ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags36l11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
2dbj|AK064511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 76 2e-10
4emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396... 76 2e-10
5emb|AL844878.4|CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb... 76 2e-10
6gb|AC117205.3| Mus musculus BAC clone RP23-257K20 from 10, compl... 48 0.037
7dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 42 2.3
8gb|AC153003.14| Medicago truncatula clone mth2-96o5, complete se... 40 9.1
9gb|AC122730.27| Medicago truncatula clone mth2-36p5, complete se... 40 9.1
10gb|AC104864.6| Homo sapiens chromosome 8, clone RP11-324E17, com... 40 9.1
11gb|AC103794.2| Homo sapiens chromosome 11, clone CTD-3096P4, com... 40 9.1
12gb|AC025623.8| Homo sapiens chromosome 11, clone RP11-417O17, co... 40 9.1
13gb|AC073938.11|AC073938 Mus musculus 18 BAC RP23-292H1 (Roswell ... 40 9.1
14gb|AC092135.4| Homo sapiens chromosome 16 clone RP11-274A11, com... 40 9.1
15gb|AC092139.5| Homo sapiens chromosome 16 clone RP11-391L3, comp... 40 9.1
16gb|AC020967.2|AC020967 Mus musculus chromosome 18 clone RP23-161... 40 9.1
17emb|BX957285.9| Zebrafish DNA sequence from clone CH211-160M18 i... 40 9.1
18emb|BX465834.20| Zebrafish DNA sequence from clone CH211-202E12 ... 40 9.1
19dbj|AP000860.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 9.1 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 143/178 (80%)
 Strand = Plus / Plus

                                                                            
Query: 450      atcaggaggttctcaatgtcaatgatgataagctgcaagaactgaagaaggaatggggag 509
                |||||||| || | |||||  ||||||| ||||||||||| || |||| ||| |  ||||
Sbjct: 23632502 atcaggagattgtgaatgttgatgatgaaaagctgcaagagcttaagagggactatggag 23632561

                                                                            
Query: 510      aaggcccccacaaagctgtcgtcgatgcgctgatggagatgaaagagtacaactgcctag 569
                ||||  | ||||| |||||| |  |||| || ||||||||||||||||| ||   |||||
Sbjct: 23632562 aaggtgctcacaaggctgtcatgaatgcactaatggagatgaaagagtataatgtcctag 23632621

                                                                          
Query: 570      gcgacaggagcatcgtctatgagctatggaactacaatgagggcaggaaagccaccct 627
                  ||||| |||||||  |||||||| ||||||||||| || || ||||| ||||||||
Sbjct: 23632622 ctgacagaagcatcgcgtatgagctgtggaactacaaggatgggaggaaggccaccct 23632679



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 410      agctggaatcccttcaacacgatcacggttga 441
                ||||||||||||||||| || ||||| |||||
Sbjct: 23632363 agctggaatcccttcaagacaatcacagttga 23632394
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>dbj|AK064511.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-111-E08, full
            insert sequence
          Length = 1528

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 173/218 (79%)
 Strand = Plus / Plus

                                                                        
Query: 410  agctggaatcccttcaacacgatcacggttgagggcaatcatcaggaggttctcaatgtc 469
            ||||||||||||||||| || ||||| ||||| || ||   | ||||| || | ||||| 
Sbjct: 935  agctggaatcccttcaagacaatcacagttgatggtaacggtaaggagattgtgaatgtt 994

                                                                        
Query: 470  aatgatgataagctgcaagaactgaagaaggaatggggagaaggcccccacaaagctgtc 529
             ||||||| ||||||||||| || |||| ||| |  ||||||||  | ||||| ||||||
Sbjct: 995  gatgatgaaaagctgcaagagcttaagagggactatggagaaggtgctcacaaggctgtc 1054

                                                                        
Query: 530  gtcgatgcgctgatggagatgaaagagtacaactgcctaggcgacaggagcatcgtctat 589
             |  |||| || |||||||||||||| || ||   |||||  ||||| |||||||  |||
Sbjct: 1055 atgaatgcactaatggagatgaaagaatataatgtcctagctgacagaagcatcgcgtat 1114

