| Clone Name | bags36l06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY107292.1| Zea mays PCO067487 mRNA sequence Length = 1391 Score = 402 bits (203), Expect = e-109 Identities = 356/407 (87%) Strand = Plus / Plus Query: 1 gcaccagggcaggattcaccttgaacattatcgacactcctgggctcattgaaggtgggt 60 |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| | Sbjct: 414 gcacaagggcagggttcaccttgaacattatcgacactcctgggcttattgaaggtggat 473 Query: 61 atatcaatgagcaggctgttgagatcataaagaggtttcttctggagaagactattgatg 120 | || ||||||||||| ||||| ||||| ||||| |||||||| | ||||||||||||| Sbjct: 474 acattaatgagcaggccgttgacatcattaagagatttcttctaggcaagactattgatg 533 Query: 121 tcctcctgtacgttgatcgtttggatacatatagaatggatacattggatgaacaagtta 180 | ||||||||||| |||||||||||| | ||||||||||||||| |||||||||| |||| Sbjct: 534 ttctcctgtacgtggatcgtttggatgcgtatagaatggatacactggatgaacaggtta 593 Query: 181 taagagccatcactagttcacttgggaaggccatttggagaagaaccttggttgtattga 240 ||||||||||||| | |||| |||| || | |||||| ||||| | |||||||| |||| Sbjct: 594 taagagccatcaccaattcatttggaaaagatatttggcgaagatcattggttgtgttga 653 Query: 241 cccatgcccaactctccccacctgatggaatcgactataatgatttccttgcaagaagat 300 ||||||| |||||||| |||||||||||||||||||||||||||||| || ||||||||| Sbjct: 654 cccatgctcaactctcaccacctgatggaatcgactataatgatttctttacaagaagat 713 Query: 301 cagagtcgcttgtgcgatatatccgttctggtgcaggaatcggcaaaagagaatatgcgg 360 ||||| | ||| ||||||| |||| || || ||||||||| ||| ||||||||| || Sbjct: 714 cagaggcacttttgcgatacatccactcgggagcaggaatcaagaaacgagaatatgggg 773 Query: 361 attttcccttgccaatagctttggcagagaacagtggaaggtgcaag 407 |||| || ||||||||||| |||| |||||||||||||||||||||| Sbjct: 774 atttccctttgccaatagcattggtagagaacagtggaaggtgcaag 820
>emb|AJ271049.1|ZMA271049 Zea mays mRNA for Toc34-2 protein (toc34B gene) Length = 1313 Score = 394 bits (199), Expect = e-107 Identities = 355/407 (87%) Strand = Plus / Plus Query: 1 gcaccagggcaggattcaccttgaacattatcgacactcctgggctcattgaaggtgggt 60 |||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||| | Sbjct: 371 gcacaagggcagggttcactttgaacattatcgacactcctgggcttattgaaggtggat 430 Query: 61 atatcaatgagcaggctgttgagatcataaagaggtttcttctggagaagactattgatg 120 | || ||||||||||| ||||| ||||| ||||| |||||||| | |||||||| |||| Sbjct: 431 acattaatgagcaggccgttgacatcattaagagatttcttctaggcaagactatcgatg 490 Query: 121 tcctcctgtacgttgatcgtttggatacatatagaatggatacattggatgaacaagtta 180 | ||||||||||| |||||||||||| | ||||||||||||||| |||||||||| |||| Sbjct: 491 ttctcctgtacgtggatcgtttggatgcgtatagaatggatacactggatgaacaggtta 550 Query: 181 taagagccatcactagttcacttgggaaggccatttggagaagaaccttggttgtattga 240 ||||||||||||| | |||| |||| || | |||||| ||||| | |||||||| |||| Sbjct: 551 taagagccatcaccaattcatttggaaaagatatttggcgaagatcattggttgtgttga 610 Query: 241 cccatgcccaactctccccacctgatggaatcgactataatgatttccttgcaagaagat 300 ||||||| |||||||| |||||||||||||||||||||||||||||| || ||||||||| Sbjct: 611 cccatgctcaactctcaccacctgatggaatcgactataatgatttctttacaagaagat 670 Query: 301 cagagtcgcttgtgcgatatatccgttctggtgcaggaatcggcaaaagagaatatgcgg 360 ||||| | ||| ||||||| |||| || || ||||||||| |||| ||||||||| || Sbjct: 671 cagaggcacttttgcgatacatccactcaggagcaggaatcaacaaacgagaatatgggg 730 Query: 361 attttcccttgccaatagctttggcagagaacagtggaaggtgcaag 407 |||| |||||||||||||| |||| ||||||||||||||||||||| Sbjct: 731 atttccccttgccaatagcattggtggagaacagtggaaggtgcaag 777
