Clone Information

BLAST Search Result

Clone Name	bags36l06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	TOC34_ARATH (Q38906) Translocase of chloroplast 34 (EC 3.6.5.-) ...	186	1e-47
2	TOC34_PEA (Q41009) Translocase of chloroplast 34 (EC 3.6.5.-) (3...	179	1e-45
3	AIG1_ARATH (P54120) Protein AIG1	35	0.055
4	CLPX_ANASP (Q8YQX7) ATP-dependent Clp protease ATP-binding subun...	33	0.12
5	MRAW_BLOFL (Q7VQJ5) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)	32	0.28
6	CLPX_SYNY3 (Q55510) ATP-dependent Clp protease ATP-binding subun...	32	0.36
7	LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1...	32	0.47
8	LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precur...	32	0.47
9	CLPX_LEPIN (Q8F353) ATP-dependent Clp protease ATP-binding subun...	30	1.8
10	CLPX_LEPIC (Q72SG5) ATP-dependent Clp protease ATP-binding subun...	30	1.8
11	MTHR1_YEAST (P46151) Methylenetetrahydrofolate reductase 1 (EC 1...	30	1.8
12	RPOC_BUCBP (Q89B21) DNA-directed RNA polymerase beta' chain (EC ...	29	2.3
13	SCDA_STAES (Q8CQ32) Cell wall-related protein scdA	29	2.3
14	SCDA_STAEQ (Q5HR69) Cell wall-related protein scdA	29	2.3
15	HMDH2_GOSHI (O64967) 3-hydroxy-3-methylglutaryl-coenzyme A reduc...	29	2.3
16	CLPX_PORGI (Q7MX10) ATP-dependent Clp protease ATP-binding subun...	29	3.0
17	VE6_HPV18 (P06463) Protein E6	29	3.0
18	LON2_BORBU (O51558) ATP-dependent protease La homolog (EC 3.4.21.-)	28	4.0
19	HMDH_CAMAC (P48021) 3-hydroxy-3-methylglutaryl-coenzyme A reduct...	28	4.0
20	RPOC_PASMU (Q9CK92) DNA-directed RNA polymerase beta' chain (EC ...	28	4.0
21	RPOC_RHILO (Q98N65) DNA-directed RNA polymerase beta' chain (EC ...	28	4.0
22	WIPI3_MOUSE (Q9CR39) WD-repeat domain phosphoinositide-interacti...	28	4.0
23	LPXK_CAUCR (P58184) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13...	28	4.0
24	KELC_DROME (Q04652) Ring canal kelch protein [Contains: Kelch sh...	28	4.0
25	OR1D5_HUMAN (P58170) Olfactory receptor 1D5 (Olfactory receptor ...	28	5.2
26	NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3...	28	5.2
27	HMDH3_HEVBR (Q00583) 3-hydroxy-3-methylglutaryl-coenzyme A reduc...	28	6.8
28	KCY_MOUSE (Q9DBP5) UMP-CMP kinase (EC 2.7.4.14) (Cytidylate kina...	28	6.8
29	VPS13_YEAST (Q07878) Vacuolar protein sorting-associated protein...	28	6.8
30	NMDE3_HUMAN (Q14957) Glutamate [NMDA] receptor subunit epsilon 3...	28	6.8
31	MTSA_STRSA (P31304) Manganese ABC transporter substrate-binding ...	28	6.8
32	MTSA_STRPA (P31305) Manganese ABC transporter substrate-binding ...	28	6.8
33	RPOC_AGRT5 (Q8UE09) DNA-directed RNA polymerase beta' chain (EC ...	28	6.8
34	RPC6_SCHPO (O94553) Probable DNA-directed RNA polymerase III 34 ...	28	6.8
35	FLGG_BUCBP (Q89AH7) Flagellar basal-body rod protein flgG (Dista...	28	6.8
36	SRY_CALUR (Q6TC43) Sex-determining region Y protein (Testis-dete...	28	6.8
37	SRY_ARCGZ (Q6TC44) Sex-determining region Y protein (Testis-dete...	28	6.8
38	Y191_CLOAB (Q97MK5) Putative HTH-type transcriptional regulator ...	27	8.9
39	UNC5D_HUMAN (Q6UXZ4) Netrin receptor UNC5D precursor (Unc-5 homo...	27	8.9
40	RPOC_SALTY (P0A2R4) DNA-directed RNA polymerase beta' chain (EC ...	27	8.9
41	RPOC_SALTI (P0A2R5) DNA-directed RNA polymerase beta' chain (EC ...	27	8.9
42	RPOC_SALPA (Q5PK92) DNA-directed RNA polymerase beta' chain (EC ...	27	8.9
43	RPOC_SALCH (Q57H68) DNA-directed RNA polymerase beta' chain (EC ...	27	8.9
44	HMDH1_GOSHI (O64966) 3-hydroxy-3-methylglutaryl-coenzyme A reduc...	27	8.9
45	VS48_TBRVC (P22048) Satellite RNA 48 kDa protein	27	8.9
46	RPOC_HAEI8 (Q4QN34) DNA-directed RNA polymerase beta' chain (EC ...	27	8.9
47	MTSA_STRR6 (P0A4G3) Manganese ABC transporter substrate-binding ...	27	8.9
48	MTSA_STRMT (Q9L5X0) Manganese ABC transporter substrate-binding ...	27	8.9
49	MTSA1_STRPN (P0A4G2) Manganese ABC transporter substrate-binding...	27	8.9
50	RPOC_PARUW (Q6MDM0) DNA-directed RNA polymerase beta' chain (EC ...	27	8.9
51	RPOC_HAEIN (P43739) DNA-directed RNA polymerase beta' chain (EC ...	27	8.9

