ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags36m11 |
|---|---|
| Clone Library Name | barley_pub |
>MMS2_SCHPO (O74983) Ubiquitin-conjugating enzyme spm2 (Ubiquitin-conjugating| enzyme variant MMS2 homolog) (UEV MMS2) Length = 139 Score = 69.3 bits (168), Expect = 3e-12 Identities = 28/52 (53%), Positives = 39/52 (75%) Frame = +3 Query: 3 LERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLXLFCD 158 LE+GEKG+G+ + SYG+ +ADDI + W TI+GP ++VHE RIY L + CD Sbjct: 14 LEKGEKGLGESSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHCD 65
>UB2V1_MOUSE (Q9CZY3) Ubiquitin-conjugating enzyme E2 variant 1 (UEV-1) (CROC-1)| Length = 147 Score = 68.9 bits (167), Expect = 4e-12 Identities = 28/51 (54%), Positives = 39/51 (76%) Frame = +3 Query: 3 LERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLXLFC 155 LE G+KG+GDGTVS+G++D +D+ + WTG IIGP T++E RIY L + C Sbjct: 21 LEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIEC 71
>UB2V1_HUMAN (Q13404) Ubiquitin-conjugating enzyme E2 variant 1 (UEV-1) (CROC-1)| (Ubiquitin-conjugating enzyme variant Kua) (TRAF6-regulated IKK activator 1 beta Uev1A) Length = 221 Score = 68.9 bits (167), Expect = 4e-12 Identities = 28/51 (54%), Positives = 39/51 (76%) Frame = +3 Query: 3 LERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLXLFC 155 LE G+KG+GDGTVS+G++D +D+ + WTG IIGP T++E RIY L + C Sbjct: 95 LEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIEC 145
>UB2V2_RAT (Q7M767) Ubiquitin-conjugating enzyme E2 variant 2| (Ubiquitin-conjugating enzyme variant MMS2) Length = 144 Score = 66.2 bits (160), Expect = 2e-11 Identities = 28/51 (54%), Positives = 38/51 (74%) Frame = +3 Query: 3 LERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLXLFC 155 LE G+KG+GDGTVS+G++D +D+ + WTG IIGP T +E RIY L + C Sbjct: 18 LEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVEC 68
>UB2V2_MOUSE (Q9D2M8) Ubiquitin-conjugating enzyme E2 variant 2 (Ubc-like| protein MMS2) Length = 144 Score = 66.2 bits (160), Expect = 2e-11 Identities = 28/51 (54%), Positives = 38/51 (74%) Frame = +3 Query: 3 LERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLXLFC 155 LE G+KG+GDGTVS+G++D +D+ + WTG IIGP T +E RIY L + C Sbjct: 18 LEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVEC 68
>UB2V2_HUMAN (Q15819) Ubiquitin-conjugating enzyme E2 variant 2 (MMS2)| (Enterocyte differentiation-associated factor EDAF-1) (Enterocyte differentiation-promoting factor) (EDPF-1) (Vitamin D3-inducible protein) (DDVit 1) Length = 144 Score = 66.2 bits (160), Expect = 2e-11 Identities = 28/51 (54%), Positives = 38/51 (74%) Frame = +3 Query: 3 LERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLXLFC 155 LE G+KG+GDGTVS+G++D +D+ + WTG IIGP T +E RIY L + C Sbjct: 18 LEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVEC 68
>MMS2_YEAST (P53152) Ubiquitin-conjugating enzyme variant MMS2 (UEV MMS2)| Length = 137 Score = 65.1 bits (157), Expect = 5e-11 Identities = 28/51 (54%), Positives = 36/51 (70%) Frame = +3 Query: 3 LERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLXLFC 155 LE+GEKG G + SYG+ D+DDI M W GTI+GP ++ HE RIY L + C Sbjct: 14 LEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDC 64
