ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags36m07 |
|---|---|
| Clone Library Name | barley_pub |
>RL14_PEA (P55844) Probable 60 ribosomal protein L14 (Hydroxyproline-rich| glycoprotein HRGP1) Length = 133 Score = 146 bits (368), Expect = 4e-35 Identities = 76/112 (67%), Positives = 84/112 (75%) Frame = +2 Query: 2 GRLVVIVDVVDQNRALVDAPDMIRCQMNFKRLSLTXXXXXXXXXXXXATLIKAMEEADVK 181 GRLVVIVDV+DQ RALVDAPDM R +NFKRLSLT LIKA+E ADVK Sbjct: 22 GRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKIDIKRVPKKKDLIKALEAADVK 81 Query: 182 TKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKEVA 337 KW SSWG+KLIV+K RA+LNDFDRFK+MLAKIKR +RQELAKLKK A Sbjct: 82 NKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 133
>RL14_RAT (Q63507) 60S ribosomal protein L14| Length = 213 Score = 90.9 bits (224), Expect = 2e-18 Identities = 50/111 (45%), Positives = 67/111 (60%), Gaps = 2/111 (1%) Frame = +2 Query: 2 GRLVVIVDVVDQNRALVDAP--DMIRCQMNFKRLSLTXXXXXXXXXXXXATLIKAMEEAD 175 G+LV IVDV+DQNRALVD P + R M FK + LT + KA E+AD Sbjct: 21 GKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKAD 80 Query: 176 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKK 328 + TKW + W KK+ ++R+A + DFDRFKVM AK R I+ E+ KL++ Sbjct: 81 INTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 131
>RL14_MOUSE (Q9CR57) 60S ribosomal protein L14| Length = 216 Score = 90.9 bits (224), Expect = 2e-18 Identities = 50/111 (45%), Positives = 67/111 (60%), Gaps = 2/111 (1%) Frame = +2 Query: 2 GRLVVIVDVVDQNRALVDAP--DMIRCQMNFKRLSLTXXXXXXXXXXXXATLIKAMEEAD 175 G+LV IVDV+DQNRALVD P + R M FK + LT + KA E+AD Sbjct: 21 GKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKAD 80 Query: 176 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKK 328 + TKW + W KK+ ++R+A + DFDRFKVM AK R I+ E+ KL++ Sbjct: 81 INTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 131
>RL14_HUMAN (P50914) 60S ribosomal protein L14 (CAG-ISL 7)| Length = 212 Score = 90.5 bits (223), Expect = 2e-18 Identities = 49/111 (44%), Positives = 67/111 (60%), Gaps = 2/111 (1%) Frame = +2 Query: 2 GRLVVIVDVVDQNRALVDAP--DMIRCQMNFKRLSLTXXXXXXXXXXXXATLIKAMEEAD 175 G+LV IVDV+DQNRALVD P + R M FK + LT + +A ++AD Sbjct: 21 GKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKAD 80 Query: 176 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKK 328 + TKW + W KK+ ++R+A + DFDRFKVM AK R I+ E+ KL+K Sbjct: 81 INTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQK 131
>RL14_LUMRU (O46160) 60S ribosomal protein L14| Length = 152 Score = 90.5 bits (223), Expect = 2e-18 Identities = 49/111 (44%), Positives = 65/111 (58%), Gaps = 2/111 (1%) Frame = +2 Query: 2 GRLVVIVDVVDQNRALVDAP--DMIRCQMNFKRLSLTXXXXXXXXXXXXATLIKAMEEAD 175 G+LV IVDV+DQNRALVD P + R MNFK L LT + KA E+ + Sbjct: 22 GKLVAIVDVIDQNRALVDGPCTHVARKSMNFKELELTNLKAKFPHSAKTGVVKKAWEKDE 81 Query: 176 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKK 328 + KWE S KK+ +++R +L DF+RFK+M AK R I+ E KL+K Sbjct: 82 ISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARNRLIKIEFGKLRK 132
