>gb|AY123416.1| Triticum aestivum putative cytochrome c oxidase subunit mRNA,
           complete cds
          Length = 689

 Score =  167 bits (84), Expect = 1e-38
 Identities = 96/100 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcaaggtcccgacgctggccgaggaatattcacttccacccaaggaggtccctgtgga 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 24  aggcaaggtcccgacgctggccgaggaatattcactcccacccaaggaggtccctgtgga 83

                                                   
Query: 61  aaaaccagctgaggagaaatctactacgagcactgtggcc 100
           |||||||||||||||||||||| |||||| ||||| ||||
Sbjct: 84  aaaaccagctgaggagaaatctgctacgatcactgaggcc 123

>gb|AY103760.1| Zea mays PCO110275 mRNA sequence
          Length = 2705

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                    
Query: 23   gaggaatattcacttccacccaaggaggtccctgtggaaaaaccagctgaggagaa 78
            ||||||||||||||||||||  |||| || || ||||||||  |||||||||||||
Sbjct: 1989 gaggaatattcacttccaccacaggaagttccagtggaaaaggcagctgaggagaa 2044

>gb|BT017421.1| Zea mays clone EL01N0402E11.c mRNA sequence
          Length = 832

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 20  gccgaggaatattcacttccacccaaggaggtccctgtggaaaaaccagctgaggagaa 78
           |||||||| ||||||||||||||  |||| || || ||||||||  |||||||||||||
Sbjct: 92  gccgaggagtattcacttccaccacaggaagttccagtggaaaaggcagctgaggagaa 150

>ref|NM_189870.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 525

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 94  tgtggccgaagttgttcctcagaaggatactgaaac 129
           |||||| |||||||||||| |||| ||| |||||||
Sbjct: 111 tgtggctgaagttgttcctgagaaagatgctgaaac 146



 Score = 40.1 bits (20), Expect = 1.8
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 20 gccgaggaatattcacttccacccaaggaggtccctgtggaaaa 63
          ||||||||| |  |||| |||||| | |||||||||||||||||
Sbjct: 37 gccgaggaacacacactcccaccccacgaggtccctgtggaaaa 80

>ref|XM_470804.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 875

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 4   caaggtcccgacgctggccgaggaatattcacttcc 39
           ||||| |||| |||| ||||||||||| ||||||||
Sbjct: 79  caaggccccgtcgctcgccgaggaatactcacttcc 114

>emb|CR388090.9| Zebrafish DNA sequence from clone DKEY-267J14 in linkage group 8,
             complete sequence
          Length = 116021

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 42    ccaaggaggtccctgtggaaaaac 65
             ||||||||||| ||||||||||||
Sbjct: 21378 ccaaggaggtcactgtggaaaaac 21355

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 3       gcaaggtcccgacgctggcc 22
               ||||||||||||||||||||
Sbjct: 2315405 gcaaggtcccgacgctggcc 2315386

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 94       tgtggccgaagttgttcctcagaaggatactgaaac 129
                |||||| |||||||||||| |||| ||| |||||||
Sbjct: 25639447 tgtggctgaagttgttcctgagaaagatgctgaaac 25639412



 Score = 38.2 bits (19), Expect = 7.2
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                               
Query: 33       cacttccacccaaggaggtccctgtggaaaa 63
                |||| |||||| | |||||||||||||||||
Sbjct: 25639508 cactcccaccccacgaggtccctgtggaaaa 25639478

>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0594D10
          Length = 143200

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 94    tgtggccgaagttgttcctcagaaggatactgaaac 129
             |||||| |||||||||||| |||| ||| |||||||
Sbjct: 93420 tgtggctgaagttgttcctgagaaagatgctgaaac 93385



 Score = 38.2 bits (19), Expect = 7.2
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                            
Query: 33    cacttccacccaaggaggtccctgtggaaaa 63
             |||| |||||| | |||||||||||||||||
Sbjct: 93481 cactcccaccccacgaggtccctgtggaaaa 93451

>dbj|AK120174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033A17, full
           insert sequence
          Length = 887

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 4   caaggtcccgacgctggccgaggaatattcacttcc 39
           ||||| |||| |||| ||||||||||| ||||||||
Sbjct: 111 caaggccccgtcgctcgccgaggaatactcacttcc 146

>gb|AC133209.4| Mus musculus BAC clone RP23-21E5 from chromosome 3, complete sequence
          Length = 164837

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 116  aaggatactgaaacctcacc 135
            ||||||||||||||||||||
Sbjct: 7655 aaggatactgaaacctcacc 7636

>dbj|AB025187.1| Oryza sativa (japonica cultivar-group) mRNA for cytochrome c
           oxidase subunit 6b-1, complete cds
          Length = 951

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 4   caaggtcccgacgctggccgaggaatattcacttcc 39
           ||||| |||| |||| ||||||||||| ||||||||
Sbjct: 121 caaggccccgtcgctcgccgaggaatactcacttcc 156

>gb|AC012297.12| Mus musculus chromosome 7, clone RP23-78H9, complete sequence
          Length = 180139

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 126   aaacctcaccagctgatga 144
             |||||||||||||||||||
Sbjct: 78919 aaacctcaccagctgatga 78901

>gb|AC125082.3| Mus musculus BAC clone RP24-90M24 from chromosome 10, complete sequence
          Length = 226256

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 40    acccaaggaggtccctgtggaaa 62
             |||||||||||||||||| ||||
Sbjct: 52712 acccaaggaggtccctgttgaaa 52690

>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16
          Length = 349981

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 5      aaggtcccgacgctggccg 23
              |||||||||||||||||||
Sbjct: 146708 aaggtcccgacgctggccg 146726

>dbj|AK084155.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length
           enriched library, clone:D230004D23
           product:unclassifiable, full insert sequence
          Length = 1543

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 126 aaacctcaccagctgatga 144
           |||||||||||||||||||
Sbjct: 613 aaacctcaccagctgatga 631

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 64       accagctgaggagaaatct 82
                |||||||||||||||||||
Sbjct: 33186554 accagctgaggagaaatct 33186572

>emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete
             sequence
          Length = 118971

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 64    accagctgaggagaaatct 82
             |||||||||||||||||||
Sbjct: 77032 accagctgaggagaaatct 77050

>emb|CT025547.17| Mouse DNA sequence from clone RP24-111B7 on chromosome 14, complete
             sequence
          Length = 178908

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 103   agttgttcctcagaaggat 121
             |||||||||||||||||||
Sbjct: 48506 agttgttcctcagaaggat 48488

>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02,
             complete sequence
          Length = 165745

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 64    accagctgaggagaaatct 82
             |||||||||||||||||||
Sbjct: 69203 accagctgaggagaaatct 69221


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,314,379
Number of Sequences: 3902068
Number of extensions: 1314379
Number of successful extensions: 84065
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83937
Number of HSP's gapped (non-prelim): 128
length of query: 149
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 128
effective length of database: 17,151,101,840
effective search space: 2195341035520
effective search space used: 2195341035520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)