| Clone Name | bags37b01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070P13, full insert sequence Length = 3359 Score = 214 bits (108), Expect = 2e-52 Identities = 258/308 (83%) Strand = Plus / Plus Query: 42 caaaagagagacaaggcaacatttctcttagaggttattgaatatatacggtttttgcaa 101 |||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||| Sbjct: 2236 caaaagagagacaaagcaacatttctgttagaggttattgaatacatacgctttttgcaa 2295 Query: 102 gagaaagcacagaagtacgaggcttcatttccagaatggaaccaagaaaatgcaaagtta 161 ||||||| ||||||| || |||||| | || |||||||||||||||||||||||| || Sbjct: 2296 gagaaagtgcagaagtttgaagcttcagtccctgaatggaaccaagaaaatgcaaagata 2355 Query: 162 ctcccatggtcaaacatgtattttcgatcatcttggaaaaatgcacagagtaaagggcaa 221 || |||||||||||||| |||||| |||| | ||||||||| |||| |||||||| || Sbjct: 2356 cttccatggtcaaacatatattttagatcgttctggaaaaattcacaaagtaaaggtcag 2415 Query: 222 atcccagaagatgcctcgcctgacccttcacaattcatcagaaatggggcctcccctgga 281 | ||| | ||||| | |||||| |||||||| |||||| | |||||| |||| |||| Sbjct: 2416 aaccctggagatgatttgcctgatccttcacagttcatccggaatgggtcctcttctggg 2475 Query: 282 ttcaatatcacaggcaaacttgatgataaccacaccgcggtagcatctgcagctatctca 341 | ||| |||| ||||||| |||||||||||||| | ||| |||| |||||| |||| Sbjct: 2476 tataatttcactggcaaacctgatgataaccacaacatggtgacatcagcagctgcctca 2535 Query: 342 ggggcaca 349 |||||||| Sbjct: 2536 ggggcaca 2543 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 496 tgttaaataaccaacaattgatgattgatgaaggaacaat 535 |||||||||||||||| ||| ||||||||||||||||| Sbjct: 2690 tgttaaataaccaacagttggcaattgatgaaggaacaat 2729
>dbj|AK071315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084K14, full insert sequence Length = 2173 Score = 214 bits (108), Expect = 2e-52 Identities = 258/308 (83%) Strand = Plus / Plus Query: 42 caaaagagagacaaggcaacatttctcttagaggttattgaatatatacggtttttgcaa 101 |||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||| Sbjct: 969 caaaagagagacaaagcaacatttctgttagaggttattgaatacatacgctttttgcaa 1028 Query: 102 gagaaagcacagaagtacgaggcttcatttccagaatggaaccaagaaaatgcaaagtta 161 ||||||| ||||||| || |||||| | || |||||||||||||||||||||||| || Sbjct: 1029 gagaaagtgcagaagtttgaagcttcagtccctgaatggaaccaagaaaatgcaaagata 1088 Query: 162 ctcccatggtcaaacatgtattttcgatcatcttggaaaaatgcacagagtaaagggcaa 221 || |||||||||||||| |||||| |||| | ||||||||| |||| |||||||| || Sbjct: 1089 cttccatggtcaaacatatattttagatcgttctggaaaaattcacaaagtaaaggtcag 1148 Query: 222 atcccagaagatgcctcgcctgacccttcacaattcatcagaaatggggcctcccctgga 281 | ||| | ||||| | |||||| |||||||| |||||| | |||||| |||| |||| Sbjct: 1149 aaccctggagatgatttgcctgatccttcacagttcatccggaatgggtcctcttctggg 1208 Query: 282 ttcaatatcacaggcaaacttgatgataaccacaccgcggtagcatctgcagctatctca 341 | ||| |||| ||||||| |||||||||||||| | ||| |||| |||||| |||| Sbjct: 1209 tataatttcactggcaaacctgatgataaccacaacatggtgacatcagcagctgcctca 1268 Query: 342 ggggcaca 349 |||||||| Sbjct: 1269 ggggcaca 1276 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 496 tgttaaataaccaacaattgatgattgatgaaggaacaat 535 |||||||||||||||| ||| ||||||||||||||||| Sbjct: 1423 tgttaaataaccaacagttggcaattgatgaaggaacaat 1462