>TOC34_ARATH (Q38906) Translocase of chloroplast 34 (EC 3.6.5.-) (34 kDa|
           chloroplast outer envelope protein) (GTP-binding protein
           OEP34) (AtToc34)
          Length = 313

 Score =  186 bits (472), Expect = 1e-47
 Identities = 85/134 (63%), Positives = 111/134 (82%)
 Frame = +3

Query: 3   TRAGFTLNIIDTPGLIEGGYINEQAVEIIKRFLLEKTIDVLLYVDRLDTYRMDTLDEQVI 182
           TR+GFTLNIIDTPGLIEGGY+N+QA+ IIKRFLL  TIDVLLYVDRLD YR+D LD QV+
Sbjct: 82  TRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVV 141

Query: 183 RAITSSLGKAIWRRTLVVLTHAQLSPPDGIDYNDFLARRSESLVRYIRSGAGIGKREYAD 362
            AIT + GK IW+++ +VLTHAQ SPPDG++YN F+++RS +L++ I++GA + K++   
Sbjct: 142 GAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSNALLKVIQTGAQLKKQDLQG 201

Query: 363 FPLPIALAENSGRC 404
           F +P+ L ENSGRC
Sbjct: 202 FSIPVILVENSGRC 215

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>TOC34_PEA (Q41009) Translocase of chloroplast 34 (EC 3.6.5.-) (34 kDa|
           chloroplast outer envelope protein) (GTP-binding protein
           OEP34) (GTP-binding protein IAP34)
          Length = 310

 Score =  179 bits (454), Expect = 1e-45
 Identities = 86/134 (64%), Positives = 107/134 (79%)
 Frame = +3

Query: 3   TRAGFTLNIIDTPGLIEGGYINEQAVEIIKRFLLEKTIDVLLYVDRLDTYRMDTLDEQVI 182
           +RAGFTLNIIDTPGLIEGGYIN+ A+ IIK FLL+KTIDVLLYVDRLD YR+D LD+ V 
Sbjct: 83  SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVA 142

Query: 183 RAITSSLGKAIWRRTLVVLTHAQLSPPDGIDYNDFLARRSESLVRYIRSGAGIGKREYAD 362
           +AIT S GK IW + +V LTHAQ SPPDG+ Y++F ++RSE+L++ +RSGA + K   A 
Sbjct: 143 KAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQAS 202

Query: 363 FPLPIALAENSGRC 404
             +P+ L ENSGRC
Sbjct: 203 -DIPVVLIENSGRC 215

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>AIG1_ARATH (P54120) Protein AIG1|
          Length = 353

 Score = 34.7 bits (78), Expect = 0.055
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
 Frame = +3

Query: 3   TRAGFTLNIIDTPGL----IEGGYINEQAVEIIKRFLLEKTIDVLLYVDRLDTYRMDTLD 170
           T  G  LN+IDTPGL    +   +I ++ V+ +   L +  +  +L V  + T R+   +
Sbjct: 88  TPEGPILNVIDTPGLFDLSVSAEFIGKEIVKCLT--LADGGLHAVLLVLSVRT-RISQEE 144

Query: 171 EQVIRAITSSLGKAIWRRTLVVLTHAQLSPPDGIDYNDFL 290
           E V+  +    G  I    +VV T   +   DG+   D+L
Sbjct: 145 EMVLSTLQVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYL 184

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>CLPX_ANASP (Q8YQX7) ATP-dependent Clp protease ATP-binding subunit clpX|
          Length = 445

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
 Frame = +3

Query: 27  IIDTPGLIEGGYINEQAVEIIKRFLLEKTIDV------LLYVDRLDTYRMDTLDEQVIRA 188
           + D   L E GY+ E    I+ R L    +DV      ++Y+D +D     + +  + R 
Sbjct: 164 VADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQRGIIYIDEIDKIARKSENPSITRD 223

Query: 189 ITSSLGKAIWRRTLVVL--THAQLSPPDG--IDYNDFLARRSESLVRYIRSGAGIGKREY 356
           ++   G+ + +  L +L  T A + P  G    Y D + +   S + +I  GA +G  + 
Sbjct: 224 VS---GEGVQQALLKMLEGTVANVPPQGGRKHPYQDCI-QIDTSNILFICGGAFVGLEKV 279

Query: 357 AD 362
            D
Sbjct: 280 VD 281

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>MRAW_BLOFL (Q7VQJ5) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 321

