| Clone Name | bags37b04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X66376.1|HVJASIP H.vulgare mRNA for jasmonate-induced protein Length = 1892 Score = 1041 bits (525), Expect = 0.0 Identities = 534/537 (99%) Strand = Plus / Plus Query: 9 cctcggcatacggtccaattgtcttcaacctcgaccttcatgacggcactcgcgggcaag 68 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1161 cctcggcatacggtccaattgtcttcaacctcgaccttcatgacggcaactgcgggcaag 1220 Query: 69 ccgacgaggaggaggatgaaaagaacaccgggaggatagtgtgcgacgccattggcggcg 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1221 ccgacgaggaggaggatgaaaagaacaccgggaggatagtgtgcgacgccattggcggcg 1280 Query: 129 acttctccaactataataaggccatatcagagactgtcctcacacgctgcggccccgcgg 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1281 acttctccaactataataaggccatatcagagactgtcctcacacgctgcggccccgcgg 1340 Query: 189 aggtgatctacgcagttctaagcaacggcgtccaaggccgggtcgatgtgaagcttgctg 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1341 aggtgatctacgcagttctaagcaacggcgtccaaggccgggtcgatgtgaagcttgctg 1400 Query: 249 gcctgcagtcccgagacgaagtggttctcgtcggcaggatcgttgctcgcagcaagctgt 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1401 gcctgcagtcccgagacgaagtggttctcgtcggcaggatcgttgctcgcagcaagctgt 1460 Query: 309 tcgatttcggctgtgtgctcttctacaacgaggccgctggagtgcgcgtgcgacctgggg 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1461 tcgatttcggctgtgtgctcttctacaacgaggccgctggagtgcgcgtgcgacctgggg 1520 Query: 369 agctggtccccttggcgaggcatgcgcttgccgtgccgctgcacatgccgctcacgattg 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1521 agctggtccccttggcgaggcatgcgcttgccgtgccgctgcacatgccgctcacgattg 1580 Query: 429 agcttgacattcgtcatggtggatccggagatgaaattgttagaggcgagcttgagttca 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1581 agcttgacattcgtcatggtggatccggagatgaaattgttagaggcgagcttgagttca 1640 Query: 489 aaactgccatcgacggcctccatacaggacgtcttgttggtgtcaatgatgctgaat 545 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1641 aaactgccatcgacggcctccatacaggacgtcttgttggtgtcaatgatgctgaat 1697
>emb|AJ234729.1|HVU234729 Hordeum vulgare genomic DNA fragment; clone MWG2037.uni Length = 328 Score = 180 bits (91), Expect = 3e-42 Identities = 201/237 (84%), Gaps = 13/237 (5%) Strand = Plus / Minus Query: 9 cctcggcatacggtccaattgtcttcaacctcgaccttcatgacggcactcgcgggcaag 68 ||||||||||| ||||||||||||||| ||||||||| ||||||| | |||| Sbjct: 231 cctcggcatacagtccaattgtcttcagcctcgacctccatgacg---------gacaag 181 Query: 69 ccgacgaggaggaggatgaaaagaacaccgggaggatagtgtgcgacgccattggcggcg 128 |||||||||||||||| || |||||||| ||||||||| |||||| |||||||||||| Sbjct: 180 ccgacgaggaggaggaaga---gaacaccgcgaggatagtctgcgacaccattggcggcg 124 Query: 129 acttctccaactataataaggccatatcagagactgt-cctcacacgctgcggccccgcg 187 ||||||| ||||| || | ||||||||| |||||||| | |||| ||| ||||||||| Sbjct: 123 acttctctaactacaacagggccatatcggagactgtacggcacaggctatggccccgcg 64 Query: 188 gaggtgatctacgcagttctaagcaacggcgtccaaggccgggtcgatgtgaagctt 244 |||||||||||||| || |||||||| ||| |||||||||||||||| ||||||||| Sbjct: 63 gaggtgatctacgccgtcctaagcaatggcatccaaggccgggtcgacgtgaagctt 7
