Clone Information

BLAST Search Result

Clone Name	bags37b06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysi...	36	0.026
2	AP3B1_MOUSE (Q9Z1T1) AP-3 complex subunit beta-1 (Adapter-relate...	33	0.22
3	NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurof...	32	0.38
4	PACE1_MOUSE (Q9DBQ7) Protein-associating with the carboxyl-termi...	31	0.64
5	PI52A_PIG (O13010) Phosphatidylinositol-4-phosphate 5-kinase typ...	30	1.1
6	PI52A_HUMAN (P48426) Phosphatidylinositol-4-phosphate 5-kinase t...	30	1.1
7	DAXX_MOUSE (O35613) Death domain-associated protein 6 (Daxx)	30	1.1
8	JARD2_MOUSE (Q62315) Jumonji protein (Jumonji/ARID domain-contai...	30	1.4
9	YHJ6_YEAST (P38770) Hypothetical 53.4 kDa protein in SLT2-PUT2 i...	30	1.4
10	SMI2_DEBHA (Q6BJY4) KNR4/SMI1 homolog 2	30	1.4
11	DXR_IDILO (Q5QUF4) 1-deoxy-D-xylulose 5-phosphate reductoisomera...	30	1.4
12	NU5M_RHIST (P50367) NADH-ubiquinone oxidoreductase chain 5 (EC 1...	30	1.9
13	PRDM2_HUMAN (Q13029) PR domain zinc finger protein 2 (PR domain-...	30	1.9
14	BRCA1_MACMU (Q6J6I9) Breast cancer type 1 susceptibility protein...	30	1.9
15	NFM_BOVIN (O77788) Neurofilament triplet M protein (160 kDa neur...	29	2.4
16	PI52A_CHICK (Q5F356) Phosphatidylinositol-4-phosphate 5-kinase t...	29	2.4
17	ADA2B_HORSE (O77721) Alpha-2B adrenergic receptor (Alpha-2B adre...	29	2.4
18	E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78)	29	2.4
19	NEST_RAT (P21263) Nestin	29	2.4
20	GLU2B_BOVIN (Q28034) Glucosidase 2 beta subunit precursor (Gluco...	29	2.4
21	BRCA1_PONPY (Q6J6J0) Breast cancer type 1 susceptibility protein...	29	2.4
22	BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein...	29	2.4
23	RPOD_PSEFL (P52326) RNA polymerase sigma factor rpoD (Sigma-70)	29	3.2
24	MAK5_CANAL (Q59ZH9) ATP-dependent RNA helicase MAK5 (EC 3.6.1.-)	29	3.2
25	INVO_CANFA (P18174) Involucrin	28	4.2
26	IE68_SHV21 (Q01042) Immediate-early protein	28	4.2
27	FBN2_HUMAN (P35556) Fibrillin-2 precursor	28	5.4
28	RNB_HAEDU (Q7VLX8) Exoribonuclease 2 (EC 3.1.13.1) (Exoribonucle...	28	5.4
29	FBN2_MOUSE (Q61555) Fibrillin-2 precursor	28	5.4
30	PI52A_MOUSE (O70172) Phosphatidylinositol-4-phosphate 5-kinase t...	28	5.4
31	GERIA_BACCE (O85467) Spore germination protein gerIA	28	5.4
32	BFR2_EMENI (Q5AW04) Protein bfr2	28	5.4
33	SWC3_CANGA (Q6FRS1) SWR1-complex protein 3	28	7.1
34	GNL1_MOUSE (P36916) Guanine nucleotide-binding protein-like 1 (G...	28	7.1
35	ASK2_ARATH (P43292) Serine/threonine-protein kinase ASK2 (EC 2.7...	28	7.1
36	SPL16_ARATH (Q700C2) Squamosa promoter-binding-like protein 16 (...	28	7.1
37	SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)	28	7.1
38	MEGF9_HUMAN (Q9H1U4) Multiple epidermal growth factor-like domai...	28	7.1
39	AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor	28	7.1
40	RPTN_MOUSE (P97347) Repetin	28	7.1
41	RCOR_CAEEL (Q18919) REST corepressor spr-1 (CoREST) (Suppressor ...	28	7.1
42	DPOLA_XENLA (Q9DE46) DNA polymerase alpha catalytic subunit (EC ...	27	9.3
43	YATE_SCHPO (Q09779) Hypothetical protein C1D4.14 in chromosome I	27	9.3
44	MIA40_GIBZE (Q4IK03) Intermembrane space import and assembly pro...	27	9.3
45	GNL1_PANTR (Q7YR35) Guanine nucleotide-binding protein-like 1 (G...	27	9.3
46	GNL1_HUMAN (P36915) Guanine nucleotide-binding protein-like 1 (G...	27	9.3
47	ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein ...	27	9.3
48	T2FA_DROME (Q05913) Transcription initiation factor IIF alpha su...	27	9.3
49	PP4R2_KLULA (Q6CPD5) Serine/threonine-protein phosphatase 4 regu...	27	9.3
50	NUCL_CHICK (P15771) Nucleolin (Protein C23)	27	9.3
51	V2A_PSVJ (P28727) RNA-directed RNA polymerase 2A (EC 2.7.7.48) (...	27	9.3
52	TCOF_MOUSE (O08784) Treacle protein (Treacher Collins syndrome p...	27	9.3
53	AT1B4_HUMAN (Q9UN42) X/potassium-transporting ATPase beta-m chai...	27	9.3

>SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysine-4 specific|
            SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase
            complex subunit SET1) (SET-domain-containing protein 1A)
          Length = 1707

 Score = 35.8 bits (81), Expect = 0.026
 Identities = 31/120 (25%), Positives = 44/120 (36%), Gaps = 1/120 (0%)
 Frame = +3

Query: 6    EEESQHVEFECEEMDDSEDEQAQGTEPC-STTNKGTSTSVACSELQENNDQCQTQQGLKQ 182
            EE SQ    E +E DD EDE+ +  E    TT K T  S    E  +++ +C        
Sbjct: 966  EEASQESSSEKDEEDDEEDEEDEDREEAVDTTKKETEVSDGEDEESDSSSKC-------- 1017

Query: 183  VAKQGVXXXXXXXXXXXXXPVRAKSKPTDARSTGTRKSQRSKASXTSESSQAKMXEEAGP 362
                                    S  + + S+ +  S  S +S +SESS     EE  P
Sbjct: 1018 ------SLYADSDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERP 1071

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>AP3B1_MOUSE (Q9Z1T1) AP-3 complex subunit beta-1 (Adapter-related protein complex|
            3 beta-1 subunit) (Beta3A-adaptin) (Adaptor protein
            complex AP-3 beta-1 subunit) (Clathrin assembly protein
            complex 3 beta-1 large chain)
          Length = 1105

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
 Frame = +3

Query: 3    SEEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACSELQENNDQCQTQQGLKQ 182
            SEEE    E E EE ++ EDE    ++  S +  G+ +    +  +++++   + Q   +
Sbjct: 680  SEEEEDEDEDEDEEEEEKEDEDENPSDSSSDSESGSGSESGDTGTEDSSEDSSSGQD-SE 738

Query: 183  VAKQGVXXXXXXXXXXXXXPVRAKSKPTDARSTGTRKSQ-RSKASXTSESSQAKMXEEAG 359
               Q                 ++ S+  + ++  ++ S+  S+ S + E S ++   E+G
Sbjct: 739  TGSQAEAERQKVAKRNSKTKRKSDSENREKKNENSKASESSSEESSSMEDSSSESESESG 798

Query: 360  PE 365
             +
Sbjct: 799  SD 800

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>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurofilament|
           protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1072

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACSELQE-NNDQCQTQQGLKQ 182
           EE+++ ++   EE+ + ED++AQG E       G   +      +E  + + +T+  +K+
Sbjct: 454 EEQTEEIQVT-EEVTEEEDKEAQGEEEEEAEEGGEEAATTSPPAEEAASPEKETKSPVKE 512

Query: 183 VAKQGVXXXXXXXXXXXXXPVRAKSKPTDARSTGTRKSQRSKASXTSESSQAKMXEEA 356
            AK                P  AKS P + +S    KS     S     S A++   A
Sbjct: 513 EAK---SPAEAKSPAEAKSPAEAKS-PAEVKSPAEVKSPAEAKSPAEAKSPAEVKSPA 566

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>PACE1_MOUSE (Q9DBQ7) Protein-associating with the carboxyl-terminal domain of|
           ezrin (Ezrin-binding protein PACE-1) (SCY1-like protein
           3)
          Length = 734