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +3

Query: 60  YINEQAVEIIKRFLLEKTIDVLLYVDRLDTYRMDTLDEQVIRAITSSLGKAIWRRTLVVL 239
           YINE+ VEI+K  +L+    +L    RL     ++L++++++   +   +       + L
Sbjct: 216 YINEELVEIMK--ILQDVFKLLAPGGRLVVISFNSLEDRIVKKFINQYSRVFAYPPKIPL 273

Query: 240 THAQL 254
           TH QL
Sbjct: 274 THTQL 278

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>CLPX_SYNY3 (Q55510) ATP-dependent Clp protease ATP-binding subunit clpX|
          Length = 445

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
 Frame = +3

Query: 27  IIDTPGLIEGGYINEQAVEIIKRFLLEKTIDV------LLYVDRLDTYRMDTLDEQVIRA 188
           + D   L E GY+ E    I+ R L    +DV      ++Y+D +D     + +  + R 
Sbjct: 164 VADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQRGIIYIDEIDKIARKSENPSITRD 223

Query: 189 ITSSLGKAIWRRTLVVL--THAQLSPPDG--IDYNDFLARRSESLVRYIRSGAGIG 344
           ++   G+ + +  L +L  T A + P  G    Y D + +   S + +I  GA +G
Sbjct: 224 VS---GEGVQQALLKMLEGTVANVPPQGGRKHPYQDCI-QIDTSNILFICGGAFVG 275

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>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)|
          Length = 924

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +3

Query: 63  INEQAVEIIKRFLLEKTIDVLLYVDRLDTYRMDTLDEQVIRAITSSLGKAIWRRTLVVLT 242
           IN  A+E+++ F L+  +D  +Y         D L+EQ+ R +T  + +AI ++ L +L 
Sbjct: 435 INPYAIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMT--VEEAISQKRLFMLD 492

Query: 243 HAQLSPP 263
              L  P
Sbjct: 493 FHDLFLP 499

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>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC|
           1.13.11.12)
          Length = 941

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +3

Query: 63  INEQAVEIIKRFLLEKTIDVLLYVDRLDTYRMDTLDEQVIRAITSSLGKAIWRRTLVVLT 242
           IN  A+E+++ F L+  +D  +Y         D L+EQ+ R +T  + +AI ++ L +L 
Sbjct: 452 INPYAIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMT--VEEAISQKRLFMLD 509

Query: 243 HAQLSPP 263
              L  P
Sbjct: 510 FHDLFLP 516

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>CLPX_LEPIN (Q8F353) ATP-dependent Clp protease ATP-binding subunit clpX|
          Length = 420

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
 Frame = +3

Query: 27  IIDTPGLIEGGYINEQAVEIIKRFLLEKTIDV------LLYVDRLDTYRMDTLDEQVIRA 188
           I+D   L E GY+ E    II + +     D+      ++Y+D +D     +    + R 
Sbjct: 144 IVDATALTEAGYVGEDVENIILKLIQNADNDIKKAEVGIIYIDEVDKIARKSDSASITRD 203

Query: 189 ITSSLGKAIWRRTLVVL--THAQLSPPDG 269
           ++   G+ + +  L ++  T A + P  G
Sbjct: 204 VS---GEGVQQALLKIIEGTVANVPPQGG 229

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>CLPX_LEPIC (Q72SG5) ATP-dependent Clp protease ATP-binding subunit clpX|
          Length = 420

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
 Frame = +3

Query: 27  IIDTPGLIEGGYINEQAVEIIKRFLLEKTIDV------LLYVDRLDTYRMDTLDEQVIRA 188
           I+D   L E GY+ E    II + +     D+      ++Y+D +D     +    + R 
Sbjct: 144 IVDATALTEAGYVGEDVENIILKLIQNADNDIKKAEVGIIYIDEVDKIARKSDSASITRD 203

Query: 189 ITSSLGKAIWRRTLVVL--THAQLSPPDG 269
           ++   G+ + +  L ++  T A + P  G
Sbjct: 204 VS---GEGVQQALLKIIEGTVANVPPQGG 229

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>MTHR1_YEAST (P46151) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)|
          Length = 657

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 285 NHYSRFHQVGRVGHGSIQPRFFSKWPSQV 199
           N Y  FH+  ++ H SI P   S++P ++
Sbjct: 222 NSYLLFHRAAKLSHASIPPAILSRFPPEI 250

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>RPOC_BUCBP (Q89B21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1404

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
 Frame = +3

Query: 15   FTLNIIDTPGLIEGGYINEQAVEIIKRFLLEK-TIDVLLYVDRLDTYRMDTLDEQVIRAI 191
            + +N +     ++G  IN++ +E+I R +L K TI    + + LD  +++    +V    
Sbjct: 1232 YIINEVQEVYRLQGVKINDKHIEVIIRQMLRKATIIKSEHSEFLDGEQVEYSRIKVSNRN 1291

Query: 192  TSSLGK--AIWRRTLVVLTHAQLSPPDGIDYNDFLARRSESLVRYIRSGAGIGKRE 353
             S +GK  AI+ R L+ +T A L+    I    F     +   R +   +  GK++
Sbjct: 1292 LSKIGKKTAIFSRDLLGITKASLATESFISAASF-----QETTRVLTESSVAGKKD 1342