>gb|BT017846.1| Zea mays clone EL01N0510E02.c mRNA sequence Length = 1034 Score = 117 bits (59), Expect = 4e-23 Identities = 136/161 (84%), Gaps = 3/161 (1%) Strand = Plus / Plus Query: 279 tcggcaggatcgttgctcgcagcaagctgttcgatttcggctgtgtgctcttctacaacg 338 |||| |||||||||||||||||||||||||| || | ||||| |||||||||||||| | Sbjct: 546 tcgggaggatcgttgctcgcagcaagctgtttgacgttggctgcgtgctcttctacaaag 605 Query: 339 aggccgc---tggagtgcgcgtgcgacctggggagctggtccccttggcgaggcatgcgc 395 ||| | ||||||| ||||||||| |||| |||||| | ||||||||| | || | Sbjct: 606 agggtgacaatggagtgaacgtgcgaccgggggggctggttcagttggcgagggaagcac 665 Query: 396 ttgccgtgccgctgcacatgccgctcacgattgagcttgac 436 | ||||||||||||||||||||||| ||||||||||||||| Sbjct: 666 tcgccgtgccgctgcacatgccgctgacgattgagcttgac 706 Score = 73.8 bits (37), Expect = 5e-10 Identities = 112/137 (81%) Strand = Plus / Plus Query: 97 cgggaggatagtgtgcgacgccattggcggcgacttctccaactataataaggccatatc 156 |||||||||| | |||||| ||| ||||| |||||||||||||| || | ||||||| Sbjct: 349 cgggaggataatctgcgactgcatcggcggagacttctccaactacaacagggccatagt 408 Query: 157 agagactgtcctcacacgctgcggccccgcggaggtgatctacgcagttctaagcaacgg 216 |||||||||| || ||| ||||| || || |||||||| || || || |||||||| Sbjct: 409 cgagactgtccaaacgggctatggccctgctgaagtgatctatgccgtcctgagcaacgg 468 Query: 217 cgtccaaggccgggtcg 233 ||||||||||||||||| Sbjct: 469 cgtccaaggccgggtcg 485
>gb|AY109619.1| Zea mays CL9605_1 mRNA sequence Length = 1251 Score = 117 bits (59), Expect = 4e-23 Identities = 131/156 (83%), Gaps = 3/156 (1%) Strand = Plus / Minus Query: 284 aggatcgttgctcgcagcaagctgttcgatttcggctgtgtgctcttctacaacgag--- 340 ||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| Sbjct: 467 aggatcgttgctcgcagcaagctgttcgacgtcggctgcgtgctcttctacaaagagggt 408 Query: 341 gccgctggagtgcgcgtgcgacctggggagctggtccccttggcgaggcatgcgcttgcc 400 | | ||||||| ||||||||| ||||| | | ||||||||| | ||||| ||| Sbjct: 407 gacaatggagtgaacgtgcgaccnnnnnagctgattcagttggcgagggaagcgctcgcc 348 Query: 401 gtgccgctgcacatgccgctcacgattgagcttgac 436 |||||||||||||||||||| ||||||||||||||| Sbjct: 347 gtgccgctgcacatgccgctgacgattgagcttgac 312 Score = 81.8 bits (41), Expect = 2e-12 Identities = 113/137 (82%) Strand = Plus / Minus Query: 97 cgggaggatagtgtgcgacgccattggcggcgacttctccaactataataaggccatatc 156 |||||||||| | |||||| ||| |||| ||||||||||||||| || | ||||||| Sbjct: 669 cgggaggatactctgcgactgcatcggcgacgacttctccaactacaacagggccatagt 610 Query: 157 agagactgtcctcacacgctgcggccccgcggaggtgatctacgcagttctaagcaacgg 216 |||||||||| || ||| |||||||| || |||||||| || || || |||||||| Sbjct: 609 cgagactgtccaaacgggctatggccccgctgaagtgatctatgccgtcctgagcaacgg 550 Query: 217 cgtccaaggccgggtcg 233 ||||||||||||||||| Sbjct: 549 cgtccaaggccgggtcg 533 Score = 40.1 bits (20), Expect = 7.4 Identities = 41/48 (85%) Strand = Plus / Minus Query: 9 cctcggcatacggtccaattgtcttcaacctcgaccttcatgacggca 56 ||||||||||| ||||||||| ||||| | || |||| ||||| |||| Sbjct: 757 cctcggcatacagtccaattgccttcaccttctacctccatgatggca 710
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 392 gcgcttgccgtgccgctgcaca 413 |||||||||||||||||||||| Sbjct: 1043232 gcgcttgccgtgccgctgcaca 1043253
>gb|AY135660.1| Aquifex pyrophilus hydrogenase small subunit (mbhS1) gene, partial cds; and hypothetical protein, phosphatidate cytidylytransferase (cds), undecaprenyl pyrophosphate (yaes), hypothetical protein, 3-deoxy-D-manno-2-octulosonate-8-phosphate synthase (kdsA), molybdenum transport system permease (modB), riboflavin synthase beta subunit (ribH), transcription termination factor (nusB), hypothetical protein, NADH dehydrogenase (nuo), cytochrome c peroxidase (ccpR), heat shock protein 70 (dnaK), and hypothetical protein genes, complete cds Length = 12698 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 agacgaagtggttctcgtcgg 282 ||||||||||||||||||||| Sbjct: 9750 agacgaagtggttctcgtcgg 9770
