ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags36m16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC102841.7| Mus musculus chromosome 7, clone RP24-371C6, comp... 44 0.54
2gb|AC156987.7| Mus musculus chromosome 7, clone RP23-78K13, comp... 44 0.54
3gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 44 0.54
4dbj|AB073400.1| Brassica napus mitochondrial linear plasmid DNA,... 44 0.54
5gb|AC127282.3| Mus musculus BAC clone RP23-318O24 from chromosom... 42 2.2
6gb|AC098884.3| Mus musculus BAC clone RP23-122I23 from 3, comple... 42 2.2
7ref|XM_664468.1| Plasmodium berghei strain ANKA hypothetical pro... 42 2.2
8emb|BX548058.9| Zebrafish DNA sequence from clone CH211-181H11 i... 42 2.2
9gb|AC079768.8| Homo sapiens BAC clone RP11-205M3 from 4, complet... 42 2.2
10gb|AC084541.1|CBRG27D19 Caenorhabditis briggsae cosmid G27D19, c... 42 2.2
11gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 2.2
12dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 2.2
13emb|BX548060.7| Zebrafish DNA sequence from clone CH211-117I10 i... 42 2.2
14emb|CR774199.4| Zebrafish DNA sequence from clone CH211-42H24 in... 42 2.2
15gb|AC144779.3| Mus musculus BAC clone RP23-331N18 from 5, comple... 42 2.2
16gb|AC164549.4| Mus musculus BAC clone RP24-273K1 from chromosome... 40 8.5
17gb|AY850394.1| Lycopersicon esculentum cultivar Heinz1706 chromo... 40 8.5
18gb|AC150548.2| Bos taurus BAC CH240-72J19 (Children's Hospital ... 40 8.5
19ref|XM_705503.1| Candida albicans SC5314 putative spliceosomal t... 40 8.5
20ref|XM_705490.1| Candida albicans SC5314 putative spliceosomal t... 40 8.5
21emb|CT010435.4| Mouse DNA sequence from clone RP23-445H9 on chro... 40 8.5
22ref|XM_823013.1| Trypanosoma brucei TREU927 variant surface glyc... 40 8.5
23emb|CR380838.2| Pan troglodytes chromosome X BAC RP43-021E02, co... 40 8.5
24gb|AC084438.5| Homo sapiens BAC clone RP11-89D15 from 7, complet... 40 8.5
25emb|CR956417.1| Pig DNA sequence from clone CH242-300K12 on chro... 40 8.5
26emb|Z99569.1|HS106H14 Human DNA sequence from clone RP1-106H14 o... 40 8.5
27emb|AL590422.15| Human DNA sequence from clone RP11-444D13 on ch... 40 8.5
28gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 8.5
29gb|AE014838.1| Plasmodium falciparum 3D7 chromosome 11 section 3... 40 8.5
30emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 40 8.5
31emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 40 8.5
32emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete ... 40 8.5
33emb|AL669833.7| Mouse DNA sequence from clone RP23-51C16 on chro... 40 8.5
34gb|AC155291.3| Mus musculus BAC clone RP24-439M20 from chromosom... 40 8.5
35gb|AC116315.2| Homo sapiens chromosome 1 clone RP11-211J9, compl... 40 8.5
36emb|BX248392.16| Zebrafish DNA sequence from clone CH211-220F12 ... 40 8.5
37gb|AE012056.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 8.5
38gb|AC104458.2| Homo sapiens chromosome 1 clone RP5-1102E8, compl... 40 8.5
39gb|U15186.1|MLU15186 Mycobacterium leprae cosmid L471 40 8.5
40gb|AC008900.5| Homo sapiens chromosome 5 clone CTD-2242C17, comp... 40 8.5
41gb|AC133597.5| Mus musculus BAC clone RP24-313B5 from chromosome... 40 8.5
42gb|AC026230.5|AC026230 Homo sapiens chromosome 5 clone CTD-2288O... 40 8.5
43gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 8.5
44gb|AC095041.3| Homo sapiens BAC clone RP11-84H6 from 4, complete... 40 8.5
45gb|AC108205.5| Homo sapiens BAC clone RP11-140N6 from 4, complet... 40 8.5
46gb|AC155723.6| Mus musculus 6 BAC RP24-131B7 (Roswell Park Cance... 40 8.5
47dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.5
48gb|AC068274.5| Homo sapiens BAC clone RP11-119B15 from 2, comple... 40 8.5
49emb|BX255952.9| Zebrafish DNA sequence from clone CH211-267P8 in... 40 8.5
50emb|BX470142.4| Zebrafish DNA sequence from clone CH211-59C17 in... 40 8.5
51emb|AL954182.18| Zebrafish DNA sequence from clone CH211-205N18 ... 40 8.5
52emb|BX276107.12| Zebrafish DNA sequence from clone CH211-218C17 ... 40 8.5
53gb|AC018450.26| Homo sapiens 3 BAC RP11-80H8 (Roswell Park Cance... 40 8.5 
>gb|AC102841.7| Mus musculus chromosome 7, clone RP24-371C6, complete sequence
          Length = 162151