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>SCDA_STAES (Q8CQ32) Cell wall-related protein scdA|
          Length = 224

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 128 QEDINSLLQKKPLYDLNSLLIDIPTFNEPRSVDNVQGES 12
           QE I S +  KP  DLNSLL      N+   +DN +G S
Sbjct: 34  QESIASAVNHKPNIDLNSLL------NKLNHIDNTEGNS 66

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>SCDA_STAEQ (Q5HR69) Cell wall-related protein scdA|
          Length = 224

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 128 QEDINSLLQKKPLYDLNSLLIDIPTFNEPRSVDNVQGES 12
           QE I S +  KP  DLNSLL      N+   +DN +G S
Sbjct: 34  QESIASAVNHKPNIDLNSLL------NKLNHIDNTEGNS 66

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>HMDH2_GOSHI (O64967) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 (EC|
           1.1.1.34) (HMG-CoA reductase 2)
          Length = 628

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 23/97 (23%)
 Frame = +3

Query: 168 DEQVIRAIT----------SSLGK-----AIWRRTLVVLTHAQLS--PPDGIDYNDFLAR 296
           DE++I+++           S LG      AI R  L  LT   LS  P DG DY   L +
Sbjct: 214 DEEIIKSVVAGTLPSYSLESKLGDCKRAAAIRREALQRLTGRSLSGLPLDGFDYESILGQ 273

Query: 297 RSESLVRYIRSGAGI------GKREYADFPLPIALAE 389
             E  V Y++   GI        REY+   +P+A  E
Sbjct: 274 CCEMPVGYVQIPVGIAGPLLLNGREYS---VPMATTE 307

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>CLPX_PORGI (Q7MX10) ATP-dependent Clp protease ATP-binding subunit clpX|
          Length = 411

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
 Frame = +3

Query: 27  IIDTPGLIEGGYINEQAVEIIKRFLLEKTIDV------LLYVDRLDTYRMDTLDEQVIRA 188
           ++D   L E GY+ E    I+ R L     DV      ++++D +D     + +  + R 
Sbjct: 141 VVDATVLTEAGYVGEDIESILTRLLQAADYDVKQAERGIVFIDEIDKIARKSDNPSITRD 200

Query: 189 ITSSLGKAIWRRTLVVLTHAQLS-PPDG 269
           ++   G+ + +  L +L  + ++ PP G
Sbjct: 201 VS---GEGVQQGLLKLLEGSIVNVPPQG 225

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>VE6_HPV18 (P06463) Protein E6|
          Length = 158

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -1

Query: 236 YNQGSSPNGLPK*TSDGSYNLFIQCIHSICIQTINVQEDINSLLQKKPLYDL 81
           Y+     + L K T+ G YNL I+C+   C + +N  E +  L +K+  +++
Sbjct: 81  YSDSVYGDTLEKLTNTGLYNLLIRCLR--CQKPLNPAEKLRHLNEKRRFHNI 130

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>LON2_BORBU (O51558) ATP-dependent protease La homolog (EC 3.4.21.-)|
          Length = 813

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 232 TKVLLQMAFPSELVMALITCSSNVSILYVSKRSTYRRTSIVF 107
           +K++  +    +++  L+ C S V I  VSK++ Y R  + F
Sbjct: 93  SKLIQVIKISKDVIKVLVECQSRVLIDSVSKKNDYLRAKVTF 134

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>HMDH_CAMAC (P48021) 3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC|
           1.1.1.34) (HMG-CoA reductase)
          Length = 593

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
 Frame = +3

Query: 168 DEQVIR----------AITSSLGK-----AIWRRTLVVLTHAQLS--PPDGIDYNDFLAR 296
           DE++I+          A+ S LG      AI R  L  +T   L+  P DG DY+  L +
Sbjct: 179 DEEIIKSVVEGTTPSYALESKLGDSHRAAAIRREALQRMTKKSLAGLPLDGFDYDSILGQ 238

Query: 297 RSESLVRYIRSGAGIGKREYAD---FPLPIALAE 389
             E  V Y++   GI      D   + +P+A  E
Sbjct: 239 CCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTE 272

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>RPOC_PASMU (Q9CK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1417

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
 Frame = +3

Query: 15   FTLNIIDTPGLIEGGYINEQAVEIIKRFLLEKTIDVLLY-VDRLDTYRMDTLDEQVIRAI 191
            + +N +     ++G  IN++ +E+I R +L K I    Y  + L+  +++    +++   
Sbjct: 1232 YIVNEVQEVYRLQGVKINDKHIEVIVRQMLRKGIVTKAYDSEFLEGEQVEVARVKIVNRK 1291

Query: 192  TSSLGKAI--WRRTLVVLTHAQLSPPDGIDYNDFLARRSESLVRYIRSGAGIGKRE 353
              + GK +  + R L+ +T A L+    I    F     +   R +   A  GKR+
Sbjct: 1292 REAEGKPLVEFERELLGITKASLATESFISAASF-----QETTRVLTEAAVAGKRD 1342

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>RPOC_RHILO (Q98N65) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1398