>ref|XM_483085.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1983 Score = 153 bits (77), Expect = 7e-34 Identities = 146/169 (86%) Strand = Plus / Plus Query: 42 caaaagagagacaaggcaacatttctcttagaggttattgaatatatacggtttttgcaa 101 |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 913 caaaagagagacaaagcatcatttctcttagaggttattgaatacatacggtttttacaa 972 Query: 102 gagaaagcacagaagtacgaggcttcatttccagaatggaaccaagaaaatgcaaagtta 161 ||||||| ||| ||||| |||| ||||| || || ||||||||||||||||||||| | Sbjct: 973 gagaaagtacaaaagtatgaggtttcatacccggagtggaaccaagaaaatgcaaaggtt 1032 Query: 162 ctcccatggtcaaacatgtattttcgatcatcttggaaaaatgcacaga 210 | |||||| ||||||| ||||| || || || ||||||||||| |||| Sbjct: 1033 gtgccatggacaaacatctatttccgttcttcctggaaaaatgcgcaga 1081 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 339 tcaggggcacaggatcaggcagaaac 364 ||||| |||||||||||||||||||| Sbjct: 1207 tcaggtgcacaggatcaggcagaaac 1232
>dbj|AK100183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030J22, full insert sequence Length = 1982 Score = 153 bits (77), Expect = 7e-34 Identities = 146/169 (86%) Strand = Plus / Plus Query: 42 caaaagagagacaaggcaacatttctcttagaggttattgaatatatacggtttttgcaa 101 |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 912 caaaagagagacaaagcatcatttctcttagaggttattgaatacatacggtttttacaa 971 Query: 102 gagaaagcacagaagtacgaggcttcatttccagaatggaaccaagaaaatgcaaagtta 161 ||||||| ||| ||||| |||| ||||| || || ||||||||||||||||||||| | Sbjct: 972 gagaaagtacaaaagtatgaggtttcatacccggagtggaaccaagaaaatgcaaaggtt 1031 Query: 162 ctcccatggtcaaacatgtattttcgatcatcttggaaaaatgcacaga 210 | |||||| ||||||| ||||| || || || ||||||||||| |||| Sbjct: 1032 gtgccatggacaaacatctatttccgttcttcctggaaaaatgcgcaga 1080 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 339 tcaggggcacaggatcaggcagaaac 364 ||||| |||||||||||||||||||| Sbjct: 1206 tcaggtgcacaggatcaggcagaaac 1231
>dbj|AK070237.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047A01, full insert sequence Length = 1733 Score = 153 bits (77), Expect = 7e-34 Identities = 146/169 (86%) Strand = Plus / Plus Query: 42 caaaagagagacaaggcaacatttctcttagaggttattgaatatatacggtttttgcaa 101 |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 650 caaaagagagacaaagcatcatttctcttagaggttattgaatacatacggtttttacaa 709 Query: 102 gagaaagcacagaagtacgaggcttcatttccagaatggaaccaagaaaatgcaaagtta 161 ||||||| ||| ||||| |||| ||||| || || ||||||||||||||||||||| | Sbjct: 710 gagaaagtacaaaagtatgaggtttcatacccggagtggaaccaagaaaatgcaaaggtt 769 Query: 162 ctcccatggtcaaacatgtattttcgatcatcttggaaaaatgcacaga 210 | |||||| ||||||| ||||| || || || ||||||||||| |||| Sbjct: 770 gtgccatggacaaacatctatttccgttcttcctggaaaaatgcgcaga 818 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 339 tcaggggcacaggatcaggcagaaac 364 ||||| |||||||||||||||||||| Sbjct: 944 tcaggtgcacaggatcaggcagaaac 969
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 105 bits (53), Expect = 1e-19 Identities = 113/133 (84%) Strand = Plus / Plus Query: 73 aggttattgaatatatacggtttttgcaagagaaagcacagaagtacgaggcttcatttc 132 ||||||||||||| ||||||||||| |||||||||| ||| ||||| |||| ||||| | Sbjct: 24219764 aggttattgaatacatacggtttttacaagagaaagtacaaaagtatgaggtttcatacc 24219823 Query: 133 cagaatggaaccaagaaaatgcaaagttactcccatggtcaaacatgtattttcgatcat 192 | || ||||||||||||||||||||| | | |||||| ||||||| ||||| || || | Sbjct: 24219824 cggagtggaaccaagaaaatgcaaaggttgtgccatggacaaacatctatttccgttctt 24219883 Query: 193 cttggaaaaatgc 205 | ||||||||||| Sbjct: 24219884 cctggaaaaatgc 24219896 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 42 caaaagagagacaaggcaacatttctcttagaggt 76 |||||||||||||| ||| |||||||||||||||| Sbjct: 24219647 caaaagagagacaaagcatcatttctcttagaggt 24219681 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 339 tcaggggcacaggatcaggcagaaac 364 ||||| |||||||||||||||||||| Sbjct: 24220122 tcaggtgcacaggatcaggcagaaac 24220147
