ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags37a05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0403D02, complete sequence Length = 138387 Score = 137 bits (69), Expect = 1e-29 Identities = 164/198 (82%), Gaps = 6/198 (3%) Strand = Plus / Minus Query: 9 ggcggcgtgtacgacgtgagcctggtcatgcggctcgtcagggtgttcgtgagctccgtc 68 ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 75640 ggcggcgtgtacgacgtgaacctggtcatgcggctggtcagggtgttcgtcggctccgag 75581 Query: 69 gaggaggctggctcgccgtcgtcgtcgcagaggatgaggaaggcggggaggctggtggac 128 |||||||| | || ||||||| |||||||||||||||| || |||||||| ||| Sbjct: 75580 gaggaggccgacttgccgtcg------cagaggatgaggaaggttggaaggctggtcgac 75527 Query: 129 aagtncctggcggagatctcgccggaccaggggctgcngttgtnccggttcctcgccgtn 188 |||| ||| | ||||||||||||||||| || ||| | ||| | |||||||||||| Sbjct: 75526 aagtacctcggtgagatctcgccggaccatggcctgagggtgtccaagttcctcgccgtc 75467 Query: 189 nccnagagcctgccggac 206 || |||||||||||||| Sbjct: 75466 gccgagagcctgccggac 75449
>ref|XM_474323.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1701 Score = 131 bits (66), Expect = 9e-28 Identities = 161/195 (82%), Gaps = 6/195 (3%) Strand = Plus / Plus Query: 12 ggcgtgtacgacgtgagcctggtcatgcggctcgtcagggtgttcgtgagctccgtcgag 71 |||||||||||||||| ||||||||||||||| |||||||||||||| |||||| ||| Sbjct: 994 ggcgtgtacgacgtgaacctggtcatgcggctggtcagggtgttcgtcggctccgaggag 1053 Query: 72 gaggctggctcgccgtcgtcgtcgcagaggatgaggaaggcggggaggctggtggacaag 131 ||||| | || ||||||| |||||||||||||||| || |||||||| |||||| Sbjct: 1054 gaggccgacttgccgtcg------cagaggatgaggaaggttggaaggctggtcgacaag 1107 Query: 132 tncctggcggagatctcgccggaccaggggctgcngttgtnccggttcctcgccgtnncc 191 | ||| | ||||||||||||||||| || ||| | ||| | |||||||||||| || Sbjct: 1108 tacctcggtgagatctcgccggaccatggcctgagggtgtccaagttcctcgccgtcgcc 1167 Query: 192 nagagcctgccggac 206 |||||||||||||| Sbjct: 1168 gagagcctgccggac 1182
>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05, complete sequence Length = 164943 Score = 131 bits (66), Expect = 9e-28 Identities = 161/195 (82%), Gaps = 6/195 (3%) Strand = Plus / Minus Query: 12 ggcgtgtacgacgtgagcctggtcatgcggctcgtcagggtgttcgtgagctccgtcgag 71 |||||||||||||||| ||||||||||||||| |||||||||||||| |||||| ||| Sbjct: 71804 ggcgtgtacgacgtgaacctggtcatgcggctggtcagggtgttcgtcggctccgaggag 71745 Query: 72 gaggctggctcgccgtcgtcgtcgcagaggatgaggaaggcggggaggctggtggacaag 131 ||||| | || ||||||| |||||||||||||||| || |||||||| |||||| Sbjct: 71744 gaggccgacttgccgtcg------cagaggatgaggaaggttggaaggctggtcgacaag 71691 Query: 132 tncctggcggagatctcgccggaccaggggctgcngttgtnccggttcctcgccgtnncc 191 | ||| | ||||||||||||||||| || ||| | ||| | |||||||||||| || Sbjct: 71690 tacctcggtgagatctcgccggaccatggcctgagggtgtccaagttcctcgccgtcgcc 71631 Query: 192 nagagcctgccggac 206 |||||||||||||| Sbjct: 71630 gagagcctgccggac 71616
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 131 bits (66), Expect = 9e-28 Identities = 161/195 (82%), Gaps = 6/195 (3%) Strand = Plus / Minus Query: 12 ggcgtgtacgacgtgagcctggtcatgcggctcgtcagggtgttcgtgagctccgtcgag 71 |||||||||||||||| ||||||||||||||| |||||||||||||| |||||| ||| Sbjct: 34454319 ggcgtgtacgacgtgaacctggtcatgcggctggtcagggtgttcgtcggctccgaggag 34454260 Query: 72 gaggctggctcgccgtcgtcgtcgcagaggatgaggaaggcggggaggctggtggacaag 131 ||||| | || ||||||| |||||||||||||||| || |||||||| |||||| Sbjct: 34454259 gaggccgacttgccgtcg------cagaggatgaggaaggttggaaggctggtcgacaag 34454206 Query: 132 tncctggcggagatctcgccggaccaggggctgcngttgtnccggttcctcgccgtnncc 191 | ||| | ||||||||||||||||| || ||| | ||| | |||||||||||| || Sbjct: 34454205 tacctcggtgagatctcgccggaccatggcctgagggtgtccaagttcctcgccgtcgcc 34454146 Query: 192 nagagcctgccggac 206 |||||||||||||| Sbjct: 34454145 gagagcctgccggac 34454131
>dbj|AK119773.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-F05, full insert sequence Length = 1898 Score = 131 bits (66), Expect = 9e-28 Identities = 161/195 (82%), Gaps = 6/195 (3%) Strand = Plus / Plus Query: 12 ggcgtgtacgacgtgagcctggtcatgcggctcgtcagggtgttcgtgagctccgtcgag 71 |||||||||||||||| ||||||||||||||| |||||||||||||| |||||| ||| Sbjct: 1035 ggcgtgtacgacgtgaacctggtcatgcggctggtcagggtgttcgtcggctccgaggag 1094 Query: 72 gaggctggctcgccgtcgtcgtcgcagaggatgaggaaggcggggaggctggtggacaag 131 ||||| | || ||||||| |||||||||||||||| || |||||||| |||||| Sbjct: 1095 gaggccgacttgccgtcg------cagaggatgaggaaggttggaaggctggtcgacaag 1148 Query: 132 tncctggcggagatctcgccggaccaggggctgcngttgtnccggttcctcgccgtnncc 191 | ||| | ||||||||||||||||| || ||| | ||| | |||||||||||| || Sbjct: 1149 tacctcggtgagatctcgccggaccatggcctgagggtgtccaagttcctcgccgtcgcc 1208 Query: 192 nagagcctgccggac 206 |||||||||||||| Sbjct: 1209 gagagcctgccggac 1223