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 587   attttttgtttcatcatattttgttt 612
             ||||||||||||||| ||||||||||
Sbjct: 59405 attttttgtttcatcttattttgttt 59430
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>gb|AC156987.7| Mus musculus chromosome 7, clone RP23-78K13, complete sequence
          Length = 231140

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 587   attttttgtttcatcatattttgttt 612
             ||||||||||||||| ||||||||||
Sbjct: 27438 attttttgtttcatcttattttgttt 27413
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 82      gtggcggcgctggtcgcgctgatgtg 107
               |||| |||||||||||||||||||||
Sbjct: 1975235 gtggtggcgctggtcgcgctgatgtg 1975210
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>dbj|AB073400.1| Brassica napus mitochondrial linear plasmid DNA, complete sequence
          Length = 11640

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 587   attttttgtttcatcatatttt 608
             ||||||||||||||||||||||
Sbjct: 11235 attttttgtttcatcatatttt 11256
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>gb|AC127282.3| Mus musculus BAC clone RP23-318O24 from chromosome 5, complete sequence
          Length = 222651

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 587   attttttgtttcatcatattttgtt 611
             ||||||||||| |||||||||||||
Sbjct: 22314 attttttgtttaatcatattttgtt 22338
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>gb|AC098884.3| Mus musculus BAC clone RP23-122I23 from 3, complete sequence
          Length = 195428

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 414   tccaagacctctagttctttg 434
             |||||||||||||||||||||
Sbjct: 71398 tccaagacctctagttctttg 71378
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>ref|XM_664468.1| Plasmodium berghei strain ANKA hypothetical protein (PB100014.00.0)
           partial mRNA
          Length = 145

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 588 ttttttgtttcatcatatttt 608
           |||||||||||||||||||||
Sbjct: 65  ttttttgtttcatcatatttt 85
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>emb|BX548058.9| Zebrafish DNA sequence from clone CH211-181H11 in linkage group 18,
             complete sequence
          Length = 95339

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 266   ttgactgttgtgttgtctttg 286
             |||||||||||||||||||||
Sbjct: 54444 ttgactgttgtgttgtctttg 54424
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>gb|AC079768.8| Homo sapiens BAC clone RP11-205M3 from 4, complete sequence
          Length = 134004

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 583    tggaattttttgtttcatcat 603
              |||||||||||||||||||||
Sbjct: 110110 tggaattttttgtttcatcat 110090
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>gb|AC084541.1|CBRG27D19 Caenorhabditis briggsae cosmid G27D19, complete sequence
          Length = 40961

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 45    ggtcatggcagcagcaatgct 65
             |||||||||||||||||||||
Sbjct: 16414 ggtcatggcagcagcaatgct 16394
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 82      gtggcggcgctggtcgcgctg 102
               |||||||||||||||||||||
Sbjct: 4528294 gtggcggcgctggtcgcgctg 4528314
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 86      cggcgctggtcgcgctgatgt 106
               |||||||||||||||||||||
Sbjct: 2784343 cggcgctggtcgcgctgatgt 2784363