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
 Frame = +3

Query: 9    AGFTLNIIDTPGLIEGGYINEQAVEIIKRFLLEK----TIDVLLYV--DRLDTYRMDTLD 170
            A + +N I     ++G  IN++ +E+I R +L+K    T     Y+  D +D   ++ ++
Sbjct: 1224 ASYLVNEIQEVYRLQGVSINDKHIEVIVRQMLQKVEITTQGDSTYIPGDHVDVIELEEVN 1283

Query: 171  EQVIRAITSSLGKAIWRRTLVVLTHAQLSPPDGIDYNDFLARRSESLVRYIRSGAGIGKR 350
            E   R I      A  +  L+ +T A L  P  I    F     +   R +   A  GK 
Sbjct: 1284 E---RLIEDGKKPAEGQPVLLGITKASLQTPSFISAASF-----QETTRVLTEAAVAGKT 1335

Query: 351  E 353
            +
Sbjct: 1336 D 1336

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>WIPI3_MOUSE (Q9CR39) WD-repeat domain phosphoinositide-interacting protein 3|
           (WIPI-3) (WD-repeat protein 45-like) (WDR45-like
           protein)
          Length = 344

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = -1

Query: 227 GSSPNGLPK*TSDGSYNLFI-----QCIHSICIQTINVQED 120
           G+ PN +    +DGSY  F+     +C+  +C Q + + +D
Sbjct: 302 GTEPNAVIAICADGSYYKFLFSPKGECVRDVCAQFLEMTDD 342

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>LPXK_CAUCR (P58184) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 335

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 253 SWAWVNTTKVLLQMAFPSELVMALITCSSNVSILYVSKRSTYRRTSIVFSRRNL 92
           SW W +TT+  +  A P+ +V A + C  NV++    K    R   +  ++R +
Sbjct: 28  SWLWADTTRRRIARATPA-IVGAPVICVGNVTMGGAGKTPIVRELLLTLTQRGV 80

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>KELC_DROME (Q04652) Ring canal kelch protein [Contains: Kelch short protein]|
          Length = 1477

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 172 NKL*EPSLVHLGRPFGEEPWLY*PMPNSPHLMESTIMISLQEDQSRLCDISVLVQE 339
           N L E S  H+ RP G+E        N  H   S   ++    Q +LCD+ ++  +
Sbjct: 110 NSLDESSQKHVQRPNGKERGTVGQYSNEQHTARSFDAMNEMRKQKQLCDVILVADD 165

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>OR1D5_HUMAN (P58170) Olfactory receptor 1D5 (Olfactory receptor 17-31)|
           (OR17-31)
          Length = 312

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = -2

Query: 268 PSGGESWAWVNTTKVLLQMAFPSELVMALITCSSN---VSILYVSKRSTYRRTSIVFSRR 98
           P G  + ++V   + +LQM   S+      TC+S+   VS+ Y +    Y +    +S +
Sbjct: 210 PLGFMTTSYVRIVRTILQMPSASKKYKTFSTCASHLGVVSLFYGTLAMVYLQPLHTYSMK 269

Query: 97  NLFMISTACSLIYPPSMSP 41
           +   ++T    +  P M+P
Sbjct: 270 D--SVATVMYAVLTPMMNP 286

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>NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
           (N-methyl D-aspartate receptor subtype 2C) (NR2C)
           (NMDAR2C)
          Length = 1239

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 324 GYIAQATLIFLQGNHYSRFHQVGRVGHGSIQPRFFSKWP 208
           GY+ Q T++ +  N +  +  VGR  HG +  + +  WP
Sbjct: 351 GYLVQPTMVVIALNRHRLWEMVGRWDHGVLYMK-YPVWP 388

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>HMDH3_HEVBR (Q00583) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 (EC|
           1.1.1.34) (HMG-CoA reductase 3)
          Length = 586

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 20/94 (21%)
 Frame = +3

Query: 168 DEQVIRAITSS----------LGKA-----IWRRTLVVLTHAQLS--PPDGIDYNDFLAR 296
           DEQ+I+++ S           LG       I R TL  ++   L   P DG DY   L +
Sbjct: 172 DEQIIKSVVSGSIPSYSLESKLGNCKRAALIRRETLQRMSGRSLEGLPLDGFDYESILGQ 231

Query: 297 RSESLVRYIRSGAGIGKREYAD---FPLPIALAE 389
             E  + Y++   GI      D   + +P+A  E
Sbjct: 232 CCEMAIGYVQIPVGIAGPLLLDGKEYTVPMATTE 265

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>KCY_MOUSE (Q9DBP5) UMP-CMP kinase (EC 2.7.4.14) (Cytidylate kinase)|
           (Deoxycytidylate kinase) (Cytidine monophosphate kinase)
           (Uridine monophosphate/cytidine monophosphate kinase)
           (UMP/CMP kinase) (UMP/CMPK) (Uridine monophosphate
           kinase)
          Length = 196

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
 Frame = -1

Query: 194 SDGSYNLFIQCIHSICIQTI---------------NVQEDINSLLQK-KPLYDLNSLLID 63
           +D S+ LF  C + ICI+                 ++++ I + L+  KP+ DL   +  
Sbjct: 112 ADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGK 171