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
 Frame = +3

Query: 12  ESQHVEFECEEMDDSEDEQAQGTE---------PCSTTNKGTSTSVACSELQENNDQCQT 164
           ESQH     EE+   + E + GTE         P   T+ G STS A   L E +   Q+
Sbjct: 555 ESQHTNLTAEEVTWDDGEASFGTEINSTATASAPVPVTSGGQSTSAALVPLTEESKPLQS 614

Query: 165 QQGLKQVAKQ 194
               K   +Q
Sbjct: 615 SPSSKTSHRQ 624

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>PI52A_PIG (O13010) Phosphatidylinositol-4-phosphate 5-kinase type-2 alpha (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II alpha) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-alpha) (PtdIns(4)P-5-kinase isoform 2-alpha)
           (PIP5KII-alpha)
          Length = 406

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 9   EESQHVEFECEEMDDSEDEQAQGTEPCST 95
           E ++  E ECEE D  E+ ++ GT P  T
Sbjct: 284 ERAEQEEVECEENDGEEEGESDGTHPVGT 312

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>PI52A_HUMAN (P48426) Phosphatidylinositol-4-phosphate 5-kinase type-2 alpha (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II alpha) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-alpha) (PtdIns(4)P-5-kinase isoform 2-alpha)
           (PIP5KII-alpha
          Length = 406

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 9   EESQHVEFECEEMDDSEDEQAQGTEPCST 95
           E ++  E ECEE D  E+ ++ GT P  T
Sbjct: 284 ERAEQEEVECEENDGEEEGESDGTHPVGT 312

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>DAXX_MOUSE (O35613) Death domain-associated protein 6 (Daxx)|
          Length = 739

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACSEL--QENNDQCQTQQGLK 179
           EEE +  E E E+++  +++Q    E     N+G  +  + S+   + N++  +  +  +
Sbjct: 466 EEEKEATEDEDEDLEQLQEDQGGDEEEEGGDNEGNESPTSPSDFFHRRNSEPAEGLRTPE 525

Query: 180 QVAKQGVXXXXXXXXXXXXXPVRAKSKPTDARSTGTRKSQRSKASXTSESSQAKMXEEAG 359
              K+G+             P       TDA S+G +  +      +  S  A++  EA 
Sbjct: 526 GQQKRGLTETPASPPGASLDP-----PSTDAESSGEQLLEPLLGDESPVSQLAELEMEAL 580

Query: 360 PEHK 371
           PE +
Sbjct: 581 PEER 584

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>JARD2_MOUSE (Q62315) Jumonji protein (Jumonji/ARID domain-containing protein 2)|
          Length = 1234

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 1/123 (0%)
 Frame = +3

Query: 3   SEEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACSELQENNDQCQTQQGLKQ 182
           S+E +   E   E   DS  EQA G +P + +   +S     +  Q        Q   KQ
Sbjct: 243 SKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSAKGLAANHQPPPSHRSAQDLRKQ 302

Query: 183 VAK-QGVXXXXXXXXXXXXXPVRAKSKPTDARSTGTRKSQRSKASXTSESSQAKMXEEAG 359
           V+K  GV                 + +P+ ++ T    +  +K + T   ++ ++ +E  
Sbjct: 303 VSKVNGVTRMSSLGAGTNSAKKIREVRPSPSK-TVKYTATVTKGTVTYTKAKRELVKETK 361

Query: 360 PEH 368
           P H
Sbjct: 362 PNH 364

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>YHJ6_YEAST (P38770) Hypothetical 53.4 kDa protein in SLT2-PUT2 intergenic|
           region
          Length = 471

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/87 (22%), Positives = 36/87 (41%)
 Frame = +3

Query: 9   EESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACSELQENNDQCQTQQGLKQVA 188
           +E +    E +E+DD+  E+    EP  T  + T  +V   E++   ++ Q Q+   +  
Sbjct: 70  DEEEDDRMEIDEVDDTSFEEEYNNEPIETHTEATENAVV-EEIEATPEERQKQE-KNESQ 127

Query: 189 KQGVXXXXXXXXXXXXXPVRAKSKPTD 269
            Q V              ++A   PTD
Sbjct: 128 DQSVEEVENIVSPHRSTVIKALLSPTD 154

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>SMI2_DEBHA (Q6BJY4) KNR4/SMI1 homolog 2|
          Length = 590