>gb|AC144728.11| Medicago truncatula clone mth2-6g7, complete sequence Length = 105161 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 cgaggaggaggatgaaaagaa 93 ||||||||||||||||||||| Sbjct: 79209 cgaggaggaggatgaaaagaa 79189
>emb|AJ005800.1|APH5800 Aquifex pyrophilus dnaK gene, partial Length = 1820 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 agacgaagtggttctcgtcgg 282 ||||||||||||||||||||| Sbjct: 1011 agacgaagtggttctcgtcgg 1031
>gb|AE017140.1| Yersinia pestis biovar Medievalis str. 91001 section 14 of 16 of the complete genome Length = 290393 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 catgccgctcacgattgagc 431 |||||||||||||||||||| Sbjct: 215780 catgccgctcacgattgagc 215761
>ref|XM_369803.1| Magnaporthe grisea 70-15 hypothetical protein (MG06318.4) partial mRNA Length = 3699 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 gccgacgaggaggaggatga 87 |||||||||||||||||||| Sbjct: 964 gccgacgaggaggaggatga 983
>ref|XM_421760.1| PREDICTED: Gallus gallus transcription factor Tcf4 (TCF4), mRNA Length = 4491 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 70 cgacgaggaggaggatgaaaagaa 93 ||||||||||||||| |||||||| Sbjct: 4002 cgacgaggaggaggaggaaaagaa 3979
>gb|AC140279.4| Mus musculus BAC clone RP23-338N10 from chromosome 16, complete sequence Length = 211002 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 tgcgacctggggagctggtc 376 |||||||||||||||||||| Sbjct: 153219 tgcgacctggggagctggtc 153238
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06, complete sequence Length = 187651 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 gctgtgtgctcttctacaac 337 |||||||||||||||||||| Sbjct: 159160 gctgtgtgctcttctacaac 159141
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 ggcatgcgcttgccgtgccgctgc 410 |||| ||||||||||||||||||| Sbjct: 2556802 ggcacgcgcttgccgtgccgctgc 2556779
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 catgccgctcacgattgagc 431 |||||||||||||||||||| Sbjct: 3650794 catgccgctcacgattgagc 3650813
>gb|AC122509.2| Mus musculus BAC clone RP24-443G20 from chromosome 16, complete sequence Length = 178757 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 tgcgacctggggagctggtc 376 |||||||||||||||||||| Sbjct: 51079 tgcgacctggggagctggtc 51098
>ref|XM_802673.1| Trypanosoma cruzi strain CL Brener DNA excision repair protein (Tc00.1047053508675.20) partial mRNA Length = 3357 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgacgaggaggaggatgaaa 89 |||||||||||||||||||| Sbjct: 2301 cgacgaggaggaggatgaaa 2320
>ref|XM_813897.1| Trypanosoma cruzi strain CL Brener cyclin (Tc00.1047053506945.270) partial mRNA Length = 636 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 aggaggatgaaaagaacacc 97 |||||||||||||||||||| Sbjct: 590 aggaggatgaaaagaacacc 609
>emb|AL158046.12| Human DNA sequence from clone RP5-1092K5 on chromosome 10 Contains part of the gene for a novel protein (KIAA1617) and a cytochrome c oxidase subunit VIc (COX6) pseudogene, complete sequence Length = 119265 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 aggaggaggatgaaaagaac 94 |||||||||||||||||||| Sbjct: 12194 aggaggaggatgaaaagaac 12175
>emb|Y16952.3|AME16952 Amycolatopsis balhimycina biosynthetic gene cluster for balhimycin, strain DSM 5908 Length = 66669 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 cggccccgcggaggtgatctacgc 201 |||||||||||| ||||||||||| Sbjct: 44569 cggccccgcggacgtgatctacgc 44592
>emb|Y14649.1|RLDNAKJ Rhizobium leguminosarum dnaK gene and partial dnaJ gene Length = 2934 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gacgaagtggttctcgtcgg 282 |||||||||||||||||||| Sbjct: 1217 gacgaagtggttctcgtcgg 1236