>dbj|AP004620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0605H02 Length = 175547 Score = 105 bits (53), Expect = 1e-19 Identities = 113/133 (84%) Strand = Plus / Plus Query: 73 aggttattgaatatatacggtttttgcaagagaaagcacagaagtacgaggcttcatttc 132 ||||||||||||| ||||||||||| |||||||||| ||| ||||| |||| ||||| | Sbjct: 86103 aggttattgaatacatacggtttttacaagagaaagtacaaaagtatgaggtttcatacc 86162 Query: 133 cagaatggaaccaagaaaatgcaaagttactcccatggtcaaacatgtattttcgatcat 192 | || ||||||||||||||||||||| | | |||||| ||||||| ||||| || || | Sbjct: 86163 cggagtggaaccaagaaaatgcaaaggttgtgccatggacaaacatctatttccgttctt 86222 Query: 193 cttggaaaaatgc 205 | ||||||||||| Sbjct: 86223 cctggaaaaatgc 86235 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 42 caaaagagagacaaggcaacatttctcttagaggt 76 |||||||||||||| ||| |||||||||||||||| Sbjct: 85986 caaaagagagacaaagcatcatttctcttagaggt 86020 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 339 tcaggggcacaggatcaggcagaaac 364 ||||| |||||||||||||||||||| Sbjct: 86461 tcaggtgcacaggatcaggcagaaac 86486
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 99.6 bits (50), Expect = 9e-18 Identities = 86/98 (87%) Strand = Plus / Plus Query: 73 aggttattgaatatatacggtttttgcaagagaaagcacagaagtacgaggcttcatttc 132 ||||||||||||| ||||| |||||||||||||||| ||||||| || |||||| | | Sbjct: 18158378 aggttattgaatacatacgctttttgcaagagaaagtgcagaagtttgaagcttcagtcc 18158437 Query: 133 cagaatggaaccaagaaaatgcaaagttactcccatgg 170 | |||||||||||||||||||||||| |||| |||||| Sbjct: 18158438 ctgaatggaaccaagaaaatgcaaagatacttccatgg 18158475 Score = 54.0 bits (27), Expect = 5e-04 Identities = 114/143 (79%) Strand = Plus / Plus Query: 207 cagagtaaagggcaaatcccagaagatgcctcgcctgacccttcacaattcatcagaaat 266 ||||||||||| || | ||| | ||||| | |||||| |||||||| |||||| | ||| Sbjct: 18158711 cagagtaaaggtcagaaccctggagatgatttgcctgatccttcacagttcatccggaat 18158770 Query: 267 ggggcctcccctggattcaatatcacaggcaaacttgatgataaccacaccgcggtagca 326 ||| |||| |||| | ||| |||| ||||||| |||||||||||||| | ||| || Sbjct: 18158771 gggtcctcttctgggtataatttcactggcaaacctgatgataaccacaacatggtgaca 18158830 Query: 327 tctgcagctatctcaggggcaca 349 || |||||| |||||||||||| Sbjct: 18158831 tcagcagctgcctcaggggcaca 18158853 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 42 caaaagagagacaaggcaacatttctcttagaggt 76 |||||||||||||| ||||||||||| |||||||| Sbjct: 18158259 caaaagagagacaaagcaacatttctgttagaggt 18158293 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 496 tgttaaataaccaacaattgatgattgatgaaggaacaat 535 |||||||||||||||| ||| ||||||||||||||||| Sbjct: 18159112 tgttaaataaccaacagttggcaattgatgaaggaacaat 18159151 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 160 tactcccatggtcaaacatgta 181 |||||||||||||||||||||| Sbjct: 9956818 tactcccatggtcaaacatgta 9956839
>dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0026C08 Length = 155316 Score = 99.6 bits (50), Expect = 9e-18 Identities = 86/98 (87%) Strand = Plus / Plus Query: 73 aggttattgaatatatacggtttttgcaagagaaagcacagaagtacgaggcttcatttc 132 ||||||||||||| ||||| |||||||||||||||| ||||||| || |||||| | | Sbjct: 151500 aggttattgaatacatacgctttttgcaagagaaagtgcagaagtttgaagcttcagtcc 151559 Query: 133 cagaatggaaccaagaaaatgcaaagttactcccatgg 170 | |||||||||||||||||||||||| |||| |||||| Sbjct: 151560 ctgaatggaaccaagaaaatgcaaagatacttccatgg 151597 Score = 54.0 bits (27), Expect = 5e-04 Identities = 114/143 (79%) Strand = Plus / Plus Query: 207 cagagtaaagggcaaatcccagaagatgcctcgcctgacccttcacaattcatcagaaat 266 ||||||||||| || | ||| | ||||| | |||||| |||||||| |||||| | ||| Sbjct: 151833 cagagtaaaggtcagaaccctggagatgatttgcctgatccttcacagttcatccggaat 