ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags37a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYD_MYCLE (P36429) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 31 0.84
2CCNB3_HUMAN (Q8WWL7) G2/mitotic-specific cyclin-B3 31 1.1
3LOX12_PIG (P16469) Arachidonate 12-lipoxygenase, 12S-type (EC 1.... 29 4.2
4LOX12_BOVIN (P27479) Arachidonate 12-lipoxygenase, 12S-type (EC ... 28 5.4
5OR19B_DROME (Q8IRZ5) Putative odorant receptor 19b 28 7.1
6OR19A_DROME (Q9I816) Putative odorant receptor 19a 28 7.1

>SYD_MYCLE (P36429) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS) (Antigen T5)
          Length = 589

 Score = 31.2 bits (69), Expect = 0.84
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 13  PKPEIEESIPTQDASELKIANDASVHGHECHEGETSV 123
           PKPE E+SI +   S L  A D   +GHE   G   +
Sbjct: 454 PKPEFEDSIESDPGSVLADAYDIVCNGHEIGSGSVRI 490



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>CCNB3_HUMAN (Q8WWL7) G2/mitotic-specific cyclin-B3|
          Length = 1395

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 10  KPKPEIEESIPTQDASELKIANDASVHGHECH 105
           K KP+ EESIPT   S LK     +++G  CH
Sbjct: 269 KKKPKTEESIPTHKLSSLK--KKCTIYGKICH 298



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>LOX12_PIG (P16469) Arachidonate 12-lipoxygenase, 12S-type (EC 1.13.11.31)|
           (12-LOX)
          Length = 662

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 115 FRLHGIHAHVLRHHLLSSV 59
           F+LH +H+H+LR HL++ V
Sbjct: 352 FQLHELHSHLLRGHLMAEV 370



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>LOX12_BOVIN (P27479) Arachidonate 12-lipoxygenase, 12S-type (EC 1.13.11.31)|
           (12-LOX)
          Length = 662

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 115 FRLHGIHAHVLRHHLLSSV 59
           F+LH +H+H+LR HL++ V
Sbjct: 352 FQLHELHSHLLRGHLVAEV 370



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>OR19B_DROME (Q8IRZ5) Putative odorant receptor 19b|
          Length = 387

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 100 IHAHVLRHHLLSSVQKHLE*VCFLQFQA*AC 8
           IH H +   L  S+++ L   CFLQF + AC
Sbjct: 238 IHDHQIILRLFKSLERSLSMTCFLQFFSTAC 268



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>OR19A_DROME (Q9I816) Putative odorant receptor 19a|
          Length = 387

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 100 IHAHVLRHHLLSSVQKHLE*VCFLQFQA*AC 8
           IH H +   L  S+++ L   CFLQF + AC
Sbjct: 238 IHDHQIILRLFKSLERSLSMTCFLQFFSTAC 268


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.303    0.124    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,847,392
Number of Sequences: 219361
Number of extensions: 122904
Number of successful extensions: 250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 80,573,946
effective HSP length: 16
effective length of database: 77,064,170
effective search space used: 1849540080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
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