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 83      tggcggcgctggtcgcgctg 102
               ||||||||||||||||||||
Sbjct: 7131628 tggcggcgctggtcgcgctg 7131609
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>emb|BX548060.7| Zebrafish DNA sequence from clone CH211-117I10 in linkage group 18,
            complete sequence
          Length = 120346

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 266  ttgactgttgtgttgtctttg 286
            |||||||||||||||||||||
Sbjct: 8317 ttgactgttgtgttgtctttg 8337
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>emb|CR774199.4| Zebrafish DNA sequence from clone CH211-42H24 in linkage group 14,
              complete sequence
          Length = 162722

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 589    tttttgtttcatcatattttg 609
              |||||||||||||||||||||
Sbjct: 129971 tttttgtttcatcatattttg 129991
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>gb|AC144779.3| Mus musculus BAC clone RP23-331N18 from 5, complete sequence
          Length = 168358

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 587   attttttgtttcatcatattttgtt 611
             ||||||||||| |||||||||||||
Sbjct: 19680 attttttgtttaatcatattttgtt 19656
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>gb|AC164549.4| Mus musculus BAC clone RP24-273K1 from chromosome 16, complete sequence
          Length = 182658

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 497   tgtgtgtcatctgagtctgt 516
             ||||||||||||||||||||
Sbjct: 96748 tgtgtgtcatctgagtctgt 96729
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>gb|AY850394.1| Lycopersicon esculentum cultivar Heinz1706 chromosome 12 centromeric
              region
          Length = 326112

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 484    ttttatttgcttatgtgtgt 503
              ||||||||||||||||||||
Sbjct: 208641 ttttatttgcttatgtgtgt 208660
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>gb|AC150548.2| Bos taurus  BAC CH240-72J19 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 176133

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 589   tttttgtttcatcatatttt 608
             ||||||||||||||||||||
Sbjct: 27162 tttttgtttcatcatatttt 27181
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>ref|XM_705503.1| Candida albicans SC5314 putative spliceosomal translocase-like
           protein Snu114p (CaO19.144), mRNA
          Length = 3069

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 tctgcaagatgaagaagaag 321
           ||||||||||||||||||||
Sbjct: 141 tctgcaagatgaagaagaag 160
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>ref|XM_705490.1| Candida albicans SC5314 putative spliceosomal translocase-like
           protein Snu114p (CaO19.7784), mRNA
          Length = 3069

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 tctgcaagatgaagaagaag 321
           ||||||||||||||||||||
Sbjct: 141 tctgcaagatgaagaagaag 160
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>emb|CT010435.4| Mouse DNA sequence from clone RP23-445H9 on chromosome 12, complete
              sequence
          Length = 183240

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 595    tttcatcatattttgtttgt 614
              ||||||||||||||||||||
Sbjct: 172544 tttcatcatattttgtttgt 172563
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>ref|XM_823013.1| Trypanosoma brucei TREU927 variant surface glycoprotein
            (Tb11.51.0005) partial mRNA
          Length = 1437

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 588  ttttttgtttcatcatattt 607
            ||||||||||||||||||||
Sbjct: 1268 ttttttgtttcatcatattt 1249
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>emb|CR380838.2| Pan troglodytes chromosome X BAC RP43-021E02, complete sequence
          Length = 205764

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 512    tctgttctatttttctatgt 531
              ||||||||||||||||||||
Sbjct: 135110 tctgttctatttttctatgt 135129
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>gb|AC084438.5| Homo sapiens BAC clone RP11-89D15 from 7, complete sequence
          Length = 133439

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 477   tgtttgcttttatttgcttatgtg 500
             ||||| ||||||||||||||||||
Sbjct: 35953 tgtttacttttatttgcttatgtg 35930
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>emb|CR956417.1| Pig DNA sequence from clone CH242-300K12 on chromosome 17, complete
             sequence
          Length = 176004