>UB2G1_RAT (P62255) Ubiquitin-conjugating enzyme E2 G1 (EC 6.3.2.19)| (Ubiquitin-protein ligase G1) (Ubiquitin carrier protein G1) (E217K) (UBC7) Length = 169 Score = 29.6 bits (65), Expect = 2.4 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +3 Query: 42 SYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLXL 149 S G+ D +D+Y W IIGP +T++EG +++ L Sbjct: 25 SAGLIDDNDLYR--WEVLIIGPPDTLYEGGVFKAHL 58
>UB2G1_MOUSE (P62254) Ubiquitin-conjugating enzyme E2 G1 (EC 6.3.2.19)| (Ubiquitin-protein ligase G1) (Ubiquitin carrier protein G1) (E217K) (UBC7) Length = 169 Score = 29.6 bits (65), Expect = 2.4 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +3 Query: 42 SYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLXL 149 S G+ D +D+Y W IIGP +T++EG +++ L Sbjct: 25 SAGLIDDNDLYR--WEVLIIGPPDTLYEGGVFKAHL 58
>UB2G1_HUMAN (P62253) Ubiquitin-conjugating enzyme E2 G1 (EC 6.3.2.19)| (Ubiquitin-protein ligase G1) (Ubiquitin carrier protein G1) (E217K) (UBC7) Length = 169 Score = 29.6 bits (65), Expect = 2.4 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +3 Query: 42 SYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLXL 149 S G+ D +D+Y W IIGP +T++EG +++ L Sbjct: 25 SAGLIDDNDLYR--WEVLIIGPPDTLYEGGVFKAHL 58
>SYS_MESFL (Q6F2A0) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 422 Score = 29.6 bits (65), Expect = 2.4 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +3 Query: 24 IGDGTVSYGMDDADDIYMRSWTGTIIGPHNTVH 122 I + + G DD D++ +R W +I HNT H Sbjct: 110 IPNDNMPIGNDDNDNVEVRQWGNELIKKHNTPH 142
>UBC7_CAEEL (P34477) Probable ubiquitin-conjugating enzyme E2 7 (EC 6.3.2.19)| (Ubiquitin-protein ligase 7) (Ubiquitin carrier protein 7) Length = 164 Score = 29.3 bits (64), Expect = 3.1 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +3 Query: 42 SYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLXL 149 S G+ D +DIY W +IGP +T++EG ++ L Sbjct: 24 SAGLVDDNDIY--KWEVLVIGPPDTLYEGGFFKAIL 57
>UB2E1_MOUSE (P52482) Ubiquitin-conjugating enzyme E2 E1 (EC 6.3.2.19)| (Ubiquitin-protein ligase E1) (Ubiquitin carrier protein E1) (UbcM3) Length = 193 Score = 28.1 bits (61), Expect = 6.9 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 63 DDIYMRSWTGTIIGPHNTVHEGRIYQLXL 149 D+IY W TI+GP +V+EG ++ L + Sbjct: 74 DNIY--EWRSTILGPPGSVYEGGVFFLDI 100
>UB2E1_HUMAN (P51965) Ubiquitin-conjugating enzyme E2 E1 (EC 6.3.2.19)| (Ubiquitin-protein ligase E1) (Ubiquitin carrier protein E1) (UbcH6) Length = 193 Score = 28.1 bits (61), Expect = 6.9 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 63 DDIYMRSWTGTIIGPHNTVHEGRIYQLXL 149 D+IY W TI+GP +V+EG ++ L + Sbjct: 74 DNIY--EWRSTILGPPGSVYEGGVFFLDI 100
>UB2E3_MOUSE (P52483) Ubiquitin-conjugating enzyme E2 E3 (EC 6.3.2.19)| (Ubiquitin-protein ligase E3) (Ubiquitin carrier protein E3) (Ubiquitin-conjugating enzyme E2-23 kDa) (UbcM2) Length = 207 Score = 28.1 bits (61), Expect = 6.9 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 63 DDIYMRSWTGTIIGPHNTVHEGRIYQLXL 149 D+IY W TI+GP +V+EG ++ L + Sbjct: 88 DNIY--EWRSTILGPPGSVYEGGVFFLDI 114
>UB2E3_HUMAN (Q969T4) Ubiquitin-conjugating enzyme E2 E3 (EC 6.3.2.19)| (Ubiquitin-protein ligase E3) (Ubiquitin carrier protein E3) (Ubiquitin-conjugating enzyme E2-23 kDa) (UbcH9) (UbcM2) Length = 207 Score = 28.1 bits (61), Expect = 6.9 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 63 DDIYMRSWTGTIIGPHNTVHEGRIYQLXL 149 D+IY W TI+GP +V+EG ++ L + Sbjct: 88 DNIY--EWRSTILGPPGSVYEGGVFFLDI 114