>dbj|AK099032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128A13, full insert sequence Length = 1321 Score = 392 bits (198), Expect = e-106 Identities = 354/406 (87%) Strand = Plus / Plus Query: 1 gcaccagggcaggattcaccttgaacattatcgacactcctgggctcattgaaggtgggt 60 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | Sbjct: 371 gcaccagggcaggcttcaccttgaacattattgacactcctgggctcattgaaggtggat 430 Query: 61 atatcaatgagcaggctgttgagatcataaagaggtttcttctggagaagactattgatg 120 | ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 431 acatcaatgagcaggctgttgagatcataaaaaggtttcttctgggcaagactattgatg 490 Query: 121 tcctcctgtacgttgatcgtttggatacatatagaatggatacattggatgaacaagtta 180 ||||||| || || ||||| |||||| |||| |||||||| || |||||||| ||||||| Sbjct: 491 tcctcctttatgtggatcgattggatgcatacagaatggacacgttggatgatcaagtta 550 Query: 181 taagagccatcactagttcacttgggaaggccatttggagaagaaccttggttgtattga 240 | ||||| |||| | |||| |||| |||||||||||| ||||||| ||||||||||| | Sbjct: 551 ttagagctgtcaccaattcatttggaaaggccatttggcgaagaacattggttgtattaa 610 Query: 241 cccatgcccaactctccccacctgatggaatcgactataatgatttccttgcaagaagat 300 | ||||| || ||||| |||||||||||| | |||||||| |||||| || ||| ||||| Sbjct: 611 cacatgctcagctctcaccacctgatggacttgactataacgatttctttacaaaaagat 670 Query: 301 cagagtcgcttgtgcgatatatccgttctggtgcaggaatcggcaaaagagaatatgcgg 360 | ||||| ||| ||||||| || ||| ||||||||||| || ||||| ||||| || || Sbjct: 671 ctgagtcacttttgcgatacattcgtgctggtgcaggagtcagcaaacgagaacttgggg 730 Query: 361 attttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 |||||||||||||||| || |||| |||||||||||||||||||| Sbjct: 731 attttcccttgccaattgcattggtggagaacagtggaaggtgcaa 776
>dbj|AK058676.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H08, full insert sequence Length = 1406 Score = 377 bits (190), Expect = e-101 Identities = 352/406 (86%) Strand = Plus / Plus Query: 1 gcaccagggcaggattcaccttgaacattatcgacactcctgggctcattgaaggtgggt 60 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | Sbjct: 448 gcaccagggcaggcttcaccttgaacattattgacactcctgggctcattgaaggtggat 507 Query: 61 atatcaatgagcaggctgttgagatcataaagaggtttcttctggagaagactattgatg 120 | | ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| Sbjct: 508 acaccaatgagcaggctgttgagatcataaaaaggtttcttctgggcaagactatcgatg 567 Query: 121 tcctcctgtacgttgatcgtttggatacatatagaatggatacattggatgaacaagtta 180 ||||||| || || ||||| |||||| |||| |||||||| || |||||||| ||||||| Sbjct: 568 tcctcctttatgtggatcgattggatgcatacagaatggacacgttggatgatcaagtta 627 Query: 181 taagagccatcactagttcacttgggaaggccatttggagaagaaccttggttgtattga 240 | ||||| |||| | |||| |||| |||||||||||| ||||||| ||||||||||| | Sbjct: 628 ttagagctgtcaccaattcatttggaaaggccatttggcgaagaacattggttgtattaa 687 Query: 241 cccatgcccaactctccccacctgatggaatcgactataatgatttccttgcaagaagat 300 | ||||| || ||||| |||||||||||| | |||||||| |||||| || ||| ||||| Sbjct: 688 cacatgctcagctctcaccacctgatggacttgactataacgatttctttacaaaaagat 747 Query: 301 cagagtcgcttgtgcgatatatccgttctggtgcaggaatcggcaaaagagaatatgcgg 360 | ||||| ||| ||||||| || ||| ||||||||||| || ||||| ||||| || || Sbjct: 748 ctgagtcacttttgcgatacattcgtgctggtgcaggagtcagcaaacgagaacttgggg 807 Query: 361 attttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 |||||||||||||||| || |||| |||||||||||||||||||| Sbjct: 808 attttcccttgccaattgcattggtggagaacagtggaaggtgcaa 853
