ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags37b01 |
|---|---|
| Clone Library Name | barley_pub |
>BIM2_ARATH (Q9CAA4) Putative transcription factor BIM2 (BES1-interacting| Myc-like protein 2) (Transcription factor EN 125) (AtbHLH 102) Length = 311 Score = 114 bits (285), Expect = 2e-25 Identities = 70/181 (38%), Positives = 98/181 (54%), Gaps = 3/181 (1%) Frame = +3 Query: 3 RFQLLRDLLPTLMQKRDKATFLLEVIEYIRFLQEKAQKYEASFPEWNQENAKLLPWSNMY 182 RFQ+LR+L+P QKRD A+FLLEVI+Y+++LQEK QKYE S+P W+QE KL PW N + Sbjct: 64 RFQILRELIPNSEQKRDTASFLLEVIDYVQYLQEKVQKYEGSYPGWSQEPTKLTPWRNNH 123 Query: 183 FRSSWKNAQSKGQIPEDASPDPSQFIRNGASPGFNITGKLDDNHTAVASAAISGAQDQAE 362 +R QS G P I NG+ PG GK +DN A I+ Q E Sbjct: 124 WR-----VQSLGNHP--------VAINNGSGPGIPFPGKFEDNTVTSTPAIIAEPQIPIE 170 Query: 363 TDHMASVSCRSADTPTNILNNVSPQSQPQWADPSG--VDDCAXNSDVL-NNQQLMIDEGT 533 +D +++ S ++ + + P QP G ++C SD L + L+I+ GT Sbjct: 171 SDKARAITGISIESQPELDDKGLPPLQPILPMVQGEQANECPATSDGLGQSNDLVIEGGT 230 Query: 534 I 536 I Sbjct: 231 I 231
>BIM1_ARATH (Q9LEZ3) Transcription factor BIM1 (BES1-interacting Myc-like| protein 1) (Transcription factor EN 126) (AtbHLH 46) Length = 530 Score = 81.6 bits (200), Expect = 1e-15 Identities = 39/58 (67%), Positives = 45/58 (77%) Frame = +3 Query: 3 RFQLLRDLLPTLMQKRDKATFLLEVIEYIRFLQEKAQKYEASFPEWNQENAKLLPWSN 176 RFQ+LR L+P QKRDKA+FLLEVIEYI+FLQEKA KY S+ WN E AKLL W + Sbjct: 295 RFQMLRQLIPNSDQKRDKASFLLEVIEYIQFLQEKADKYVTSYQGWNHEPAKLLNWQS 352
>BIM3_ARATH (Q9FMB6) Putative transcription factor BIM3 (BES1-interacting| Myc-like protein 3) (Transcription factor EN 127) (AtbHLH 141) Length = 298 Score = 70.9 bits (172), Expect = 2e-12 Identities = 36/62 (58%), Positives = 41/62 (66%), Gaps = 2/62 (3%) Frame = +3 Query: 3 RFQLLRDLLPTLM--QKRDKATFLLEVIEYIRFLQEKAQKYEASFPEWNQENAKLLPWSN 176 RFQ L D++P QKRDKA+FLLEVIEYI FLQEK YE S W Q KL+PW N Sbjct: 52 RFQSLMDIIPQNQNDQKRDKASFLLEVIEYIHFLQEKVHMYEDSHQMWYQSPTKLIPWRN 111 Query: 177 MY 182 + Sbjct: 112 SH 113
>MIS12_SCHPO (Q9Y738) Centromere protein mis12| Length = 259 Score = 32.7 bits (73), Expect = 0.66 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = +3 Query: 3 RFQLLRDLLPTLMQKRDKATFLLEVIEYIRFLQEKAQKYEASFPE 137 + QL RDL L +KR+K T + + +E I FL + + ++ + PE Sbjct: 123 KMQLRRDLRMRLSRKREKKTEIEKHLERISFLNKVPENWQVTLPE 167
>PIF3_ARATH (O80536) Phytochrome-interacting factor 3 (Phytochrome-associated| protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008) Length = 524 Score = 32.7 bits (73), Expect = 0.66 Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 9/158 (5%) Frame = +3 Query: 3 RFQLLRDLLPTLMQKRDKATFLLEVIEYIRFLQEKAQKYEASFPEWNQENAKLLPWSNMY 182 + + L++L+P K DKA+ L E IEY++ LQ + Q + + P Y Sbjct: 362 KMRALQELIPNC-NKVDKASMLDEAIEYLKSLQLQVQIMSMASGYYLPPAVMFPPGMGHY 420 Query: 183 FRSSWKNAQSKGQIPEDASPDPSQFIRNGAS----PGFNITGKLDDNHTAVASAAISGAQ 350 ++ A G PD S R G+S P F ++G + A+ +SG Sbjct: 421 PAAAAAMAMGMGMPYAMGLPDLS---RGGSSVNHGPQFQVSG-MQQQPVAMGIPRVSGGG 476 Query: 351 DQAETDHMASVSCRSA-----DTPTNILNNVSPQSQPQ 449 A + + + S R T TN +N+ P + Q Sbjct: 477 IFAGSSTIGNGSTRDLSGSKDQTTTNNNSNLKPIKRKQ 514