                                                  
Query: 590  gagctatggaactacaatgagggcaggaaagccaccct 627
            ||||| ||||||||||| || || ||||| ||||||||
Sbjct: 1115 gagctgtggaactacaaggatgggaggaaggccaccct 1152
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 143/178 (80%)
 Strand = Plus / Plus

                                                                            
Query: 450      atcaggaggttctcaatgtcaatgatgataagctgcaagaactgaagaaggaatggggag 509
                |||||||| || | |||||  ||||||| ||||||||||| || |||| ||| |  ||||
Sbjct: 23560693 atcaggagattgtgaatgttgatgatgaaaagctgcaagagcttaagagggactatggag 23560752

                                                                            
Query: 510      aaggcccccacaaagctgtcgtcgatgcgctgatggagatgaaagagtacaactgcctag 569
                ||||  | ||||| |||||| |  |||| || ||||||||||||||||| ||   |||||
Sbjct: 23560753 aaggtgctcacaaggctgtcatgaatgcactaatggagatgaaagagtataatgtcctag 23560812

                                                                          
Query: 570      gcgacaggagcatcgtctatgagctatggaactacaatgagggcaggaaagccaccct 627
                  ||||| |||||||  |||||||| ||||||||||| || || ||||| ||||||||
Sbjct: 23560813 ctgacagaagcatcgcgtatgagctgtggaactacaaggatgggaggaaggccaccct 23560870



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 410      agctggaatcccttcaacacgatcacggttga 441
                ||||||||||||||||| || ||||| |||||
Sbjct: 23560554 agctggaatcccttcaagacaatcacagttga 23560585
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>emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 157690

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 143/178 (80%)
 Strand = Plus / Minus

                                                                         
Query: 450   atcaggaggttctcaatgtcaatgatgataagctgcaagaactgaagaaggaatggggag 509
             |||||||| || | |||||  ||||||| ||||||||||| || |||| ||| |  ||||
Sbjct: 73908 atcaggagattgtgaatgttgatgatgaaaagctgcaagagcttaagagggactatggag 73849

                                                                         
Query: 510   aaggcccccacaaagctgtcgtcgatgcgctgatggagatgaaagagtacaactgcctag 569
             ||||  | ||||| |||||| |  |||| || ||||||||||||||||| ||   |||||
Sbjct: 73848 aaggtgctcacaaggctgtcatgaatgcactaatggagatgaaagagtataatgtcctag 73789

                                                                       
Query: 570   gcgacaggagcatcgtctatgagctatggaactacaatgagggcaggaaagccaccct 627
               ||||| |||||||  |||||||| ||||||||||| || || ||||| ||||||||
Sbjct: 73788 ctgacagaagcatcgcgtatgagctgtggaactacaaggatgggaggaaggccaccct 73731



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 410   agctggaatcccttcaacacgatcacggttga 441
             ||||||||||||||||| || ||||| |||||
Sbjct: 74047 agctggaatcccttcaagacaatcacagttga 74016
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>emb|AL844878.4|CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb0036A19 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 128795

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 143/178 (80%)
 Strand = Plus / Minus

                                                                          
Query: 450    atcaggaggttctcaatgtcaatgatgataagctgcaagaactgaagaaggaatggggag 509
              |||||||| || | |||||  ||||||| ||||||||||| || |||| ||| |  ||||
Sbjct: 123120 atcaggagattgtgaatgttgatgatgaaaagctgcaagagcttaagagggactatggag 123061

                                                                          
Query: 510    aaggcccccacaaagctgtcgtcgatgcgctgatggagatgaaagagtacaactgcctag 569
              ||||  | ||||| |||||| |  |||| || ||||||||||||||||| ||   |||||
Sbjct: 123060 aaggtgctcacaaggctgtcatgaatgcactaatggagatgaaagagtataatgtcctag 123001

                                                                        
Query: 570    gcgacaggagcatcgtctatgagctatggaactacaatgagggcaggaaagccaccct 627
                ||||| |||||||  |||||||| ||||||||||| || || ||||| ||||||||
Sbjct: 123000 ctgacagaagcatcgcgtatgagctgtggaactacaaggatgggaggaaggccaccct 122943