151892 Query: 267 ggggcctcccctggattcaatatcacaggcaaacttgatgataaccacaccgcggtagca 326 ||| |||| |||| | ||| |||| ||||||| |||||||||||||| | ||| || Sbjct: 151893 gggtcctcttctgggtataatttcactggcaaacctgatgataaccacaacatggtgaca 151952 Query: 327 tctgcagctatctcaggggcaca 349 || |||||| |||||||||||| Sbjct: 151953 tcagcagctgcctcaggggcaca 151975 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 42 caaaagagagacaaggcaacatttctcttagaggt 76 |||||||||||||| ||||||||||| |||||||| Sbjct: 151381 caaaagagagacaaagcaacatttctgttagaggt 151415 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 496 tgttaaataaccaacaattgatgattgatgaaggaacaat 535 |||||||||||||||| ||| ||||||||||||||||| Sbjct: 152234 tgttaaataaccaacagttggcaattgatgaaggaacaat 152273
>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556A05 Length = 158189 Score = 99.6 bits (50), Expect = 9e-18 Identities = 86/98 (87%) Strand = Plus / Plus Query: 73 aggttattgaatatatacggtttttgcaagagaaagcacagaagtacgaggcttcatttc 132 ||||||||||||| ||||| |||||||||||||||| ||||||| || |||||| | | Sbjct: 7102 aggttattgaatacatacgctttttgcaagagaaagtgcagaagtttgaagcttcagtcc 7161 Query: 133 cagaatggaaccaagaaaatgcaaagttactcccatgg 170 | |||||||||||||||||||||||| |||| |||||| Sbjct: 7162 ctgaatggaaccaagaaaatgcaaagatacttccatgg 7199 Score = 54.0 bits (27), Expect = 5e-04 Identities = 114/143 (79%) Strand = Plus / Plus Query: 207 cagagtaaagggcaaatcccagaagatgcctcgcctgacccttcacaattcatcagaaat 266 ||||||||||| || | ||| | ||||| | |||||| |||||||| |||||| | ||| Sbjct: 7435 cagagtaaaggtcagaaccctggagatgatttgcctgatccttcacagttcatccggaat 7494 Query: 267 ggggcctcccctggattcaatatcacaggcaaacttgatgataaccacaccgcggtagca 326 ||| |||| |||| | ||| |||| ||||||| |||||||||||||| | ||| || Sbjct: 7495 gggtcctcttctgggtataatttcactggcaaacctgatgataaccacaacatggtgaca 7554 Query: 327 tctgcagctatctcaggggcaca 349 || |||||| |||||||||||| Sbjct: 7555 tcagcagctgcctcaggggcaca 7577 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 42 caaaagagagacaaggcaacatttctcttagaggt 76 |||||||||||||| ||||||||||| |||||||| Sbjct: 6983 caaaagagagacaaagcaacatttctgttagaggt 7017 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 496 tgttaaataaccaacaattgatgattgatgaaggaacaat 535 |||||||||||||||| ||| ||||||||||||||||| Sbjct: 7836 tgttaaataaccaacagttggcaattgatgaaggaacaat 7875
>ref|XM_467577.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1312 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 72 gaggttattgaatatatacggtttttgcaagagaaag 108 |||||||||||||| ||| |||||||||||||||||| Sbjct: 560 gaggttattgaatacataaggtttttgcaagagaaag 596
>dbj|AK068228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013148L19, full insert sequence Length = 1313 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 72 gaggttattgaatatatacggtttttgcaagagaaag 108 |||||||||||||| ||| |||||||||||||||||| Sbjct: 561 gaggttattgaatacataaggtttttgcaagagaaag 597
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 73 aggttattgaatatatacggtttttgcaagagaaag 108 ||||||||||||| ||| |||||||||||||||||| Sbjct: 30252801 aggttattgaatacataaggtttttgcaagagaaag 30252766
>dbj|AP005284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1121A12 Length = 138796 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 73 aggttattgaatatatacggtttttgcaagagaaag 108 ||||||||||||| ||| |||||||||||||||||| Sbjct: 53718 aggttattgaatacataaggtttttgcaagagaaag 53683
>gb|AC147184.3| Mus musculus BAC clone RP24-286F20 from 1, complete sequence Length = 176857 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 94 ttttgcaagagaaagcacagaagt 117 |||||||||||||||||||||||| Sbjct: 84076 ttttgcaagagaaagcacagaagt 84099