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACSELQ-----ENNDQCQTQQ 170
           +EE +  E E E  +  EDEQ +  +P + T K   +  A  + Q     E ND  +  +
Sbjct: 524 QEEEKEQEKEHENEEAPEDEQNEDAKPLTKTQKKNQSKKAKKQQQKQKQNETNDVEEVAE 583

Query: 171 GLKQVA 188
            L  VA
Sbjct: 584 DLNDVA 589

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>DXR_IDILO (Q5QUF4) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 397

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 262 GLDFA-LTGLALEDPRDFRFDLTPCLATCFNPCWV*HWSLFSCNSEQATDVEVPLFVVE 89
           GLDF  +  L  + P   R+   PCL      CW   W+  + N+  A +V V  F+ E
Sbjct: 295 GLDFTQIAELTFKQPEAQRY---PCLQLAIEACWEGQWATTALNA--ANEVAVAAFLQE 348

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>NU5M_RHIST (P50367) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 654

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = -1

Query: 370 LCSGPASSCILAWLDS---LVXEAFD----R*LFLVPVLLASVGLDFALTGLALEDPRDF 212
           LC  P S  +++W+DS   LV   F         L+PVL+ S  +    T    EDP + 
Sbjct: 52  LCGSPVSIKLMSWIDSEFLLVSWGFIYDSLTVSMLLPVLIVSALVHIYSTNYMSEDPHNQ 111

Query: 211 RF 206
           RF
Sbjct: 112 RF 113

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>PRDM2_HUMAN (Q13029) PR domain zinc finger protein 2 (PR domain-containing|
           protein 2) (Retinoblastoma protein-interacting
           zinc-finger protein) (Zinc finger protein RIZ)
           (MTE-binding protein) (MTB-ZF) (GATA-3-binding protein
           G3B)
          Length = 1718

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSEDE-QAQGTEPCSTTNKGT--STSVACSELQEN 146
           EEE +  E E EE DD +DE + +G E  S  N+ +     + C E  E+
Sbjct: 269 EEEEEEEEDEEEEEDDDDDELEDEGEEEASMPNENSVKEPEIRCDEKPED 318

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>BRCA1_MACMU (Q6J6I9) Breast cancer type 1 susceptibility protein homolog|
          Length = 1863

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 6    EEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVAC-SELQENNDQCQTQQG 173
            +++S  V  ECE+ ++++ ++    +P  T N     SV C  +   +N +C  + G
Sbjct: 892  KKQSPKVTSECEQKEENQGKKESNIKPVQTVNITAGFSVVCQKDKPVDNAKCSIKGG 948

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>NFM_BOVIN (O77788) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
          Length = 925

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 6/128 (4%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACSELQENNDQCQTQQGLKQV 185
           EEE +  E E +E ++ E+E A+  +      +G S     SE +E     Q ++G  + 
Sbjct: 523 EEEGEKEEEEGQEEEEEEEEAAKSDQ----AEEGGSEKEGSSEKEEGE---QEEEGETEA 575

Query: 186 AKQGVXXXXXXXXXXXXXPVRAKSKPTD--ARSTGTRKSQRSKA----SXTSESSQAKMX 347
             +G                  +  P +  A      K +++K+    S T++S  AK  
Sbjct: 576 EGEGEEAAAEAKEEKKMEEKAEEVAPKEELAAEAKVEKPEKAKSPVAKSPTTKSPTAKSP 635

Query: 348 EEAGPEHK 371
           E   PE K
Sbjct: 636 EAKSPEAK 643

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>PI52A_CHICK (Q5F356) Phosphatidylinositol-4-phosphate 5-kinase type-2 alpha (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II alpha) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-alpha) (PtdIns(4)P-5-kinase isoform 2-alpha)
           (PIP5KII-alpha
          Length = 405

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 9   EESQHVEFECEEMDDSEDEQAQGTEPCST 95
           E ++  E ECEE D  ++ ++ GT P  T
Sbjct: 283 ERAEQEEVECEENDGEDEGESDGTHPIGT 311

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>ADA2B_HORSE (O77721) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor) (Fragment)
          Length = 389

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 24  VEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACS 131
           +E E EE ++ E+E+ +G E C       S + ACS
Sbjct: 280 LEEEAEEEEEEEEEEEEGEEECEPQALPASPASACS 315

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>E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78)|
          Length = 866

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSEDEQAQGTE 83
           +EE Q  E E EE D+ EDE+ +G E
Sbjct: 48  DEEEQPSEEEAEEEDNEEDEEEEGEE 73