>MAX_RAT (P52164) Protein max (Myc-associated factor X)| Length = 160 Score = 32.0 bits (71), Expect = 1.1 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +3 Query: 6 FQLLRDLLPTLM-QKRDKATFLLEVIEYIRFLQEKAQKYEASFPEWNQENAKL 161 F LRD +P+L +K +A L + EYI++++ K ++ + ++NA L Sbjct: 43 FHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALL 95
>MAX_MOUSE (P28574) Protein max (Myc-associated factor X) (Protein myn)| (Myc-binding novel HLH/LZ protein) Length = 160 Score = 32.0 bits (71), Expect = 1.1 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +3 Query: 6 FQLLRDLLPTLM-QKRDKATFLLEVIEYIRFLQEKAQKYEASFPEWNQENAKL 161 F LRD +P+L +K +A L + EYI++++ K ++ + ++NA L Sbjct: 43 FHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNDTHQQDIDDLKRQNALL 95
>MAX_HUMAN (P61244) Protein max (Myc-associated factor X)| Length = 160 Score = 32.0 bits (71), Expect = 1.1 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +3 Query: 6 FQLLRDLLPTLM-QKRDKATFLLEVIEYIRFLQEKAQKYEASFPEWNQENAKL 161 F LRD +P+L +K +A L + EYI++++ K ++ + ++NA L Sbjct: 43 FHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALL 95
>MAX_FELCA (P61245) Protein max (Myc-associated factor X)| Length = 160 Score = 32.0 bits (71), Expect = 1.1 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +3 Query: 6 FQLLRDLLPTLM-QKRDKATFLLEVIEYIRFLQEKAQKYEASFPEWNQENAKL 161 F LRD +P+L +K +A L + EYI++++ K ++ + ++NA L Sbjct: 43 FHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALL 95
>MAX_CHICK (P52162) Protein max (Myc-associated factor X)| Length = 160 Score = 32.0 bits (71), Expect = 1.1 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +3 Query: 6 FQLLRDLLPTLM-QKRDKATFLLEVIEYIRFLQEKAQKYEASFPEWNQENAKL 161 F LRD +P+L +K +A L + EYI++++ K ++ + ++NA L Sbjct: 43 FHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALL 95
>TF3A_HUMAN (Q92664) Transcription factor IIIA (Factor A) (TFIIIA)| Length = 423 Score = 31.6 bits (70), Expect = 1.5 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 14/97 (14%) Frame = -3 Query: 343 PEIAADATAVWLSSSLPVILNPGEAPFLMNCEGSGEA-------------SSGICPLLCA 203 P+ +A+ + W + + + GE PF+ + EG G+A +G P +CA Sbjct: 103 PDCSANYSKAWKLDA-HLCKHTGERPFVCDYEGCGKAFIRDYHLSRHILTHTGEKPFVCA 161 Query: 202 FFQDDRKYMFDHGSNFAFSWFHSGNEASYFCAF-SCK 95 D+K+ F H + Y C+F CK Sbjct: 162 ANGCDQKFNTKSNLKKHFERKHENQQKQYICSFEDCK 198
>SYNPO_MOUSE (Q8CC35) Synaptopodin| Length = 929 Score = 31.6 bits (70), Expect = 1.5 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Frame = +3 Query: 72 EVIEYIRFLQEKA-QKYEASFPEWNQENAKLLPWSNMYFRSSWKNAQSKGQIPEDASPDP 248 E +R L++ A ++ E + +ENA LL + ++ S + QS P+ P P Sbjct: 245 EEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHLSQSRETQQSSPNPPDTEVPSP 304 Query: 249 SQFI-RNGASPGFNITGKLDDNHTAVASAAIS 341 + I +N +SP +T +H + +A I+ Sbjct: 305 AADINQNPSSPNATLTTLASSSHHSQPTADIN 336
>MMP13_HUMAN (P45452) Collagenase 3 precursor (EC 3.4.24.-) (Matrix| metalloproteinase-13) (MMP-13) Length = 471 Score = 31.6 bits (70), Expect = 1.5 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = +3 Query: 162 LPWSNMYFRSSWKNAQSKGQIPEDASPDPSQFIRNGASP-GFNITGKLDDNHTAVASAAI 338 L ++ Y RS + G + E+A+ ++ +R S G +TGKLDDN V Sbjct: 36 LQFAERYLRSYYHPTNLAGILKENAASSMTERLREMQSFFGLEVTGKLDDNTLDVMKKPR 95 Query: 339 SGAQDQAE 362 G D E Sbjct: 96 CGVPDVGE 103