>dbj|AP005724.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0017I18 Length = 146304 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 160 tactcccatggtcaaacatgta 181 |||||||||||||||||||||| Sbjct: 112265 tactcccatggtcaaacatgta 112286
>gb|AC102922.9| Mus musculus chromosome 1, clone RP24-262J8, complete sequence Length = 178026 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 ggtttttgcaagagaaagcacagaa 115 ||||| ||||||||||||||||||| Sbjct: 99730 ggtttatgcaagagaaagcacagaa 99706
>gb|AY013827.1| Synthetic construct isolate GFPxm19 mutant green fluorescent protein (GFPxm) gene, complete cds Length = 717 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 tgtattttcgatcatcttggaaaaa 202 ||||||||| ||||||||||||||| Sbjct: 319 tgtattttccatcatcttggaaaaa 295
>gb|AY013826.1| Synthetic construct isolate GFPxm18 mutant green fluorescent protein (GFPxm) gene, complete cds Length = 717 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 tgtattttcgatcatcttggaaaaa 202 ||||||||| ||||||||||||||| Sbjct: 319 tgtattttccatcatcttggaaaaa 295
>gb|AY013825.1| Synthetic construct isolate GFPxm16 mutant green fluorescent protein (GFPxm) gene, complete cds Length = 717 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 tgtattttcgatcatcttggaaaaa 202 ||||||||| ||||||||||||||| Sbjct: 319 tgtattttccatcatcttggaaaaa 295
>gb|AY013824.1| Aequorea macrodactyla isolate GFPxm green fluorescent protein (GFPxm) mRNA, complete cds Length = 717 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 tgtattttcgatcatcttggaaaaa 202 ||||||||| ||||||||||||||| Sbjct: 319 tgtattttccatcatcttggaaaaa 295
>gb|AY013821.1| Aequorea macrodactyla isolate GFPdnaxm green fluorescent protein gene, complete cds Length = 1047 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 tgtattttcgatcatcttggaaaaa 202 ||||||||| ||||||||||||||| Sbjct: 506 tgtattttccatcatcttggaaaaa 482
>gb|AF435433.1|AF435433 Aequorea macrodactyla isolate ShG24 green fluorescent protein (GFP) gene, complete cds Length = 717 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 tgtattttcgatcatcttggaaaaa 202 ||||||||| ||||||||||||||| Sbjct: 319 tgtattttccatcatcttggaaaaa 295
>gb|AF435432.1|AF435432 Aequorea macrodactyla isolate OFPxm orange fluorescent protein (GFP) gene, complete cds Length = 717 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 tgtattttcgatcatcttggaaaaa 202 ||||||||| ||||||||||||||| Sbjct: 319 tgtattttccatcatcttggaaaaa 295
>gb|AF435431.1|AF435431 Aequorea macrodactyla isolate GFPxm19uv green fluorescent protein (GFP) gene, complete cds Length = 717 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 tgtattttcgatcatcttggaaaaa 202 ||||||||| ||||||||||||||| Sbjct: 319 tgtattttccatcatcttggaaaaa 295
>gb|AF435430.1|AF435430 Aequorea macrodactyla isolate GFPxm191uv green fluorescent protein (GFP) gene, complete cds Length = 717 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 tgtattttcgatcatcttggaaaaa 202 ||||||||| ||||||||||||||| Sbjct: 319 tgtattttccatcatcttggaaaaa 295
>gb|AF435429.1|AF435429 Aequorea macrodactyla isolate GFPxm163 green fluorescent protein (GFP) gene, complete cds Length = 717 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 tgtattttcgatcatcttggaaaaa 202 ||||||||| ||||||||||||||| Sbjct: 319 tgtattttccatcatcttggaaaaa 295