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>NEST_RAT (P21263) Nestin|
          Length = 1805

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +3

Query: 6    EEESQHVEFECE-EMDDS----EDEQAQGTEPCSTTNKGTSTSVACSELQENNDQCQTQQ 170
            E+E Q VE + E E  DS    EDE  +   P    N  +  S+A  + +E   + +TQQ
Sbjct: 941  EKEDQMVESQLEKESQDSGKSLEDESQETFGPLEKENAESLRSLAGQDQEEQKLEQETQQ 1000

Query: 171  GLKQVAKQ 194
             L+ V  +
Sbjct: 1001 TLRAVGNE 1008

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>GLU2B_BOVIN (Q28034) Glucosidase 2 beta subunit precursor (Glucosidase II beta|
           subunit) (Protein kinase C substrate, 60.1 kDa protein,
           heavy chain) (PKCSH) (80K-H protein) (Vacuolar
           system-associated protein 60) (VASAP-60)
          Length = 533

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSEDEQAQGTEP 86
           EE+    + E EE +D EDE +QG +P
Sbjct: 314 EEDEDEEDEETEEDEDEEDEDSQGEQP 340

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>BRCA1_PONPY (Q6J6J0) Breast cancer type 1 susceptibility protein homolog|
          Length = 1863

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 6    EEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACSE 134
            +++S  V FECE+ ++++ +     +P  T N      V C +
Sbjct: 893  KKQSPKVTFECEQKEENQGKNESNIKPVQTANITAGFPVVCQK 935

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>BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein homolog|
          Length = 1863

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 6    EEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACSE 134
            +++S  V FECE+ ++++ +     +P  T N      V C +
Sbjct: 893  KKQSPKVTFECEQKEENQGKNESNIKPVQTVNITAGFPVVCQK 935

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>RPOD_PSEFL (P52326) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 615

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 48  DDSEDEQAQGTEPCSTTNKGTSTSVACSELQENNDQCQ-TQQGLKQVAKQ 194
           DDSEDE+A+ TE       G    +A        DQ + T++ LK+  ++
Sbjct: 194 DDSEDEEAEATEDEEEAESGPDPVIAAQRFGAVADQMEVTRKALKKHGRE 243

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>MAK5_CANAL (Q59ZH9) ATP-dependent RNA helicase MAK5 (EC 3.6.1.-)|
          Length = 782

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACS------ELQENNDQ 155
           EEE +  E E EE ++ E+E+  G E      +  +TS   S      +L E+ND+
Sbjct: 116 EEEEEEEEEEEEEEEEEEEEEFAGFEDDENNQEDANTSERVSNNDKDDKLAESNDE 171

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>INVO_CANFA (P18174) Involucrin|
          Length = 285

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +3

Query: 3   SEEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACSELQENNDQCQTQQ 170
           S+E+  H+E E ++ +  + EQ QG E C    +  +      ++     Q Q +Q
Sbjct: 149 SQEKELHLEQEQQKEELQQQEQQQGKEQCEKHQEAKNLEQQLEQIGAQRKQQQKEQ 204

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>IE68_SHV21 (Q01042) Immediate-early protein|
          Length = 407

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/120 (16%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACSELQENNDQC-QTQQGLKQ 182
           EEE++  E E EE +++E+E+A+  E      +      A  E +E  ++  + ++  ++
Sbjct: 130 EEEAEEEEAEEEEAEEAEEEEAEEAE------EEAEEEEAEEEAEEEAEEAEEAEEEAEE 183

Query: 183 VAKQGVXXXXXXXXXXXXXPVRAKSKPTDARSTGTRKSQRSKASXTSESSQAKMXEEAGP 362
            A++                   +++  +  +    +++ ++ +        +  EEAGP
Sbjct: 184 EAEEAEEAEEAEEAEEEAEEAEEEAEEAEEEAEEAEEAEEAEEAEEEAEEAEEEEEEAGP 243

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>FBN2_HUMAN (P35556) Fibrillin-2 precursor|
          Length = 2911

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
 Frame = +3

Query: 60   DEQAQGTEPCSTTNKGTSTSVACS-----ELQENN------DQCQTQQ 170
            DE +Q  +PC+   K T  S  CS      LQE+       D+CQT+Q
Sbjct: 2492 DECSQSPKPCNYICKNTEGSYQCSCPRGYVLQEDGKTCKDLDECQTKQ 2539