>emb|AJ245968.2|ZMA245968 Zea mays mRNA for Toc34-1 protein (toc34A gene) Length = 1233 Score = 371 bits (187), Expect = 1e-99 Identities = 352/407 (86%) Strand = Plus / Plus Query: 1 gcaccagggcaggattcaccttgaacattatcgacactcctgggctcattgaaggtgggt 60 |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| | Sbjct: 325 gcacaagggcagggttcaccttgaacattatcgacactcctgggcttattgaaggtggat 384 Query: 61 atatcaatgagcaggctgttgagatcataaagaggtttcttctggagaagactattgatg 120 | || ||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||| Sbjct: 385 acattaatgagcaggctgttgacatcattaagagatttcttctgggcaagactattgatg 444 Query: 121 tcctcctgtacgttgatcgtttggatacatatagaatggatacattggatgaacaagtta 180 | |||||||| || |||||||||||| | || |||||||||||| | |||| ||| |||| Sbjct: 445 ttctcctgtatgtggatcgtttggatgcgtacagaatggatacacttgatggacaggtta 504 Query: 181 taagagccatcactagttcacttgggaaggccatttggagaagaaccttggttgtattga 240 ||||||||||||| | |||| |||| || | |||||| ||||| | |||||||| |||| Sbjct: 505 taagagccatcaccaattcatttggaaaagatatttggcgaagatcattggttgtgttga 564 Query: 241 cccatgcccaactctccccacctgatggaatcgactataatgatttccttgcaagaagat 300 ||||||| |||||||| ||||||||||||||||| |||||||||||| || ||||||| | Sbjct: 565 cccatgctcaactctcaccacctgatggaatcgagtataatgatttctttacaagaaggt 624 Query: 301 cagagtcgcttgtgcgatatatccgttctggtgcaggaatcggcaaaagagaatatgcgg 360 ||||| | ||| ||||||| |||| || || ||||||||| ||| ||||||||| || Sbjct: 625 cagaggcacttttgcgatacatccactcgggagcaggaatcaagaaacgagaatatgggg 684 Query: 361 attttcccttgccaatagctttggcagagaacagtggaaggtgcaag 407 |||| || ||||||||||| |||| |||||||||||||||||||||| Sbjct: 685 atttccctttgccaatagcattggtagagaacagtggaaggtgcaag 731
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 200 bits (101), Expect = 3e-48 Identities = 221/261 (84%) Strand = Plus / Minus Query: 93 aggtttcttctggagaagactattgatgtcctcctgtacgttgatcgtttggatacatat 152 ||||||||||||| |||||||||||||||||||| || || ||||| |||||| |||| Sbjct: 7405763 aggtttcttctgggcaagactattgatgtcctcctttatgtggatcgattggatgcatac 7405704 Query: 153 agaatggatacattggatgaacaagttataagagccatcactagttcacttgggaaggcc 212 |||||||| || |||||||| |||||||| ||||| |||| | |||| |||| |||||| Sbjct: 7405703 agaatggacacgttggatgatcaagttattagagctgtcaccaattcatttggaaaggcc 7405644 Query: 213 atttggagaagaaccttggttgtattgacccatgcccaactctccccacctgatggaatc 272 |||||| ||||||| ||||||||||| || ||||| || ||||| |||||||||||| | Sbjct: 7405643 atttggcgaagaacattggttgtattaacacatgctcagctctcaccacctgatggactt 7405584 Query: 273 gactataatgatttccttgcaagaagatcagagtcgcttgtgcgatatatccgttctggt 332 |||||||| |||||| || ||| |||||| ||||| ||| ||||||| || ||| ||||| Sbjct: 7405583 gactataacgatttctttacaaaaagatctgagtcacttttgcgatacattcgtgctggt 7405524 Query: 333 gcaggaatcggcaaaagagaa 353 |||||| || ||||| ||||| Sbjct: 7405523 gcaggagtcagcaaacgagaa 7405503 Score = 151 bits (76), Expect = 2e-33 Identities = 91/96 (94%) Strand = Plus / Minus Query: 1 gcaccagggcaggattcaccttgaacattatcgacactcctgggctcattgaaggtgggt 60 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | Sbjct: 7406871 gcaccagggcaggcttcaccttgaacattattgacactcctgggctcattgaaggtggat 7406812 Query: 61 atatcaatgagcaggctgttgagatcataaagaggt 96 | ||||||||||||||||||||||||||||| |||| Sbjct: 7406811 acatcaatgagcaggctgttgagatcataaaaaggt 7406776 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 359 ggattttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 |||||||||||||||||| || |||| |||||||||||||||||||| Sbjct: 7404445 ggattttcccttgccaattgcattggtggagaacagtggaaggtgcaa 7404398
>gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0071C04, from chromosome 3, complete sequence Length = 126078 Score = 200 bits (101), Expect = 3e-48 Identities = 221/261 (84%) Strand = Plus / Minus Query: 93 aggtttcttctggagaagactattgatgtcctcctgtacgttgatcgtttggatacatat 152 ||||||||||||| |||||||||||||||||||| || || ||||| |||||| |||| Sbjct: 44318 aggtttcttctgggcaagactattgatgtcctcctttatgtggatcgattggatgcatac 44259 Query: 153 agaatggatacattggatgaacaagttataagagccatcactagttcacttgggaaggcc 212 |||||||| || |||||||| |||||||| ||||| |||| | |||| |||| |||||| Sbjct: 44258 agaatggacacgttggatgatcaagttattagagctgtcaccaattcatttggaaaggcc 44199 Query: 213 atttggagaagaaccttggttgtattgacccatgcccaactctccccacctgatggaatc 272 |||||| ||||||| ||||||||||| || ||||| || ||||| |||||||||||| | Sbjct: 44198 atttggcgaagaacattggttgtattaacacatgctcagctctcaccacctgatggactt 44139 Query: 273 gactataatgatttccttgcaagaagatcagagtcgcttgtgcgatatatccgttctggt 332 |||||||| |||||| || ||| |||||| ||||| ||| ||||||| || ||| ||||| Sbjct: 44138 gactataacgatttctttacaaaaagatctgagtcacttttgcgatacattcgtgctggt 44079 Query: 333 gcaggaatcggcaaaagagaa 353 |||||| || ||||| ||||| Sbjct: 44078 gcaggagtcagcaaacgagaa 44058 Score = 151 bits (76), Expect = 2e-33 Identities = 91/96 (94%) Strand = Plus / Minus Query: 1 gcaccagggcaggattcaccttgaacattatcgacactcctgggctcattgaaggtgggt 60 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | Sbjct: 45426 gcaccagggcaggcttcaccttgaacattattgacactcctgggctcattgaaggtggat 45367 Query: 61 atatcaatgagcaggctgttgagatcataaagaggt 96 | ||||||||||||||||||||||||||||| |||| Sbjct: 45366 acatcaatgagcaggctgttgagatcataaaaaggt 45331 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 359 ggattttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 |||||||||||||||||| || |||| |||||||||||||||||||| Sbjct: 43000 ggattttcccttgccaattgcattggtggagaacagtggaaggtgcaa 42953
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 200 bits (101), Expect = 3e-48 Identities = 221/261 (84%) Strand = Plus / Minus Query: 93 aggtttcttctggagaagactattgatgtcctcctgtacgttgatcgtttggatacatat 152 ||||||||||||| |||||||||||||||||||| || || ||||| |||||| |||| Sbjct: 7403598 aggtttcttctgggcaagactattgatgtcctcctttatgtggatcgattggatgcatac 7403539 Query: 153 agaatggatacattggatgaacaagttataagagccatcactagttcacttgggaaggcc 212 |||||||| || |||||||| |||||||| ||||| |||| | |||| |||| |||||| Sbjct: 7403538 agaatggacacgttggatgatcaagttattagagctgtcaccaattcatttggaaaggcc 7403479 Query: 213 atttggagaagaaccttggttgtattgacccatgcccaactctccccacctgatggaatc 272 |||||| ||||||| ||||||||||| || ||||| || ||||| |||||||||||| | Sbjct: 7403478 atttggcgaagaacattggttgtattaacacatgctcagctctcaccacctgatggactt 7403419 Query: 273 gactataatgatttccttgcaagaagatcagagtcgcttgtgcgatatatccgttctggt 332 |||||||| |||||| || ||| |||||| ||||| ||| ||||||| || ||| ||||| Sbjct: 7403418 gactataacgatttctttacaaaaagatctgagtcacttttgcgatacattcgtgctggt 7403359 Query: 333 gcaggaatcggcaaaagagaa 353 |||||| || ||||| ||||| Sbjct: 7403358 gcaggagtcagcaaacgagaa 7403338 Score = 151 bits (76), Expect = 2e-33 Identities = 91/96 (94%) Strand = Plus / Minus Query: 1 gcaccagggcaggattcaccttgaacattatcgacactcctgggctcattgaaggtgggt 60 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | Sbjct: 7404706 gcaccagggcaggcttcaccttgaacattattgacactcctgggctcattgaaggtggat 7404647 Query: 61 atatcaatgagcaggctgttgagatcataaagaggt 96 | ||||||||||||||||||||||||||||| |||| Sbjct: 7404646 acatcaatgagcaggctgttgagatcataaaaaggt 7404611 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 359 ggattttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 |||||||||||||||||| || |||| |||||||||||||||||||| Sbjct: 7402280 ggattttcccttgccaattgcattggtggagaacagtggaaggtgcaa 7402233