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 478   gtttgcttttatttgcttat 497
             ||||||||||||||||||||
Sbjct: 34149 gtttgcttttatttgcttat 34130
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>emb|Z99569.1|HS106H14 Human DNA sequence from clone RP1-106H14 on chromosome Xq21.1-21.33
             Contains a CpG island, complete sequence
          Length = 80730

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 512   tctgttctatttttctatgt 531
             ||||||||||||||||||||
Sbjct: 55758 tctgttctatttttctatgt 55777
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>emb|AL590422.15| Human DNA sequence from clone RP11-444D13 on chromosome 1 Contains part
             of the RGL1 gene for ral guanine nucleotide dissociation
             stimulator-like 1 and a novel gene, complete sequence
          Length = 198312

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   tgtttgcttttatttgctta 496
             ||||||||||||||||||||
Sbjct: 33834 tgtttgcttttatttgctta 33853
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      gcggcgctggtcgcgctgat 104
               ||||||||||||||||||||
Sbjct: 1205292 gcggcgctggtcgcgctgat 1205273
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>gb|AE014838.1| Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete
              sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 588    ttttttgtttcatcatattt 607
              ||||||||||||||||||||
Sbjct: 182351 ttttttgtttcatcatattt 182370
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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 558     ttgtaccaatcagaataaat 577
               ||||||||||||||||||||
Sbjct: 1623959 ttgtaccaatcagaataaat 1623940
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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 82      gtggcggcgctggtcgcgctgatg 105
               |||||||||||||||| |||||||
Sbjct: 2897605 gtggcggcgctggtcgggctgatg 2897582
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>emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete genome; segment 4/10
          Length = 348450

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     ggtcatggcagcagcaatgc 64
              ||||||||||||||||||||
Sbjct: 340317 ggtcatggcagcagcaatgc 340298
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>emb|AL669833.7| Mouse DNA sequence from clone RP23-51C16 on chromosome 11, complete
             sequence
          Length = 48352

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   tctgttctatttttctatgt 531
             ||||||||||||||||||||
Sbjct: 20085 tctgttctatttttctatgt 20066
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>gb|AC155291.3| Mus musculus BAC clone RP24-439M20 from chromosome 12, complete
             sequence
          Length = 185156

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 595   tttcatcatattttgtttgt 614
             ||||||||||||||||||||
Sbjct: 21649 tttcatcatattttgtttgt 21668
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>gb|AC116315.2| Homo sapiens chromosome 1 clone RP11-211J9, complete sequence
          Length = 154057

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 481  tgcttttatttgcttatgtg 500
            ||||||||||||||||||||
Sbjct: 6757 tgcttttatttgcttatgtg 6776
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>emb|BX248392.16| Zebrafish DNA sequence from clone CH211-220F12 in linkage group 18,
              complete sequence
          Length = 183594

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 513    ctgttctatttttctatgtt 532
              ||||||||||||||||||||
Sbjct: 182354 ctgttctatttttctatgtt 182373
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>gb|AE012056.1| Xanthomonas axonopodis pv. citri str. 306,  section 434 of 469 of the
            complete genome
          Length = 9445

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   cgttgccgtggcggcgctgg 94
            ||||||||||||||||||||
Sbjct: 6329 cgttgccgtggcggcgctgg 6348
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>gb|AC104458.2| Homo sapiens chromosome 1 clone RP5-1102E8, complete sequence
          Length = 135063

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   tgcttttatttgcttatgtg 500
             ||||||||||||||||||||
Sbjct: 81560 tgcttttatttgcttatgtg 81579
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>gb|U15186.1|MLU15186 Mycobacterium leprae cosmid L471
          Length = 36241

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   ggtcatggcagcagcaatgc 64
            ||||||||||||||||||||
Sbjct: 4826 ggtcatggcagcagcaatgc 4845
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>gb|AC008900.5| Homo sapiens chromosome 5 clone CTD-2242C17, complete sequence
          Length = 166253