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>RNB_HAEDU (Q7VLX8) Exoribonuclease 2 (EC 3.1.13.1) (Exoribonuclease II)|
           (Ribonuclease II) (RNase II)
          Length = 659

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 15  SQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACSELQENNDQ 155
           +Q VEF+CE  D S     +G         G    + CS L EN D+
Sbjct: 574 TQGVEFDCEITDIS-----RGGIRAKVLENGAQIFIPCSTLHENKDE 615

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>FBN2_MOUSE (Q61555) Fibrillin-2 precursor|
          Length = 2907

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
 Frame = +3

Query: 60   DEQAQGTEPCSTTNKGTSTSVACS-----ELQENN------DQCQTQQ 170
            DE +Q  +PC+   K T  S  CS      LQE+       D+CQT+Q
Sbjct: 2486 DECSQSPKPCNFICKNTKGSYQCSCPRGYVLQEDGKTCKDLDECQTKQ 2533

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>PI52A_MOUSE (O70172) Phosphatidylinositol-4-phosphate 5-kinase type-2 alpha (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II alpha) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-alpha) (PtdIns(4)P-5-kinase isoform 2-alpha)
           (PIP5KII-alpha
          Length = 405

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 9   EESQHVEFECEEMDDSEDEQAQGTEPCST 95
           E ++  E ECEE D  E+ ++  T P  T
Sbjct: 284 ERAEQEEVECEENDGEEEGESDSTHPIGT 312

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>GERIA_BACCE (O85467) Spore germination protein gerIA|
          Length = 663

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 22/99 (22%), Positives = 37/99 (37%)
 Frame = +3

Query: 39  EEMDDSEDEQAQGTEPCSTTNKGTSTSVACSELQENNDQCQTQQGLKQVAKQGVXXXXXX 218
           E+ D S+D+Q    +  S+ +K           Q+N  Q  + Q  +Q  KQG       
Sbjct: 50  EQKDSSQDKQQSAKQGDSSQDK-----------QQNPKQEDSSQDKQQNPKQGDSSQDKQ 98

Query: 219 XXXXXXXPVRAKSKPTDARSTGTRKSQRSKASXTSESSQ 335
                  P + K +      +   K Q +K   +S+  Q
Sbjct: 99  QSAKQKDPSQDKQQNPKQEDSSQDKQQSAKQGDSSQDKQ 137

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>BFR2_EMENI (Q5AW04) Protein bfr2|
          Length = 576

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSEDEQAQGTEP 86
           EEE +  E E EE D+SEDE+ +  +P
Sbjct: 185 EEEEEEEEEEEEEDDESEDEEEKTAKP 211

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>SWC3_CANGA (Q6FRS1) SWR1-complex protein 3|
          Length = 659

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 246 RAKSKPTDARSTG--TRKSQRSKASXTSESSQAKMXEEA 356
           +A+SKPTD+  T   + KS+  + S T+ES +    E+A
Sbjct: 360 KAQSKPTDSNETSADSSKSEILQESKTNESDKKATAEQA 398

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>GNL1_MOUSE (P36916) Guanine nucleotide-binding protein-like 1 (GTP-binding|
           protein MMR1)
          Length = 430

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSE---DEQAQGTEPCSTTNKGTSTSVACSELQENNDQC 158
           EEE + +   CEE  + +   DE+ +G E   T++ G+  +          D+C
Sbjct: 377 EEEEEELSSSCEEEGEEDRDADEEGEGDEDTPTSDPGSCLTARNPYALLGEDEC 430

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>ASK2_ARATH (P43292) Serine/threonine-protein kinase ASK2 (EC 2.7.11.1)|
          Length = 353

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSEDE---QAQGTEPCSTTNK 104
           EEE + VE E EE +D EDE     +  + C  ++K
Sbjct: 317 EEEEEDVEAEVEEEEDDEDEYEKHVKEAQSCQESDK 352

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>SPL16_ARATH (Q700C2) Squamosa promoter-binding-like protein 16 (SPL1-related|
           protein 3)
          Length = 988

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -2

Query: 153 GRCFLATLNKQLMLKFPYL*SNMVLCPELAHLQN--HPFPHIQTQ 25
           GRCF+   N      FP + +N  +C EL  L+   HP   I+ Q
Sbjct: 654 GRCFIELENGLRGDNFPLIIANATICKELNRLEEEFHPKDVIEEQ 698