>dbj|AK059048.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D12, full insert sequence Length = 1174 Score = 131 bits (66), Expect = 9e-28 Identities = 161/195 (82%), Gaps = 6/195 (3%) Strand = Plus / Plus Query: 12 ggcgtgtacgacgtgagcctggtcatgcggctcgtcagggtgttcgtgagctccgtcgag 71 |||||||||||||||| ||||||||||||||| |||||||||||||| |||||| ||| Sbjct: 323 ggcgtgtacgacgtgaacctggtcatgcggctggtcagggtgttcgtcggctccgaggag 382 Query: 72 gaggctggctcgccgtcgtcgtcgcagaggatgaggaaggcggggaggctggtggacaag 131 ||||| | || ||||||| |||||||||||||||| || |||||||| |||||| Sbjct: 383 gaggccgacttgccgtcg------cagaggatgaggaaggttggaaggctggtcgacaag 436 Query: 132 tncctggcggagatctcgccggaccaggggctgcngttgtnccggttcctcgccgtnncc 191 | ||| | ||||||||||||||||| || ||| | ||| | |||||||||||| || Sbjct: 437 tacctcggtgagatctcgccggaccatggcctgagggtgtccaagttcctcgccgtcgcc 496 Query: 192 nagagcctgccggac 206 |||||||||||||| Sbjct: 497 gagagcctgccggac 511
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 cgcagaggatgaggaaggcgg 114 ||||||||||||||||||||| Sbjct: 3179298 cgcagaggatgaggaaggcgg 3179278
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 aggctggctcgccgtcgtcgt 93 ||||||||||||||||||||| Sbjct: 18517345 aggctggctcgccgtcgtcgt 18517365
>dbj|AK073885.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073G16, full insert sequence Length = 976 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 aggctggctcgccgtcgtcgt 93 ||||||||||||||||||||| Sbjct: 597 aggctggctcgccgtcgtcgt 617
>dbj|AK071106.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078N19, full insert sequence Length = 712 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 aggctggctcgccgtcgtcgt 93 ||||||||||||||||||||| Sbjct: 300 aggctggctcgccgtcgtcgt 320
>gb|AC122266.2| Mus musculus BAC clone RP23-213K18 from 8, complete sequence Length = 195246 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 aggaaggcggggaggctggtggac 128 ||||||||||||||| |||||||| Sbjct: 64233 aggaaggcggggagggtggtggac 64210
>gb|AC142329.1| Pan troglodytes BAC clone RP43-25D8 from 11, complete sequence Length = 188643 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ggatgaggaaggcggggagg 119 |||||||||||||||||||| Sbjct: 162019 ggatgaggaaggcggggagg 162038
>gb|AC158362.5| Mus musculus BAC clone RP23-214K5 from chromosome 8, complete sequence Length = 201185 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 aggaaggcggggaggctggtggac 128 ||||||||||||||| |||||||| Sbjct: 185876 aggaaggcggggagggtggtggac 185899
>ref|XM_787536.1| PREDICTED: Strongylocentrotus purpuratus similar to Retrovirus-related Pol polyprotein from transposon 297 (LOC587827), mRNA Length = 2904 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gtcgtcgcagaggatgagga 108 |||||||||||||||||||| Sbjct: 1411 gtcgtcgcagaggatgagga 1430
>emb|AJ609490.1| Rigidoporus microporus mRNA for laccase (lcc1 gene) Length = 1899 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 ctcgccgtcgtcgtcgcagaggat 103 |||||||||||| ||||||||||| Sbjct: 1495 ctcgccgtcgtcttcgcagaggat 1518
>dbj|AK190595.1| Mus musculus cDNA, clone:Y1G0103D20, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034591, based on BLAT search Length = 162 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ctccgtcgaggaggctggct 81 |||||||||||||||||||| Sbjct: 153 ctccgtcgaggaggctggct 134
>emb|Z72503.1|CEC26C6 Caenorhabditis elegans Cosmid C26C6, complete sequence Length = 42472 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 gctcgccgtcgtcgtcgcag 98 |||||||||||||||||||| Sbjct: 24995 gctcgccgtcgtcgtcgcag 25014 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,052,751 Number of Sequences: 3902068 Number of extensions: 1052751 Number of successful extensions: 101668 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101351 Number of HSP's gapped (non-prelim): 311 length of query: 206 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 184 effective length of database: 17,147,199,772 effective search space: 3155084758048 effective search space used: 3155084758048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