>RL14_GRIJA (Q7XYA7) 60S ribosomal protein L14| Length = 133 Score = 84.0 bits (206), Expect = 2e-16 Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 3/110 (2%) Frame = +2 Query: 5 RLVVIVDVVDQNRALVDAPD--MIRCQMNFKRLSLTXXXXXXXXXXXXATLIKAM-EEAD 175 +LVVIVD++DQNR LVD+P + R +N KR++LT +K+ A Sbjct: 23 KLVVIVDILDQNRILVDSPSHGLKRKVINVKRIALTSIKVDDIARGAPVAEVKSKYTAAK 82 Query: 176 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLK 325 V + S WGKKL +++RA+L+DF RFKVM+A++K+ AI ELAKLK Sbjct: 83 VDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKKSKAINAELAKLK 132
>RL14_DROME (P55841) 60S ribosomal protein L14| Length = 166 Score = 74.7 bits (182), Expect = 1e-13 Identities = 47/118 (39%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Frame = +2 Query: 2 GRLVVIVDVVDQNRALVDAP--DMIRCQMNFKRLSLTXXXXXXXXXXXXATLIKAMEEAD 175 GRLV IVDV+DQNR LVD P + R + L LT + KA E+D Sbjct: 22 GRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWTESD 81 Query: 176 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKEVAA*NT 349 +K +W+ S W K +R+SLNDFDRFK+ AK +R + LKK A T Sbjct: 82 LKAQWKVSPWSVKAQNICKRSSLNDFDRFKLRYAKRQRNKLLTIAFNTLKKRTKADGT 139
>RL14_SCHPO (O94238) 60S ribosomal protein L14| Length = 134 Score = 72.4 bits (176), Expect = 7e-13 Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 2/111 (1%) Frame = +2 Query: 2 GRLVVIVDVVDQNRALVDAP--DMIRCQMNFKRLSLTXXXXXXXXXXXXATLIKAMEEAD 175 G+L VIVD+VD RAL+D+P + R + + + LT + K + D Sbjct: 23 GKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGARSGIVAKKWKAQD 82 Query: 176 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKK 328 V KW +S+W KKL +K R+ LNDFDRF VM K +R + +AK K Sbjct: 83 VCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133
>RL14B_YEAST (P38754) 60S ribosomal protein L14-B| Length = 138 Score = 71.6 bits (174), Expect = 1e-12 Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 2/108 (1%) Frame = +2 Query: 2 GRLVVIVDVVDQNRALVDAPD--MIRCQMNFKRLSLTXXXXXXXXXXXXATLIKAMEEAD 175 G+L IV+++DQ + L+D P + R +N ++ LT AT+ K A Sbjct: 30 GKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAG 89 Query: 176 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAK 319 V KW SSW KK+ ++RRA+L DF+RF+VM+ + ++ +++ LAK Sbjct: 90 VCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137
>RL14A_YEAST (P36105) 60S ribosomal protein L14-A| Length = 138 Score = 71.2 bits (173), Expect = 1e-12 Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 2/108 (1%) Frame = +2 Query: 2 GRLVVIVDVVDQNRALVDAPD--MIRCQMNFKRLSLTXXXXXXXXXXXXATLIKAMEEAD 175 G+L IV+++DQ + L+D P + R +N ++ LT AT+ K A Sbjct: 30 GKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAA 89 Query: 176 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAK 319 V KW SSW KK+ ++RRA+L DF+RF+VM+ + ++ +++ LAK Sbjct: 90 VCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137
>RL14_DROVI (Q95ZE8) 60S ribosomal protein L14| Length = 160 Score = 70.5 bits (171), Expect = 3e-12 Identities = 44/118 (37%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Frame = +2 Query: 2 GRLVVIVDVVDQNRALVDAP--DMIRCQMNFKRLSLTXXXXXXXXXXXXATLIKAMEEAD 175 GRLV IVDV+DQNR LVD P + R + L LT + KA ++D Sbjct: 22 GRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWVDSD 81 Query: 176 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKEVAA*NT 349 +K +W+ S W K +R+ LNDFDRFK+ AK +R + LKK + T Sbjct: 82 LKAQWKVSPWSVKAQNICKRSQLNDFDRFKLRYAKRQRNKLLTIAFNTLKKRTKSDGT 139