Query: 62  IPTFNEPRSVDNVQGE 15
           +   +  +SVD V GE
Sbjct: 172 VKKIDASKSVDEVFGE 187

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>VPS13_YEAST (Q07878) Vacuolar protein sorting-associated protein VPS13|
            (Suppression of the onset of impotence protein 1)
          Length = 3144

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/62 (25%), Positives = 34/62 (54%)
 Frame = +3

Query: 51   EGGYINEQAVEIIKRFLLEKTIDVLLYVDRLDTYRMDTLDEQVIRAITSSLGKAIWRRTL 230
            +G Y+  + +EI  R+++  T+D+ + V   +T  MD      ++ I S++ K ++R   
Sbjct: 2307 KGKYLLSKVIEIAPRYIISNTLDIPIEV--CETGSMD------VQQIESNITKPLYRMRN 2358

Query: 231  VV 236
            +V
Sbjct: 2359 IV 2360

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>NMDE3_HUMAN (Q14957) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
           (N-methyl D-aspartate receptor subtype 2C) (NR2C)
           (NMDAR2C)
          Length = 1233

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 324 GYIAQATLIFLQGNHYSRFHQVGRVGHGSIQPRFFSKWP 208
           GY+ Q T++ +  N +  +  VGR  HG +  + +  WP
Sbjct: 351 GYLVQPTMVVIALNRHRLWEMVGRWEHGVLYMK-YPVWP 388

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>MTSA_STRSA (P31304) Manganese ABC transporter substrate-binding lipoprotein|
           precursor (Adhesin B) (Saliva-binding protein)
          Length = 309

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 400 LPLFSAKAIGKGKSAYSLLPIPAPERIYRTSDSDLLARKSL*SIPSGGESW 248
           + L S   +GK    Y     P PE + +TS +DL+    + ++ +GG +W
Sbjct: 54  IDLHSIVPVGKDPHEYE----PLPEDVKKTSQADLIFYNGI-NLETGGNAW 99

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>MTSA_STRPA (P31305) Manganese ABC transporter substrate-binding lipoprotein|
           precursor (Adhesin B) (Saliva-binding protein)
          Length = 309

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 400 LPLFSAKAIGKGKSAYSLLPIPAPERIYRTSDSDLLARKSL*SIPSGGESW 248
           + L S   +GK    Y     P PE + +TS +DL+    + ++ +GG +W
Sbjct: 54  IELHSIVPVGKDPHEYE----PLPEDVKKTSQADLIFYNGI-NLETGGNAW 99

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>RPOC_AGRT5 (Q8UE09) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1402

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
 Frame = +3

Query: 9    AGFTLNIIDTPGLIEGGYINEQAVEIIKRFLLEKT------IDVLLYVDRLDTYRMDTLD 170
            A + +N I     ++G  IN++ +E+I R +L+K           +  D +D   M+ ++
Sbjct: 1225 ASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEITDAGDSQYIVGDNVDRIEMEDMN 1284

Query: 171  EQVIRAITSSLGKAIWRRTLVVLTHAQLSPPDGIDYNDF 287
            +   R I      A     L+ +T A L  P  I    F
Sbjct: 1285 D---RLIEEGKKPAYGEPVLLGITKASLQTPSFISAASF 1320

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>RPC6_SCHPO (O94553) Probable DNA-directed RNA polymerase III 34 kDa|
           polypeptide (EC 2.7.7.6)
          Length = 301

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
 Frame = +3

Query: 117 DVLLY----VDRLDTYRMDTLDEQVIRAITSSLG-KAIWRRTLVVLTHAQLSPPDGIDYN 281
           +VL+Y    +D   T      DEQ++ +   + G + IWR+TL + T+  +S  D     
Sbjct: 65  NVLVYRAVRLDEAKTVSTMEGDEQIVYSFIKNSGNEGIWRKTLTLRTNLHVSVVD----R 120

Query: 282 DFLARRSESLVRYIRS 329
              +  S++LV+ I+S
Sbjct: 121 CLKSLESKNLVKSIKS 136

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>FLGG_BUCBP (Q89AH7) Flagellar basal-body rod protein flgG (Distal rod protein)|
          Length = 260

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = -1

Query: 230 QGSSPNGLPK*TSDGSYNLFIQCIHSICIQTINVQEDINSLLQKKPLYDLNSLLI 66
           Q +  +G P  +S GS+   +     +    +N+ E++ +++Q +  Y++NS +I
Sbjct: 193 QETEASGNPSISSPGSHGTGLLYQSYVETSNVNIAEELVNMIQAQRAYEINSKVI 247

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>SRY_CALUR (Q6TC43) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 220

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 404 APSTVLCQSYWQGKIRIFSFADSCTRTDISH 312
           A ST+LC+     K   F++ DSC+R   SH
Sbjct: 141 ASSTLLCRQVLVDKWYPFTYRDSCSRATHSH 171

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>SRY_ARCGZ (Q6TC44) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 220

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -1

Query: 404 APSTVLCQSYWQGKIRIFSFADSCTRTDISH-KRL*SSCKEIIIVDSIRWGELGMGQYNQ 228
           A S++LC+     K   F++ DSC+R   SH +   SS K + I +S+   E      + 
Sbjct: 141 ASSSLLCRQVLVDKWYPFTYRDSCSRATHSHMEDQLSSSKPVNIANSLLQREHHYSSTSL 200