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 gcagcaagctgttcgatttc 316 |||||||||||||||||||| Sbjct: 250373 gcagcaagctgttcgatttc 250392
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 catgccgctcacgattgagc 431 |||||||||||||||||||| Sbjct: 3768499 catgccgctcacgattgagc 3768518
>emb|AJ414145.1| Yersinia pestis strain CO92 complete genome; segment 5/20 Length = 208050 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 catgccgctcacgattgagc 431 |||||||||||||||||||| Sbjct: 111725 catgccgctcacgattgagc 111744
>gb|AY113531.1| Drosophila melanogaster RE60835 full insert cDNA Length = 925 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgacgaggaggaggatgaaa 89 |||||||||||||||||||| Sbjct: 680 cgacgaggaggaggatgaaa 699
>ref|NM_135833.2| Drosophila melanogaster CG16865-RA (CG16865), mRNA Length = 915 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgacgaggaggaggatgaaa 89 |||||||||||||||||||| Sbjct: 680 cgacgaggaggaggatgaaa 699
>gb|DQ311189.1| Bombyx mori heat shock protein 70 mRNA, complete cds Length = 2266 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 atacaggacgtcttgttggt 529 |||||||||||||||||||| Sbjct: 1251 atacaggacgtcttgttggt 1270
>gb|AC092236.1|AC092236 Drosophila melanogaster, chromosome 2L, region 34D-34D, BAC clone BACR30I21, complete sequence Length = 161682 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgacgaggaggaggatgaaa 89 |||||||||||||||||||| Sbjct: 142321 cgacgaggaggaggatgaaa 142340
>gb|AC092223.1|AC092223 Drosophila melanogaster, chromosome 2L, region 34D-35X, BAC clone BACR16P12, complete sequence Length = 171598 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgacgaggaggaggatgaaa 89 |||||||||||||||||||| Sbjct: 9464 cgacgaggaggaggatgaaa 9483
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 gctgtgtgctcttctacaac 337 |||||||||||||||||||| Sbjct: 24090671 gctgtgtgctcttctacaac 24090652
>gb|AC008744.6|AC008744 Homo sapiens chromosome 19 clone CTD-2561O20, complete sequence Length = 203200 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gaagcttgctggcctgcagt 257 |||||||||||||||||||| Sbjct: 104364 gaagcttgctggcctgcagt 104383
>gb|AY752744.1| Rhizobium leguminosarum strain ATCC 10004 DnaK gene, complete cds Length = 1917 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gacgaagtggttctcgtcgg 282 |||||||||||||||||||| Sbjct: 988 gacgaagtggttctcgtcgg 1007
>gb|AE003641.3| Drosophila melanogaster chromosome 2L, section 50 of 83 of the complete sequence Length = 304772 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgacgaggaggaggatgaaa 89 |||||||||||||||||||| Sbjct: 158836 cgacgaggaggaggatgaaa 158855
>gb|AC169630.2| Mus musculus BAC clone RP23-465E13 from chromosome 16, complete sequence Length = 186404 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 tgcgacctggggagctggtc 376 |||||||||||||||||||| Sbjct: 35455 tgcgacctggggagctggtc 35474 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,719,046 Number of Sequences: 3902068 Number of extensions: 3719046 Number of successful extensions: 71480 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71241 Number of HSP's gapped (non-prelim): 235 length of query: 545 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 522 effective length of database: 17,143,297,704 effective search space: 8948801401488 effective search space used: 8948801401488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)