>gb|DQ228327.1| Solanum tuberosum clone 135F10 GTP-binding-like protein mRNA, complete cds Length = 1129 Score = 83.8 bits (42), Expect = 4e-13 Identities = 126/154 (81%) Strand = Plus / Plus Query: 7 gggcaggattcaccttgaacattatcgacactcctgggctcattgaaggtgggtatatca 66 |||||| ||| || ||||||||||||||||| || ||||| ||||||| || ||| ||| Sbjct: 260 gggcagaatttacattgaacattatcgacacccccgggctggttgaaggaggatatgtca 319 Query: 67 atgagcaggctgttgagatcataaagaggtttcttctggagaagactattgatgtcctcc 126 |||| |||||| |||| ||||||||||||| || ||| | ||||| |||||||| | | Sbjct: 320 atgaccaggctcttgatctcataaagaggttcctcctgaacaagacaattgatgttttgc 379 Query: 127 tgtacgttgatcgtttggatacatatagaatgga 160 | || || |||||| | |||||||||||| |||| Sbjct: 380 tctatgtggatcgtcttgatacatatagagtgga 413
>gb|BT014489.1| Lycopersicon esculentum clone 133849F, mRNA sequence Length = 1430 Score = 79.8 bits (40), Expect = 6e-12 Identities = 121/148 (81%) Strand = Plus / Plus Query: 7 gggcaggattcaccttgaacattatcgacactcctgggctcattgaaggtgggtatatca 66 |||||| ||| || ||||||||||||||||| || ||||| ||||||| || ||| ||| Sbjct: 308 gggcagaatttacattgaacattatcgacacccccgggctggttgaaggaggatatgtca 367 Query: 67 atgagcaggctgttgagatcataaagaggtttcttctggagaagactattgatgtcctcc 126 |||| |||||| |||| ||||||||||||| || ||| | ||||| |||||||| | | Sbjct: 368 atgaccaggctcttgatctcataaagaggttcctcctgaacaagacaattgatgttttgc 427 Query: 127 tgtacgttgatcgtttggatacatatag 154 | || || |||||| | ||||||||||| Sbjct: 428 tttatgtggatcgtcttgatacatatag 455
>emb|Z28341.1|PSCLOEP P.sativum (miranda) mRNA for chloroplast outer envelope protein 34 Length = 1303 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 6 agggcaggattcaccttgaacattatcgacactcctgggctcattgaaggtgggtatatc 65 |||||||| || || ||||||||||||||||||||||| || |||||||| || || ||| Sbjct: 320 agggcaggttttacattgaacattatcgacactcctggtcttattgaagggggatacatc 379 Query: 66 aatga 70 ||||| Sbjct: 380 aatga 384
>gb|L36856.1|PEAIAP34A Pisum sativum GTP-binding protein (IAP34) mRNA, complete cds Length = 1322 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 6 agggcaggattcaccttgaacattatcgacactcctgggctcattgaaggtgggtatatc 65 |||||||| || || ||||||||||||||||||||||| || |||||||| || || ||| Sbjct: 347 agggcaggttttacattgaacattatcgacactcctggtcttattgaagggggatacatc 406 Query: 66 aatga 70 ||||| Sbjct: 407 aatga 411
>gb|AC149134.2| Medicago truncatula, complete sequence Length = 133336 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 21 ttgaacattatcgacactcctgggctcattgaaggtgggtatatcaatga 70 |||||||||||||| |||||||| || |||||||| ||||| |||||||| Sbjct: 114273 ttgaacattatcgatactcctggtcttattgaaggggggtacatcaatga 114224
>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02, complete sequence Length = 131922 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 359 ggattttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 ||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 77365 ggattttcccttgccaataatattggtggagaacagtggaaggtgcaa 77318
>gb|AC116926.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1341F06, from chromosome 10, complete sequence Length = 102520 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 359 ggattttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 ||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 97078 ggattttcccttgccaataatattggtggagaacagtggaaggtgcaa 97125