>gb|AF435428.1|AF435428 Aequorea macrodactyla isolate GFPxm162 green fluorescent protein (GFP) gene, complete cds Length = 717 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 tgtattttcgatcatcttggaaaaa 202 ||||||||| ||||||||||||||| Sbjct: 319 tgtattttccatcatcttggaaaaa 295
>gb|AF435427.1|AF435427 Aequorea macrodactyla isolate GFPxm161 green fluorescent protein (GFP) gene, complete cds Length = 717 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 tgtattttcgatcatcttggaaaaa 202 ||||||||| ||||||||||||||| Sbjct: 319 tgtattttccatcatcttggaaaaa 295
>gb|AC010727.6|AC010727 Homo sapiens BAC clone RP11-224E16 from 3, complete sequence Length = 148061 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 aatggaaccaagaaaatgcaa 156 ||||||||||||||||||||| Sbjct: 18442 aatggaaccaagaaaatgcaa 18462
>emb|AL115678.1|CNS01CLI Botrytis cinerea strain T4 cDNA library Length = 780 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 498 ttaaataaccaacaattgatg 518 ||||||||||||||||||||| Sbjct: 247 ttaaataaccaacaattgatg 267
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 411 aatattttgaataatgtttcg 431 ||||||||||||||||||||| Sbjct: 16728186 aatattttgaataatgtttcg 16728206
>gb|AC154807.2| Mus musculus BAC clone RP23-79E7 from chromosome 16, complete sequence Length = 256130 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 511 aattgatgattgatgaaggaa 531 ||||||||||||||||||||| Sbjct: 198998 aattgatgattgatgaaggaa 198978
>gb|AC154804.2| Mus musculus BAC clone RP24-506H9 from chromosome 16, complete sequence Length = 176299 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 511 aattgatgattgatgaaggaa 531 ||||||||||||||||||||| Sbjct: 529 aattgatgattgatgaaggaa 509
>ref|XM_577459.1| PREDICTED: Rattus norvegicus similar to POU domain, class 5, transcription factor 1-like protein 2 (LOC502028), mRNA Length = 768 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 gcaagagaaagcacagaagta 118 ||||||||||||||||||||| Sbjct: 590 gcaagagaaagcacagaagta 610
>gb|AC090948.2| Homo sapiens chromosome 3 clone RP11-415F23 map 3p, complete sequence Length = 179729 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 aatggaaccaagaaaatgcaa 156 ||||||||||||||||||||| Sbjct: 176801 aatggaaccaagaaaatgcaa 176821
>emb|BX908393.10| Zebrafish DNA sequence from clone CH211-180H19 in linkage group 18, complete sequence Length = 138757 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 409 caaatattttgaataatgttt 429 ||||||||||||||||||||| Sbjct: 120982 caaatattttgaataatgttt 121002
>gb|AF059201.1|AF059201 Oryctolagus cuniculus collagenase-3 precursor, mRNA, complete cds Length = 3124 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 acaggcaaacttgatgataac 311 ||||||||||||||||||||| Sbjct: 904 acaggcaaacttgatgataac 924
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 411 aatattttgaataatgtttcg 431 ||||||||||||||||||||| Sbjct: 16681419 aatattttgaataatgtttcg 16681439
>emb|AL935068.5|CNS08CCK Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0088J13 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 116974 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 411 aatattttgaataatgtttcg 431 ||||||||||||||||||||| Sbjct: 57215 aatattttgaataatgtttcg 57195
>emb|AL935318.6| Zebrafish DNA sequence from clone CH211-251L7 in linkage group 18, complete sequence Length = 176719 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 409 caaatattttgaataatgttt 429 ||||||||||||||||||||| Sbjct: 27 caaatattttgaataatgttt 7
>dbj|AB055060.1| Catharanthus roseus gene for alternative oxidase, complete cds Length = 11471 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 aacaattgatgattgatgaag 528 ||||||||||||||||||||| Sbjct: 11336 aacaattgatgattgatgaag 11356