>KCNK9_RAT (Q9ES08) Potassium channel subfamily K member 9 (Acid-sensitive| potassium channel protein TASK-3) (TWIK-related acid-sensitive K(+) channel 3) (Two pore potassium channel KT3.2) Length = 396 Score = 31.2 bits (69), Expect = 1.9 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = +3 Query: 318 AVASAAISGAQDQAETDHMASVSCRSADTPTNILNNVSPQSQPQWADPSGVDDCAXN 488 A A+AA G + + SVSCR + P ++L N +S P A P G+ C N Sbjct: 331 AAAAAATPGPSTRNVRATVHSVSCRVEEIPPDVLRNTYFRS-PFGAIPPGMHTCGEN 386
>MAX_XENLA (Q07016) Protein max (Myc-associated factor X) (xMAX)| Length = 163 Score = 31.2 bits (69), Expect = 1.9 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +3 Query: 6 FQLLRDLLPTLM-QKRDKATFLLEVIEYIRFLQEKAQKYEASFPEWNQENAKL 161 F LRD +P+L +K +A L + EYI++++ K ++ + ++NA L Sbjct: 43 FHGLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALL 95
>KEULE_ARATH (Q9C5X3) SNARE-interacting protein KEULE| Length = 666 Score = 30.8 bits (68), Expect = 2.5 Identities = 31/99 (31%), Positives = 43/99 (43%) Frame = +3 Query: 210 SKGQIPEDASPDPSQFIRNGASPGFNITGKLDDNHTAVASAAISGAQDQAETDHMASVSC 389 SKG++P++ P N SP F+ T+++SAA S +Q QA + S Sbjct: 528 SKGELPKEDFP-----CMNDPSPSFH-------GSTSLSSAA-SSSQGQA------AQSM 568 Query: 390 RSADTPTNILNNVSPQSQPQWADPSGVDDCAXNSDVLNN 506 RS TPT WA P G DD + VL + Sbjct: 569 RSRRTPT-------------WAKPRGSDDGYSSDSVLRH 594
>SRBP1_HUMAN (P36956) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) Length = 1147 Score = 30.4 bits (67), Expect = 3.3 Identities = 19/49 (38%), Positives = 26/49 (53%) Frame = +3 Query: 15 LRDLLPTLMQKRDKATFLLEVIEYIRFLQEKAQKYEASFPEWNQENAKL 161 L+DL+ K +K+ L + I+YIRFLQ QK + QEN L Sbjct: 346 LKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLK-------QENLSL 387
>NDC1_RAT (Q6AXN4) Nucleoporin NDC1 (Transmembrane protein 48)| Length = 673 Score = 30.0 bits (66), Expect = 4.3 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -3 Query: 505 LFNTSLFXAQSSTPDGSAHCGWDWGETLFKIFVGV 401 L TSLF + STPDGS+ G +G ++ G+ Sbjct: 427 LVKTSLFSPKLSTPDGSSPFGTPFGSSVVNRMAGI 461
>SRBP1_CRIGR (Q60416) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) Length = 1133 Score = 30.0 bits (66), Expect = 4.3 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +3 Query: 15 LRDLLPTLMQKRDKATFLLEVIEYIRFLQEKAQK 116 L+DL+ K +K+ L + I+YIRFLQ QK Sbjct: 340 LKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 373
>SRBP1_MOUSE (Q9WTN3) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) Length = 1134 Score = 30.0 bits (66), Expect = 4.3 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +3 Query: 15 LRDLLPTLMQKRDKATFLLEVIEYIRFLQEKAQK 116 L+DL+ K +K+ L + I+YIRFLQ QK Sbjct: 340 LKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 373
>GTR2_LEIDO (Q01441) Membrane transporter D2| Length = 558 Score = 30.0 bits (66), Expect = 4.3 Identities = 19/59 (32%), Positives = 27/59 (45%) Frame = -3 Query: 511 CWLFNTSLFXAQSSTPDGSAHCGWDWGETLFKIFVGVSADLQDTLAMWSVSA*SCAPEI 335 C FN S + S+T G CGW T F + + L D+ WS SA +C ++ Sbjct: 89 CRWFNASTYV--SNTTYGEV-CGWADRTTCFLKYSDEAGCLSDSACKWSYSANTCGNQV 144
>SRBP1_RAT (P56720) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) (Adipocyte determination- and differentiation-dependent factor 1) (ADD1) (Fragment) Length = 1024 Score = 30.0 bits (66), Expect = 4.3 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +3 Query: 15 LRDLLPTLMQKRDKATFLLEVIEYIRFLQEKAQK 116 L+DL+ K +K+ L + I+YIRFLQ QK Sbjct: 316 LKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 349