Query: 227 GSSPNGL 207
             SP  L
Sbjct: 201 RGSPETL 207

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>Y191_CLOAB (Q97MK5) Putative HTH-type transcriptional regulator CAC0191|
          Length = 283

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/67 (25%), Positives = 36/67 (53%)
 Frame = -1

Query: 227 GSSPNGLPK*TSDGSYNLFIQCIHSICIQTINVQEDINSLLQKKPLYDLNSLLIDIPTFN 48
           GSS + + +     +Y  + +   +I   T+NV ++ N      P  DL++++ +I ++N
Sbjct: 46  GSSKSAVVRLCKILNYKGYKEFRIAIAKDTVNVDKEENRYTDINPKDDLHTIIKNI-SYN 104

Query: 47  EPRSVDN 27
             +S+DN
Sbjct: 105 NKKSIDN 111

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>UNC5D_HUMAN (Q6UXZ4) Netrin receptor UNC5D precursor (Unc-5 homolog D) (Unc-5|
           homolog 4)
          Length = 953

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = +2

Query: 308 ACAIYPF---WCRNRQKRICGFSL 370
           AC   PF   WC NRQ   C FSL
Sbjct: 769 ACQEVPFSRVWCSNRQPLHCAFSL 792

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>RPOC_SALTY (P0A2R4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1407

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
 Frame = +3

Query: 15   FTLNIIDTPGLIEGGYINEQAVEIIKRFLLEK-TIDVLLYVDRLDTYRMDTLDEQVIRAI 191
            + +N +     ++G  IN++ +E+I R +L K TI+     D L+  +++    ++    
Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSDFLEGEQVEYSRVKIANRE 1291

Query: 192  TSSLGK--AIWRRTLVVLTHAQLSPPDGIDYNDFLARRSESLVRYIRSGAGIGKRE 353
              + GK  A + R L+ +T A L+    I    F     +   R +   A  GKR+
Sbjct: 1292 LEANGKVGATFSRDLLGITKASLATESFISAASF-----QETTRVLTEAAVAGKRD 1342

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>RPOC_SALTI (P0A2R5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1407

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
 Frame = +3

Query: 15   FTLNIIDTPGLIEGGYINEQAVEIIKRFLLEK-TIDVLLYVDRLDTYRMDTLDEQVIRAI 191
            + +N +     ++G  IN++ +E+I R +L K TI+     D L+  +++    ++    
Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSDFLEGEQVEYSRVKIANRE 1291

Query: 192  TSSLGK--AIWRRTLVVLTHAQLSPPDGIDYNDFLARRSESLVRYIRSGAGIGKRE 353
              + GK  A + R L+ +T A L+    I    F     +   R +   A  GKR+
Sbjct: 1292 LEANGKVGATFSRDLLGITKASLATESFISAASF-----QETTRVLTEAAVAGKRD 1342

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>RPOC_SALPA (Q5PK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1407

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
 Frame = +3

Query: 15   FTLNIIDTPGLIEGGYINEQAVEIIKRFLLEK-TIDVLLYVDRLDTYRMDTLDEQVIRAI 191
            + +N +     ++G  IN++ +E+I R +L K TI+     D L+  +++    ++    
Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSDFLEGEQVEYSRVKIANRE 1291

Query: 192  TSSLGK--AIWRRTLVVLTHAQLSPPDGIDYNDFLARRSESLVRYIRSGAGIGKRE 353
              + GK  A + R L+ +T A L+    I    F     +   R +   A  GKR+
Sbjct: 1292 LEANGKVGATFSRDLLGITKASLATESFISAASF-----QETTRVLTEAAVAGKRD 1342

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>RPOC_SALCH (Q57H68) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1407

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
 Frame = +3

Query: 15   FTLNIIDTPGLIEGGYINEQAVEIIKRFLLEK-TIDVLLYVDRLDTYRMDTLDEQVIRAI 191
            + +N +     ++G  IN++ +E+I R +L K TI+     D L+  +++    ++    
Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSDFLEGEQVEYSRVKIANRE 1291

Query: 192  TSSLGK--AIWRRTLVVLTHAQLSPPDGIDYNDFLARRSESLVRYIRSGAGIGKRE 353
              + GK  A + R L+ +T A L+    I    F     +   R +   A  GKR+
Sbjct: 1292 LEANGKVGATFSRDLLGITKASLATESFISAASF-----QETTRVLTEAAVAGKRD 1342

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>HMDH1_GOSHI (O64966) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (EC|
           1.1.1.34) (HMG-CoA reductase 1)
          Length = 585

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 23/108 (21%)
 Frame = +3

Query: 135 DRLDTYRMDTLDEQVIRAITSSL---------------GKAIWRRTLVVLTHAQLS--PP 263
           D +    M   DE++IR++   +                 AI R  L  +T   LS  P 
Sbjct: 160 DEMPVTVMTEEDEEIIRSVVCGMTPSYSLESKLDDCKRAAAIRREALQRITGKSLSGLPL 219