>ref|NM_102194.1| Arabidopsis thaliana unknown protein AT1G23450 mRNA, complete cds Length = 1986 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 ttgatgattgatgaaggaac 532 |||||||||||||||||||| Sbjct: 1204 ttgatgattgatgaaggaac 1223
>gb|AC113444.9| Mus musculus chromosome 15, clone RP23-268C9, complete sequence Length = 189539 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 200 aaatgcacagagtaaagggcaaat 223 ||||||| |||||||||||||||| Sbjct: 40888 aaatgcaaagagtaaagggcaaat 40911
>gb|AC161821.4| Pan troglodytes BAC clone CH251-507E3 from chromosome 7, complete sequence Length = 211131 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 caaatattttgaataatgtt 428 |||||||||||||||||||| Sbjct: 9252 caaatattttgaataatgtt 9233
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 ccacaatgggcagacccatc 463 |||||||||||||||||||| Sbjct: 757572 ccacaatgggcagacccatc 757553
>gb|AY458638.2| Uncultured bacterium 441 clone EBAC080-L31C11 genomic sequence Length = 19060 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tccagaatggaaccaagaaa 150 |||||||||||||||||||| Sbjct: 1835 tccagaatggaaccaagaaa 1854
>gb|AC146255.2| Pan troglodytes BAC clone RP43-28B2 from 7, complete sequence Length = 163747 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 caaatattttgaataatgtt 428 |||||||||||||||||||| Sbjct: 4992 caaatattttgaataatgtt 4973
>ref|XM_651673.1| Entamoeba histolytica HM-1:IMSS Rho guanine nucleotide exchange factor (8.t00039) partial mRNA Length = 2193 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 caaatattttgaataatgtt 428 |||||||||||||||||||| Sbjct: 1319 caaatattttgaataatgtt 1338
>ref|XM_726034.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03152) partial mRNA Length = 2973 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 aaatattttgaataatgttt 429 |||||||||||||||||||| Sbjct: 507 aaatattttgaataatgttt 488
>gb|AC006155.2| Homo sapiens BAC clone RP11-263N12 from 7, complete sequence Length = 119996 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 caaatattttgaataatgtt 428 |||||||||||||||||||| Sbjct: 69776 caaatattttgaataatgtt 69757
>ref|XM_671715.1| Plasmodium berghei strain ANKA hypothetical protein (PB000466.03.0) partial mRNA Length = 1002 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 acaaatattttgaataatgt 427 |||||||||||||||||||| Sbjct: 685 acaaatattttgaataatgt 666
>gb|BT010272.1| Drosophila melanogaster RE13447 full insert cDNA Length = 3361 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 aaaagagagacaaggcaacatttc 66 |||||||||||||| ||||||||| Sbjct: 2192 aaaagagagacaagacaacatttc 2169
>emb|CR536602.5| Zebrafish DNA sequence from clone bGZ-160O4, complete sequence Length = 85135 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 ttaaataaccaacaattgatgatt 521 |||||||||||||| ||||||||| Sbjct: 50673 ttaaataaccaacagttgatgatt 50696
>gb|AC113250.3| Drosophila melanogaster 3L BAC RP98-6P13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 168299 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 aaaagagagacaaggcaacatttc 66 |||||||||||||| ||||||||| Sbjct: 68409 aaaagagagacaagacaacatttc 68386
>gb|AC149292.15| Sus scrofa clone ch242-69g11, complete sequence Length = 215342 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 gacccatctggggtggatga 475 |||||||||||||||||||| Sbjct: 142933 gacccatctggggtggatga 142952