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   cagggagaaggcctgctagt 385
             ||||||||||||||||||||
Sbjct: 45361 cagggagaaggcctgctagt 45380
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>gb|AC133597.5| Mus musculus BAC clone RP24-313B5 from chromosome 16, complete sequence
          Length = 192699

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 497    tgtgtgtcatctgagtctgt 516
              ||||||||||||||||||||
Sbjct: 192518 tgtgtgtcatctgagtctgt 192537
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>gb|AC026230.5|AC026230 Homo sapiens chromosome 5 clone CTD-2288O8, complete sequence
          Length = 114802

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 366  cagggagaaggcctgctagt 385
            ||||||||||||||||||||
Sbjct: 7064 cagggagaaggcctgctagt 7045
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      gcggcgctggtcgcgctgat 104
               ||||||||||||||||||||
Sbjct: 2340324 gcggcgctggtcgcgctgat 2340305
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>gb|AC095041.3| Homo sapiens BAC clone RP11-84H6 from 4, complete sequence
          Length = 176008

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   tctgttctatttttctatgt 531
             ||||||||||||||||||||
Sbjct: 82792 tctgttctatttttctatgt 82773
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>gb|AC108205.5| Homo sapiens BAC clone RP11-140N6 from 4, complete sequence
          Length = 132623

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   tctgttctatttttctatgt 531
             ||||||||||||||||||||
Sbjct: 33016 tctgttctatttttctatgt 32997
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>gb|AC155723.6| Mus musculus 6 BAC RP24-131B7 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 183349

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 568    cagaataaatttgggtggaattttttgt 595
              |||||||| |||||||||||| ||||||
Sbjct: 99990  cagaataagtttgggtggaatgttttgt 100017
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 86      cggcgctggtcgcgctgatg 105
               ||||||||||||||||||||
Sbjct: 1722427 cggcgctggtcgcgctgatg 1722446
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>gb|AC068274.5| Homo sapiens BAC clone RP11-119B15 from 2, complete sequence
          Length = 118955

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 512  tctgttctatttttctatgt 531
            ||||||||||||||||||||
Sbjct: 5880 tctgttctatttttctatgt 5899
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>emb|BX255952.9| Zebrafish DNA sequence from clone CH211-267P8 in linkage group 24,
             complete sequence
          Length = 121889

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 592   ttgtttcatcatattttgtt 611
             ||||||||||||||||||||
Sbjct: 19641 ttgtttcatcatattttgtt 19660
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>emb|BX470142.4| Zebrafish DNA sequence from clone CH211-59C17 in linkage group 18,
             complete sequence
          Length = 58289

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 513   ctgttctatttttctatgtt 532
             ||||||||||||||||||||
Sbjct: 40832 ctgttctatttttctatgtt 40813
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>emb|AL954182.18| Zebrafish DNA sequence from clone CH211-205N18 in linkage group 20,
              complete sequence
          Length = 151552

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 476    ttgtttgcttttatttgctt 495
              ||||||||||||||||||||
Sbjct: 126322 ttgtttgcttttatttgctt 126303
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>emb|BX276107.12| Zebrafish DNA sequence from clone CH211-218C17 in linkage group 18,
           complete sequence
          Length = 46296

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 513 ctgttctatttttctatgtt 532
           ||||||||||||||||||||
Sbjct: 760 ctgttctatttttctatgtt 779
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>gb|AC018450.26| Homo sapiens 3 BAC RP11-80H8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 191474

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 589    tttttgtttcatcatattttgttt 612
              ||||||||||| ||||||||||||
Sbjct: 129549 tttttgtttcagcatattttgttt 129526


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,039,509
Number of Sequences: 3902068
Number of extensions: 6039509
Number of successful extensions: 135962
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135418
Number of HSP's gapped (non-prelim): 544
length of query: 624
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 601
effective length of database: 17,143,297,704
effective search space: 10303121920104
effective search space used: 10303121920104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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