Query: 264 DGIDYNDFLARRSESLVRYIRSGAGI------GKREYADFPLPIALAE 389
           DG DY   L +  E  V Y +   GI        REY+   +P+A  E
Sbjct: 220 DGFDYESILGQCCEMPVGYEQIPVGIAGPLLLNGREYS---VPMATTE 264

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>VS48_TBRVC (P22048) Satellite RNA 48 kDa protein|
          Length = 419

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 382 KAIGKGKSAYSLLPIPAPERIYRTSDSDLLARK 284
           K +G GKS   +L  PA  +I  T +S LLA+K
Sbjct: 108 KVVGGGKSYKDVLTTPATIQIKPTPESILLAQK 140

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>RPOC_HAEI8 (Q4QN34) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1416

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
 Frame = +3

Query: 15   FTLNIIDTPGLIEGGYINEQAVEIIKRFLLEKTIDVLLY-VDRLDTYRMDTLDEQVIRAI 191
            + +N +     ++G  IN++ +E+I R +L K +    Y  + L+  +++    +++   
Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAVITKAYDSEFLEGEQVEVARVKIVNRQ 1291

Query: 192  TSSLGK--AIWRRTLVVLTHAQLSPPDGIDYNDFLARRSESLVRYIRSGAGIGKRE 353
              + GK    + R L+ +T A L+    I    F     +   R +   A  GKR+
Sbjct: 1292 REAEGKPPVEFERELLGITKASLATESFISAASF-----QETTRVLTEAAVAGKRD 1342

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>MTSA_STRR6 (P0A4G3) Manganese ABC transporter substrate-binding lipoprotein|
           precursor (Pneumococcal surface adhesin A)
          Length = 309

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -2

Query: 400 LPLFSAKAIGKGKSAYSLLPIPAPERIYRTSDSDLLARKSL*SIPSGGESW 248
           + L S   IG+    Y     P PE + +TS++DL+    + ++ +GG +W
Sbjct: 54  IDLHSIVPIGQDPHEYE----PLPEDVKKTSEADLIFYNGI-NLETGGNAW 99

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>MTSA_STRMT (Q9L5X0) Manganese ABC transporter substrate-binding lipoprotein|
           precursor (Pneumococcal surface adhesin A)
          Length = 309

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -2

Query: 400 LPLFSAKAIGKGKSAYSLLPIPAPERIYRTSDSDLLARKSL*SIPSGGESW 248
           + L S   IG+    Y     P PE + +TS++DL+    + ++ +GG +W
Sbjct: 54  IDLHSIVPIGQDPHEYE----PLPEDVKKTSEADLIFYNGI-NLETGGNAW 99

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>MTSA1_STRPN (P0A4G2) Manganese ABC transporter substrate-binding lipoprotein|
           precursor (Pneumococcal surface adhesin A)
          Length = 309

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -2

Query: 400 LPLFSAKAIGKGKSAYSLLPIPAPERIYRTSDSDLLARKSL*SIPSGGESW 248
           + L S   IG+    Y     P PE + +TS++DL+    + ++ +GG +W
Sbjct: 54  IDLHSIVPIGQDPHEYE----PLPEDVKKTSEADLIFYNGI-NLETGGNAW 99

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>RPOC_PARUW (Q6MDM0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1388

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
 Frame = +3

Query: 15   FTLNIIDTPGLIEGGYINEQAVEIIKRFLLEK--TID----VLLYVDRLDTYRMDTLDEQ 176
            + +N +     ++G  IN++ +EII R +L+K   ID     LLY + +D    +  +++
Sbjct: 1233 YLVNQVQEVYRLQGVDINDKHIEIIVRQMLKKVRVIDPGDTSLLYGEEVDKKEFEVENQK 1292

Query: 177  VIRAITSSLGKAIWRR-TLVVLTHAQLSPPDGIDYNDFLARRSESLVRYIRSGAGIGKRE 353
            V    +   GKA      L+ +T A LS    I    F     +   R +   A  GK +
Sbjct: 1293 V----SQEGGKAAQATPVLLGITKASLSTESFISAASF-----QDTTRVLTEAACAGKTD 1343

Query: 354  Y 356
            Y
Sbjct: 1344 Y 1344

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>RPOC_HAEIN (P43739) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1415

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
 Frame = +3

Query: 15   FTLNIIDTPGLIEGGYINEQAVEIIKRFLLEKTIDVLLY-VDRLDTYRMDTLDEQVIRAI 191
            + +N +     ++G  IN++ +E+I R +L K +    Y  + L+  +++    +++   
Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAVITKAYDSEFLEGEQVEVARVKIVNRQ 1291

Query: 192  TSSLGK--AIWRRTLVVLTHAQLSPPDGIDYNDFLARRSESLVRYIRSGAGIGKRE 353
              + GK    + R L+ +T A L+    I    F     +   R +   A  GKR+
Sbjct: 1292 REAEGKPPVEFERELLGITKASLATESFISAASF-----QETTRVLTEAAVAGKRD 1342


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,187,595
Number of Sequences: 219361
Number of extensions: 1481286
Number of successful extensions: 4400
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 4320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4397
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result