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 359 ggattttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 ||||||||||||||||||||| |||| |||| |||||||||||||| Sbjct: 14704812 ggattttcccttgccaatagcattggtggagataagtggaaggtgcaa 14704859
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 359 ggattttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 ||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 11269377 ggattttcccttgccaataatattggtggagaacagtggaaggtgcaa 11269330
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 359 ggattttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 ||||||||||||||||||||| |||| |||| |||||||||||||| Sbjct: 9723887 ggattttcccttgccaatagcattggtggagataagtggaaggtgcaa 9723840
>dbj|AP005123.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1015H11 Length = 156897 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 359 ggattttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 ||||||||||||||||||||| |||| |||| |||||||||||||| Sbjct: 121367 ggattttcccttgccaatagcattggtggagataagtggaaggtgcaa 121320
>dbj|AK069144.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023005J09, full insert sequence Length = 3631 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 359 ggattttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 ||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 2839 ggattttcccttgccaataatattggtggagaacagtggaaggtgcaa 2886
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 359 ggattttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 ||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 11275817 ggattttcccttgccaataatattggtggagaacagtggaaggtgcaa 11275770
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 359 ggattttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 ||||||||||||||||||||| |||| |||| |||||||||||||| Sbjct: 14659096 ggattttcccttgccaatagcattggtggagataagtggaaggtgcaa 14659143
>emb|AL954159.4|CNS08CCX Oryza sativa chromosome 12, . BAC OSJNBa0057C04 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131673 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 359 ggattttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 ||||||||||||||||||||| |||| |||| |||||||||||||| Sbjct: 39273 ggattttcccttgccaatagcattggtggagataagtggaaggtgcaa 39226
>emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC OSJNBa0037B01 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133207 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 359 ggattttcccttgccaatagctttggcagagaacagtggaaggtgcaa 406 ||||||||||||||||||||| |||| |||| |||||||||||||| Sbjct: 113987 ggattttcccttgccaatagcattggtggagataagtggaaggtgcaa 113940
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 230 ggttgtattgacccatgccca 250 ||||||||||||||||||||| Sbjct: 2113379 ggttgtattgacccatgccca 2113359
>ref|XM_512123.1| PREDICTED: Pan troglodytes KIAA0427 (LOC455409), mRNA Length = 5226 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 gacccatgcccaactctccccacc 262 ||||||| |||||||||||||||| Sbjct: 3013 gacccatccccaactctccccacc 3036
>gb|AC125016.20| Mus musculus chromosome 7, clone RP24-157A17, complete sequence Length = 176607 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 gccaatagctttggcagaga 390 |||||||||||||||||||| Sbjct: 108784 gccaatagctttggcagaga 108765