>UB2E2_MOUSE (Q91W82) Ubiquitin-conjugating enzyme E2 E2 (EC 6.3.2.19)| (Ubiquitin-protein ligase E2) (Ubiquitin carrier protein E2) Length = 201 Score = 28.1 bits (61), Expect = 6.9 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 63 DDIYMRSWTGTIIGPHNTVHEGRIYQLXL 149 D+IY W TI+GP +V+EG ++ L + Sbjct: 82 DNIY--EWRSTILGPPGSVYEGGVFFLDI 108
>UB2E2_HUMAN (Q96LR5) Ubiquitin-conjugating enzyme E2 E2 (EC 6.3.2.19)| (Ubiquitin-protein ligase E2) (Ubiquitin carrier protein E2) (UbcH8) Length = 201 Score = 28.1 bits (61), Expect = 6.9 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 63 DDIYMRSWTGTIIGPHNTVHEGRIYQLXL 149 D+IY W TI+GP +V+EG ++ L + Sbjct: 82 DNIY--EWRSTILGPPGSVYEGGVFFLDI 108
>UB2EC_SPISO (Q95044) Ubiquitin-conjugating enzyme E2-C (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) Length = 177 Score = 27.7 bits (60), Expect = 9.0 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +3 Query: 57 DADDIYMRSWTGTIIGPHNTVHEGRIYQLXL 149 D D+++ W T+ GP +TV+E Y+L L Sbjct: 55 DGDNLF--KWVATLDGPKDTVYESLKYKLTL 83
>COP10_ARATH (Q9LJD7) Constitutive photomorphogenesis protein 10| Length = 182 Score = 27.7 bits (60), Expect = 9.0 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 63 DDIYMRSWTGTIIGPHNTVHEGRIYQLXL 149 D++Y W TIIGP T +EG I+ L + Sbjct: 63 DNLY--HWIATIIGPSGTPYEGGIFFLDI 89
>UBCD2_DROME (P52485) Ubiquitin-conjugating enzyme E2-24 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) Length = 232 Score = 27.7 bits (60), Expect = 9.0 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +3 Query: 63 DDIYMRSWTGTIIGPHNTVHEGRIYQLXL 149 D++Y W TI+GP +V+EG ++ L + Sbjct: 113 DNLY--EWVSTILGPPGSVYEGGVFFLDI 139
>UBC7_ARATH (Q42540) Ubiquitin-conjugating enzyme E2 7 (EC 6.3.2.19)| (Ubiquitin-protein ligase 7) (Ubiquitin carrier protein 7) Length = 166 Score = 27.7 bits (60), Expect = 9.0 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +3 Query: 42 SYGMDDADDIYMRSWTGTIIGPHNTVHEGRIY 137 S G+ D +I+ W+ TIIGP +T++EG + Sbjct: 25 SAGLVDEKNIF--EWSVTIIGPPDTLYEGGFF 54
>UBC13_ARATH (Q42541) Ubiquitin-conjugating enzyme E2 13 (EC 6.3.2.19)| (Ubiquitin-protein ligase 13) (Ubiquitin carrier protein 13) Length = 166 Score = 27.7 bits (60), Expect = 9.0 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +3 Query: 42 SYGMDDADDIYMRSWTGTIIGPHNTVHEGRIY 137 S G+ D +I+ W+ TIIGP +T++EG + Sbjct: 25 SAGLVDEKNIF--EWSVTIIGPPDTLYEGGFF 54
>PURA_NATPD (Q3ISN0) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 456 Score = 27.7 bits (60), Expect = 9.0 Identities = 19/46 (41%), Positives = 24/46 (52%) Frame = +3 Query: 12 GEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLXL 149 G++G G YG DA D+ +R G G H VHEG Y+L L Sbjct: 11 GDEGKGGIVDVYG--DAVDVVVRYQGGDNAG-HTVVHEGDEYKLSL 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,240,867 Number of Sequences: 219361 Number of extensions: 343984 Number of successful extensions: 963 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 948 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 963 length of database: 80,573,946 effective HSP length: 29 effective length of database: 74,212,477 effective search space used: 1781099448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