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>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1772

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 24/112 (21%), Positives = 42/112 (37%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACSELQENNDQCQTQQGLKQV 185
           EEE +    E EE ++ E+EQ +  E                  QE  ++ + +Q  +  
Sbjct: 284 EEEEEEELVEEEEEEEEEEEQEEDEE------------------QEQQEEEEEEQEEEVT 325

Query: 186 AKQGVXXXXXXXXXXXXXPVRAKSKPTDARSTGTRKSQRSKASXTSESSQAK 341
           +++G              P +AK K   A  T   KS+ S  S +    + +
Sbjct: 326 SRRG---------SRRSAPTKAKGKSKTASKTSKSKSKASSKSKSKSKGKGQ 368

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>MEGF9_HUMAN (Q9H1U4) Multiple epidermal growth factor-like domains 9 precursor|
           (EGF-like domain-containing protein 5) (Multiple
           EGF-like domain protein 5)
          Length = 600

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = +3

Query: 36  CEEMDDSEDEQAQGTE-----PCSTTNKGTSTSVACSELQENNDQCQ 161
           CEE  +   +    T+     PCS      S S+  SEL+   DQC+
Sbjct: 327 CEECKEGFYQSPDATKECLRCPCSAVTSTGSCSIKSSELEPECDQCK 373

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>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor|
          Length = 725

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/95 (17%), Positives = 33/95 (34%)
 Frame = +3

Query: 54  SEDEQAQGTEPCSTTNKGTSTSVACSELQENNDQCQTQQGLKQVAKQGVXXXXXXXXXXX 233
           S    +  T P ST+   +STS + S    ++    T       +               
Sbjct: 190 STSPSSTSTSPSSTSTSSSSTSTSSSSTSTSSSSTSTSPSSTSTSSSLTSTSSSSTSTSQ 249

Query: 234 XXPVRAKSKPTDARSTGTRKSQRSKASXTSESSQA 338
                + S  + + S+ +  S  +  S +S+S+ A
Sbjct: 250 SSTSTSSSSTSTSPSSTSTSSSSTSTSPSSKSTSA 284

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>RPTN_MOUSE (P97347) Repetin|
          Length = 1130

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 235 QGRSEQSPSQRMQGAQELERVNGQK 309
           +GR +QSP Q  +G Q+L    GQK
Sbjct: 706 KGRHDQSPHQGQKGRQDLSSHQGQK 730

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>RCOR_CAEEL (Q18919) REST corepressor spr-1 (CoREST) (Suppressor of presenilin|
           1)
          Length = 558

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
 Frame = +3

Query: 48  DDSEDEQAQGTEPCS--TTNKGTSTSVACSELQENNDQCQTQQGLKQVAKQGVXXXXXXX 221
           DD E  Q++  +  S  +T  G  T +    ++EN  + +    L++ +   V       
Sbjct: 6   DDGESAQSEKVDVPSEESTIAGPETDIPAETIEENVPEVEENTLLEEDSLVDVDS----- 60

Query: 222 XXXXXXPVRAKSKPTDARSTGTRKSQRSKASXTSESSQAKMXEEAGPEHK 371
                       +P+  RS  ++  ++ K S + ESS A+   +AG + K
Sbjct: 61  -----------PRPSQQRSKPSKSKRKRKRSSSGESSAAEPEIDAGAKVK 99

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>DPOLA_XENLA (Q9DE46) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)|
          Length = 1458

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVAC 128
           EE+S  VEF+  + D+  +E  + T   S+T K  + S+ C
Sbjct: 245 EEDSGMVEFDDGDFDEPMEEDVEITPVDSSTIKTQAQSIKC 285

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>YATE_SCHPO (Q09779) Hypothetical protein C1D4.14 in chromosome I|
          Length = 1628

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 259  LDFALTGLALEDPRDFRFDLTPCLATCFNPCW 164
            LD +LTG   ED  D  ++ T    T  NP W
Sbjct: 922  LDHSLTGSNTEDAMDIDYENTSSPNTASNPVW 953

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>MIA40_GIBZE (Q4IK03) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 391

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 243 VRAKSKPTDARSTGTRKSQRSKASXTSESSQAKMXEEAGPE 365
           ++AKS+ T A S      Q +  +  ++ S A + EEAG +
Sbjct: 98  IKAKSEETAASSKTPESQQSNPQTAAADGSPAALEEEAGQQ 138

