368 gttgcttttg-tatgcacactgcaaaatggat 29338
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>gb|AC120114.2| Homo sapiens chromosome 16 clone CTD-2574D22, complete sequence
          Length = 140666

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 65    tctgttgcagcctacctcctgagc 88
             |||| |||||||||||||||||||
Sbjct: 66806 tctggtgcagcctacctcctgagc 66783
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>emb|AL626784.11| Mouse DNA sequence from clone RP23-392J14 on chromosome 4, complete
             sequence
          Length = 211585

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    ctacctcctgagcactggca 95
             ||||||||||||||||||||
Sbjct: 88064 ctacctcctgagcactggca 88045


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,092,061
Number of Sequences: 3902068
Number of extensions: 4092061
Number of successful extensions: 75517
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 75438
Number of HSP's gapped (non-prelim): 76
length of query: 641
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 618
effective length of database: 17,143,297,704
effective search space: 10594557981072
effective search space used: 10594557981072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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