>gb|AY377856.1| Brassica napus TOC33 (Toc33) gene, complete cds; nuclear gene for chloroplast product Length = 1376 Score = 40.1 bits (20), Expect = 5.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 224 aaccttggttgtattgacccatgcccaactctccccacctgatg 267 ||||||| |||| ||||| ||||| || ||||||||||||||| Sbjct: 690 aaccttgcttgttttgactcatgctcagttctccccacctgatg 733
>gb|AY369783.1| Brassica napus TOC33 (Toc33) gene, complete cds; nuclear gene for chloroplast product Length = 1370 Score = 40.1 bits (20), Expect = 5.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 224 aaccttggttgtattgacccatgcccaactctccccacctgatg 267 ||||||| |||| ||||| ||||| || ||||||||||||||| Sbjct: 688 aaccttgcttgttttgactcatgctcagttctccccacctgatg 731
>emb|AL589655.5| Human DNA sequence from clone RP11-420A21 on chromosome 6 Contains a pseudogene similar to an integrin Alpha-E precursor fragment and part of the TEX27 gene for testis expressed sequence 27 (FLJ13222), complete sequence Length = 160789 Score = 40.1 bits (20), Expect = 5.4 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 214 tttggagaag-aaccttggttgtattga 240 |||||||||| ||||||||||||||||| Sbjct: 130052 tttggagaagtaaccttggttgtattga 130079
>gb|AC093567.13| Homo sapiens chromosome 18, clone RP11-484L8, complete sequence Length = 174698 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 gacccatgcccaactctccccacc 262 ||||||| |||||||||||||||| Sbjct: 33697 gacccatccccaactctccccacc 33720
>emb|AL121955.20|HSDJ62D2 Human DNA sequence from clone RP1-62D2 on chromosome 6 Contains the 3' end of the gene for a novel protein similar to synaptonemal complex protein 2 (SYCP2), the ELOVL2 gene for elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2 (SSC2), a novel gene and a CpG island, complete sequence Length = 125585 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 gctttggcagagaacagtgg 397 |||||||||||||||||||| Sbjct: 6022 gctttggcagagaacagtgg 6041
>gb|AC154878.7| Mus musculus chromosome 7, clone RP23-250P5, complete sequence Length = 180302 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 gccaatagctttggcagaga 390 |||||||||||||||||||| Sbjct: 159511 gccaatagctttggcagaga 159530
>emb|AL111885.1|CNS019O5 Botrytis cinerea strain T4 cDNA library Length = 756 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tgatttccttgcaagaagat 300 |||||||||||||||||||| Sbjct: 423 tgatttccttgcaagaagat 442
>emb|AL606971.22| Mouse DNA sequence from clone RP23-123I20 on chromosome 4, complete sequence Length = 91841 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tcacttgggaaggccatttg 217 |||||||||||||||||||| Sbjct: 61578 tcacttgggaaggccatttg 61597
>emb|AL590443.1|CNS07EGA chromosome III of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 194439 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 agaacagtggaaggtgcaag 407 |||||||||||||||||||| Sbjct: 92614 agaacagtggaaggtgcaag 92633 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,577,801 Number of Sequences: 3902068 Number of extensions: 3577801 Number of successful extensions: 72707 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 72536 Number of HSP's gapped (non-prelim): 172 length of query: 407 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 385 effective length of database: 17,147,199,772 effective search space: 6601671912220 effective search space used: 6601671912220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)