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>GNL1_PANTR (Q7YR35) Guanine nucleotide-binding protein-like 1 (GTP-binding|
           protein HSR1)
          Length = 430

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSE---DEQAQGTEPCSTTNKGTSTSVACSELQENNDQC 158
           EEE + +   CEE  + +   DE+ +G E   T+  G+S +          D+C
Sbjct: 377 EEEEEELSSSCEEEGEEDRDADEEGEGDEETPTSAPGSSLAGRNPYALLGEDEC 430

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>GNL1_HUMAN (P36915) Guanine nucleotide-binding protein-like 1 (GTP-binding|
           protein HSR1)
          Length = 430

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSE---DEQAQGTEPCSTTNKGTSTSVACSELQENNDQC 158
           EEE + +   CEE  + +   DE+ +G E   T+  G+S +          D+C
Sbjct: 377 EEEEEELSSSCEEEGEEDRDADEEGEGDEETPTSAPGSSLAGRNPYALLGEDEC 430

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>ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein (AT|
           motif-binding factor) (AT-binding transcription factor
           1)
          Length = 3703

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 3   SEEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACSELQE 143
           +EEE +  E E EE ++ E+E+ +  E C    KG   S    EL++
Sbjct: 463 AEEEEEEEEAEEEEEEEEEEEEEEEDEGC----KGLFPSELDEELED 505

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>T2FA_DROME (Q05913) Transcription initiation factor IIF alpha subunit (EC|
           2.7.11.1) (TFIIF-alpha) (Transcription factor 5 large
           chain) (TF5A)
          Length = 577

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 134 VARKQRPVSNPTRIETGG*TGREIK 208
           +ARK RP + P  ++ GG TG++ K
Sbjct: 114 IARKYRPEAQPWILKVGGKTGKKFK 138

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>PP4R2_KLULA (Q6CPD5) Serine/threonine-protein phosphatase 4 regulatory subunit|
           2 (PP4R2)
          Length = 402

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
 Frame = +3

Query: 6   EEESQHVEFECEEMDDSEDEQAQGTE----------PCSTTNKGTSTSVACSELQENNDQ 155
           E E    EFE E+ +D EDE+    +                +  S  ++  E+ EN+DQ
Sbjct: 202 EYEEMDEEFEDEDYEDHEDEEEDEEDEDNDSDVDEMEAEEVEEDASDDISIGEIAENDDQ 261

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>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 3   SEEESQHVEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACSELQENNDQ 155
           SEEE +  + E +E DD  +++A  T P        + +       E+ D+
Sbjct: 171 SEEEEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPAKAKAESEDE 221

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>V2A_PSVJ (P28727) RNA-directed RNA polymerase 2A (EC 2.7.7.48) (protein 2A)|
          Length = 834

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 243 VRAKSKPTDARSTGTRKSQRSKASXTSESSQAKMXEEAGP 362
           V A++ PT       +KS+R +AS TS  S +      GP
Sbjct: 790 VSAQTSPTKQEGPWAQKSERVEASRTSRDSVSLFPASTGP 829

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>TCOF_MOUSE (O08784) Treacle protein (Treacher Collins syndrome protein|
           homolog)
          Length = 1320

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/71 (26%), Positives = 27/71 (38%)
 Frame = +3

Query: 153 QCQTQQGLKQVAKQGVXXXXXXXXXXXXXPVRAKSKPTDARSTGTRKSQRSKASXTSESS 332
           + + Q G K    Q V              +  K K  D  +   +KS+ S    +SESS
Sbjct: 29  EVKEQSGQKSFLTQPVTLLDIYTHWQQTSELGQKQKAEDDETLQAKKSRVSDPVSSSESS 88

Query: 333 QAKMXEEAGPE 365
             +  EEA  E
Sbjct: 89  DQEKEEEAATE 99

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>AT1B4_HUMAN (Q9UN42) X/potassium-transporting ATPase beta-m chain (X,K-ATPase|
           beta-m subunit)
          Length = 357

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 3   SEEESQHVEFECEEMDDSEDEQAQG 77
           SEEE +  E E EE ++ E+E+ QG
Sbjct: 51  SEEEEEEEEKEEEEEEEKEEEEGQG 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,559,331
Number of Sequences: 219361
Number of extensions: 813211
Number of successful extensions: 3254
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 2651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3093
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result