>gb|AC104814.5| Homo sapiens BAC clone RP11-683C4 from 4, complete sequence Length = 182155 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 404 tccaacaaatattttgaataatgt 427 ||||||||| |||||||||||||| Sbjct: 175236 tccaacaaaaattttgaataatgt 175213
>ref|NM_080250.2| Drosophila melanogaster diablo CG6224-RA (dbo), mRNA Length = 3658 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 aaaagagagacaaggcaacatttc 66 |||||||||||||| ||||||||| Sbjct: 2204 aaaagagagacaagacaacatttc 2181
>gb|AC007945.3|AC007945 Genomic sequence for Arabidopsis thaliana BAC F28C11 from chromosome I, complete sequence Length = 80472 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 ttgatgattgatgaaggaac 532 |||||||||||||||||||| Sbjct: 29807 ttgatgattgatgaaggaac 29826
>emb|AL928714.15| Zebrafish DNA sequence from clone CH211-46G6 in linkage group 10, complete sequence Length = 170509 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 aaatattttgaataatgttt 429 |||||||||||||||||||| Sbjct: 2849 aaatattttgaataatgttt 2868
>gb|AF237711.1|AF237711 Drosophila melanogaster Diablo (dbo) mRNA, complete cds Length = 2459 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 aaaagagagacaaggcaacatttc 66 |||||||||||||| ||||||||| Sbjct: 2150 aaaagagagacaagacaacatttc 2127
>dbj|AB011485.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXH1 Length = 87210 Score = 40.1 bits (20), Expect = 7.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 501 aataaccaacaattgatgattgatgaaggaacaatc 536 |||||||| ||||| |||||| || ||||||||||| Sbjct: 13423 aataaccaccaattcatgattaataaaggaacaatc 13458
>dbj|AB027612.1| Drosophila melanogaster mRNA for kelch-like protein, complete cds Length = 2644 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 aaaagagagacaaggcaacatttc 66 |||||||||||||| ||||||||| Sbjct: 2190 aaaagagagacaagacaacatttc 2167
>emb|BX321877.7| Zebrafish DNA sequence from clone DKEYP-27B10 in linkage group 18, complete sequence Length = 127643 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 gaaccaagaaaatgcaaagt 159 |||||||||||||||||||| Sbjct: 108318 gaaccaagaaaatgcaaagt 108299
>gb|AC147533.3| Macropus eugenii clone ME_KBa-311C4, complete sequence Length = 153357 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 ccacaatgggcagacccatc 463 |||||||||||||||||||| Sbjct: 60578 ccacaatgggcagacccatc 60559
>gb|AE003529.3| Drosophila melanogaster chromosome 3L, section 56 of 83 of the complete sequence Length = 252201 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 aaaagagagacaaggcaacatttc 66 |||||||||||||| ||||||||| Sbjct: 62247 aaaagagagacaagacaacatttc 62224
>gb|AC005990.1|F5O8 Arabidopsis thaliana chromosome 1 BAC F5O8 sequence, complete sequence Length = 99923 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 ttgatgattgatgaaggaac 532 |||||||||||||||||||| Sbjct: 116 ttgatgattgatgaaggaac 135
>emb|CR847901.7| Zebrafish DNA sequence from clone DKEY-215L17 in linkage group 10, complete sequence Length = 106274 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 gacaaggcaacatttctctt 70 |||||||||||||||||||| Sbjct: 23954 gacaaggcaacatttctctt 23935 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,471,172 Number of Sequences: 3902068 Number of extensions: 5471172 Number of successful extensions: 122661 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122276 Number of HSP's gapped (non-prelim): 385 length of query: 537 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 514 effective length of database: 17,143,297,704 effective search space: 8811655019856 effective search space used: 8811655019856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)