>RL14_TRYCO (P55843) Probable 60S ribosomal protein L14 (23 kDa cell surface| protein homolog) Length = 184 Score = 41.2 bits (95), Expect = 0.002 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Frame = +2 Query: 5 RLVVIVDVVDQNRALVDAPD---MIRCQMNFKRLSLTXXXXXXXXXXXXATLIKAMEEAD 175 R+ VIVD+VD NR LV+ P M R + K + L +AM A Sbjct: 23 RVGVIVDIVDANRVLVENPSDVKMWRHVQSLKNVEPLRLCVPISRNCSSKVLKEAMATAK 82 Query: 176 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKR 289 K+ N+ ++ +K A DF+R+++ +AK R Sbjct: 83 TLEKYANTKSAIRIAAKKAFAESTDFERYQLRVAKRSR 120
>RL14_TRYBB (P55842) Probable 60S ribosomal protein L14 (23 kDa cell surface| protein homolog) Length = 189 Score = 38.9 bits (89), Expect = 0.008 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%) Frame = +2 Query: 5 RLVVIVDVVDQNRALVDAP---DMIRCQMNFKRLSLTXXXXXXXXXXXXATLIKAMEEAD 175 R+ VIVD+VD NR LV+ P M R N K + L +A+E Sbjct: 23 RVGVIVDIVDANRVLVENPCEQKMWRHVQNLKNVEPLKFCVSISRNCSTKALKEALESKK 82 Query: 176 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKR 289 V K+ + + +K A DF+R+++ +AK R Sbjct: 83 VLEKYAATKVRRPHRAKKAFAESTDFERYQLRVAKRSR 120
>RL14_LEIDO (Q25278) Probable 60S ribosomal protein L14 (23 kDa cell surface| protein) (LDP 23) Length = 175 Score = 38.5 bits (88), Expect = 0.011 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Frame = +2 Query: 5 RLVVIVDVVDQNRALVDAPD---MIRCQMNFKRLSLTXXXXXXXXXXXXATLIKAMEEAD 175 R+ VIVD+VD NR LV+ P+ M R N K + L A+ + Sbjct: 23 RVGVIVDIVDANRVLVENPEDAKMWRHVQNLKNVEPLKYCVSVSRNCSAKALKDALASSK 82 Query: 176 VKTKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKR 289 K+ + ++ +K A+ DF+R+++ +A+ R Sbjct: 83 ALEKYAKTRTAARVEAKKACAASTDFERYQLRVARRSR 120
>RL14E_AERPE (Q9YDD7) 50S ribosomal protein L14e| Length = 100 Score = 31.6 bits (70), Expect = 1.3 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Frame = +2 Query: 2 GRLVVIVDVVDQNRALVDAPDMI----RCQMNFKRLSLTXXXXXXXXXXXXATLIKAMEE 169 GR VIVD++D+N LV P + R ++N + + ++KA+EE Sbjct: 20 GRKCVIVDIIDENFVLVTGPKSLTGVRRRRVNIDHIEILDKKVDIQKGASDEEVLKALEE 79 Query: 170 A 172 A Sbjct: 80 A 80
>C71C1_MAIZE (Q43250) Cytochrome P450 71C1 (EC 1.14.-.-) (Benzoxazineless 4)| Length = 535 Score = 29.6 bits (65), Expect = 5.0 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -1 Query: 194 SPIWFSHQLPPWP*SKLPFWGY 129 SP W H+LPP P KLP G+ Sbjct: 47 SPKWKQHRLPPTPPGKLPIIGH 68
>LNK_HUMAN (Q9UQQ2) Lymphocyte-specific adapter protein Lnk (Signal| transduction protein Lnk) (Lymphocyte adapter protein) Length = 575 Score = 29.6 bits (65), Expect = 5.0 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -1 Query: 206 PRSCSPIWFSHQLPPWP*SKLPFWG 132 P SC+ + F LP W LP WG Sbjct: 469 PGSCNTVLFPFSLPHWDSESLPHWG 493
>JHD3B_DROME (Q9V6L0) Probable JmjC domain-containing histone demethylation| protein 3B (EC 1.14.11.-) Length = 452 Score = 29.6 bits (65), Expect = 5.0 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = -2 Query: 292 TPLNLSQHDLEPVKVIQRCSSLLNNKLLAPGAVLPFGFHISFLHGLD 152 +P L QHD+ K+ Q ++ PFG+H F HG + Sbjct: 244 SPQILKQHDVPVSKITQEAGEIM--------ITFPFGYHAGFNHGFN 282 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,355,876 Number of Sequences: 219361 Number of extensions: 1100576 Number of successful extensions: 2986 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2890 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2973 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