>GLNE_RALSO (Q8XW19) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 955 Score = 29.6 bits (65), Expect = 5.6 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = -3 Query: 229 SGICPLLCAFFQDDRKYMFDHGSNFAFSWFHSGNEASYFCA 107 +G L+ F+ R+Y G N A+ W H + FCA Sbjct: 756 NGAAGLMVTHFEAFRRYQMREGDNAAWVWEHQALTRARFCA 796
>MTA2_MOUSE (Q9R190) Metastasis-associated protein MTA2 (Metastasis-associated| 1-like 1) Length = 668 Score = 29.6 bits (65), Expect = 5.6 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 21/87 (24%) Frame = +3 Query: 99 QEKAQKYEASFPEWNQENAKLLPWSNM----YFRSSWKN--------------AQSKGQ- 221 +E +KY F + Q+ LPW ++ F WK A SK + Sbjct: 277 EEALEKYGKDFNDIRQD---FLPWKSLASIVQFYYMWKTTDRYIQQKRLKAAEADSKLKQ 333 Query: 222 --IPEDASPDPSQFIRNGASPGFNITG 296 IP P+P+Q I G+ PG N G Sbjct: 334 VYIPTYTKPNPNQIISVGSKPGMNGAG 360
>MTA2_HUMAN (O94776) Metastasis-associated protein MTA2 (Metastasis-associated| 1-like 1) (MTA1-L1 protein) (p53 target protein in deacetylase complex) Length = 668 Score = 29.6 bits (65), Expect = 5.6 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 21/87 (24%) Frame = +3 Query: 99 QEKAQKYEASFPEWNQENAKLLPWSNM----YFRSSWKN--------------AQSKGQ- 221 +E +KY F + Q+ LPW ++ F WK A SK + Sbjct: 277 EEALEKYGKDFNDIRQD---FLPWKSLASIVQFYYMWKTTDRYIQQKRLKAAEADSKLKQ 333 Query: 222 --IPEDASPDPSQFIRNGASPGFNITG 296 IP P+P+Q I G+ PG N G Sbjct: 334 VYIPTYTKPNPNQIISVGSKPGMNGAG 360
>MUTS_STAHJ (Q4L5Z9) DNA mismatch repair protein mutS| Length = 883 Score = 29.6 bits (65), Expect = 5.6 Identities = 33/134 (24%), Positives = 51/134 (38%) Frame = +3 Query: 6 FQLLRDLLPTLMQKRDKATFLLEVIEYIRFLQEKAQKYEASFPEWNQENAKLLPWSNMYF 185 F LR+ + T ++ K ++ ++ ++ E AQKY PE++ K L N Sbjct: 515 FVRLREHIKTYTERLQKQAKIISELDCLQSFAEIAQKYNYVKPEFSDN--KTLSLENSRH 572 Query: 186 RSSWKNAQSKGQIPEDASPDPSQFIRNGASPGFNITGKLDDNHTAVASAAISGAQDQAET 365 + +P D D FI P N++GK T + AI Q Sbjct: 573 PVVERVMDYNDYVPNDCKLDKDNFIYLITGP--NMSGK----STYMRQVAIISIMAQMG- 625 Query: 366 DHMASVSCRSADTP 407 A V C A+ P Sbjct: 626 ---AYVPCNKAELP 636
>Y420_METJA (Q57863) Hypothetical protein MJ0420| Length = 380 Score = 29.3 bits (64), Expect = 7.3 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%) Frame = -1 Query: 222 FALYSVHFSKMIENTCLTMG-VTL-----HFLGSILEMKPRTSVLSLAKTVYI 82 F LY + SK++E+ LT+G +TL HF+G +L P +L T+Y+ Sbjct: 257 FDLYVL--SKIVESNILTLGKITLTPNGEHFIGELLFKYPHNITTTLFGTIYL 307
>LRP2_HUMAN (P98164) Low-density lipoprotein receptor-related protein 2 precursor| (Megalin) (Glycoprotein 330) (gp330) Length = 4655 Score = 28.9 bits (63), Expect = 9.5 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = +3 Query: 444 PQWADPSGVDDCAXNSD 494 P+WA +GVDDC NSD Sbjct: 3694 PKWAVCNGVDDCRDNSD 3710 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,804,312 Number of Sequences: 219361 Number of extensions: 2079384 Number of successful extensions: 6101 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5903 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6099 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