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 410    agctggaatcccttcaacacgatcacggttga 441
              ||||||||||||||||| || ||||| |||||
Sbjct: 123259 agctggaatcccttcaagacaatcacagttga 123228
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>gb|AC117205.3| Mus musculus BAC clone RP23-257K20 from 10, complete sequence
          Length = 177430

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 486    aagaactgaagaaggaatggggagaagg 513
              ||||| ||||||||||||||||||||||
Sbjct: 156327 aagaaatgaagaaggaatggggagaagg 156354
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 428    acgatcacggttgagggcaat 448
              |||||||||||||||||||||
Sbjct: 134838 acgatcacggttgagggcaat 134858
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>gb|AC153003.14| Medicago truncatula clone mth2-96o5, complete sequence
          Length = 93881

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 491   ctgaagaaggaatggggaga 510
             ||||||||||||||||||||
Sbjct: 43671 ctgaagaaggaatggggaga 43652
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>gb|AC122730.27| Medicago truncatula clone mth2-36p5, complete sequence
          Length = 127163

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 480   agctgcaagaactgaagaag 499
             ||||||||||||||||||||
Sbjct: 97130 agctgcaagaactgaagaag 97149
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>gb|AC104864.6| Homo sapiens chromosome 8, clone RP11-324E17, complete sequence
          Length = 168786

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 105   gggaaatgatgccgacatggtgga 128
             ||||| ||||||||||||||||||
Sbjct: 52702 gggaagtgatgccgacatggtgga 52679
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>gb|AC103794.2| Homo sapiens chromosome 11, clone CTD-3096P4, complete sequence
          Length = 211445

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   atcaagaaattccttgaaat 251
             ||||||||||||||||||||
Sbjct: 92927 atcaagaaattccttgaaat 92946
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>gb|AC025623.8| Homo sapiens chromosome 11, clone RP11-417O17, complete sequence
          Length = 151329

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   atcaagaaattccttgaaat 251
             ||||||||||||||||||||
Sbjct: 16089 atcaagaaattccttgaaat 16108
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>gb|AC073938.11|AC073938 Mus musculus 18 BAC RP23-292H1 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 205547

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     gaccagtgaggcaactggaa 84
              ||||||||||||||||||||
Sbjct: 143413 gaccagtgaggcaactggaa 143432
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>gb|AC092135.4| Homo sapiens chromosome 16 clone RP11-274A11, complete sequence
          Length = 185193

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     agtgaggcaactggaagtgc 88
              ||||||||||||||||||||
Sbjct: 141282 agtgaggcaactggaagtgc 141301
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>gb|AC092139.5| Homo sapiens chromosome 16 clone RP11-391L3, complete sequence
          Length = 191731

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    agtgaggcaactggaagtgc 88
             ||||||||||||||||||||
Sbjct: 30718 agtgaggcaactggaagtgc 30737
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>gb|AC020967.2|AC020967 Mus musculus chromosome 18 clone RP23-161O8, complete sequence
          Length = 225883

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     gaccagtgaggcaactggaa 84
              ||||||||||||||||||||
Sbjct: 152099 gaccagtgaggcaactggaa 152080
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>emb|BX957285.9| Zebrafish DNA sequence from clone CH211-160M18 in linkage group 10,
             complete sequence
          Length = 156078

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    atgtgcttctgagcttgtcc 43
             ||||||||||||||||||||
Sbjct: 35374 atgtgcttctgagcttgtcc 35355
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>emb|BX465834.20| Zebrafish DNA sequence from clone CH211-202E12 in linkage group 5,
             complete sequence
          Length = 176520

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 479   aagctgcaagaactgaagaa 498
             ||||||||||||||||||||
Sbjct: 11634 aagctgcaagaactgaagaa 11653
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>dbj|AP000860.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-3I4, complete
             sequence
          Length = 103857

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   gaagaaggaatggggagaag 512
             ||||||||||||||||||||
Sbjct: 35160 gaagaaggaatggggagaag 35179


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,382,674
Number of Sequences: 3902068
Number of extensions: 5382674
Number of successful extensions: 96011
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95872
Number of HSP's gapped (non-prelim): 137
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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