Clone Information

BLAST Search Result

Clone Name	bags36l03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chro...	155	1e-37
2	CHMP5_RAT (Q4QQV8) Charged multivesicular body protein 5 (Chroma...	154	2e-37
3	CHMP5_MOUSE (Q9D7S9) Charged multivesicular body protein 5 (Chro...	154	2e-37
4	CHMP5_XENTR (Q5FW29) Charged multivesicular body protein 5 (Chro...	153	5e-37
5	CHMP5_PONPY (Q5RBR3) Charged multivesicular body protein 5 (Chro...	152	8e-37
6	CHMP5_HUMAN (Q9NZZ3) Charged multivesicular body protein 5 (Chro...	152	8e-37
7	CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chro...	150	3e-36
8	VPS60_YEAST (Q03390) Vacuolar protein sorting-associated protein...	89	1e-17
9	SNF7_KLULA (Q6CJL0) Vacuolar sorting protein SNF7 (Vacuolar prot...	80	7e-15
10	SNF7_CANGA (Q6FW96) Vacuolar sorting protein SNF7 (Vacuolar prot...	70	5e-12
11	SNF7_CRYNE (Q5KL29) Vacuolar sorting protein SNF7 (Vacuolar prot...	67	4e-11
12	SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar prot...	65	2e-10
13	CHM4A_HUMAN (Q9BY43) Charged multivesicular body protein 4a (Chr...	62	1e-09
14	SNF7_ASHGO (Q753W3) Vacuolar sorting protein SNF7 (Vacuolar prot...	60	5e-09
15	SNF7_DEBHA (Q6BSH2) Vacuolar sorting protein SNF7 (Vacuolar prot...	59	1e-08
16	CHM4C_HUMAN (Q96CF2) Charged multivesicular body protein 4c (Chr...	58	2e-08
17	CHM4C_BRARE (Q6IQ73) Charged multivesicular body protein 4c (Chr...	58	2e-08
18	SNF7_SCHPO (Q9P7F7) Vacuolar sorting protein snf7 (Vacuolar prot...	58	2e-08
19	CHM4B_XENLA (Q5XGW6) Charged multivesicular body protein 4b (Chr...	58	3e-08
20	SNF7_YARLI (Q6CBS3) Vacuolar sorting protein SNF7 (Vacuolar prot...	58	3e-08
21	CHM4B_XENTR (Q6GL11) Charged multivesicular body protein 4b (Chr...	57	4e-08
22	VPS20_YEAST (Q04272) Vacuolar protein sorting protein 20 (Amino ...	56	8e-08
23	CHMP7_HUMAN (Q8WUX9) Protein CHMP7	55	2e-07
24	CHMP7_MOUSE (Q8R1T1) Protein CHMP7	54	4e-07
25	CHM4B_CHICK (Q5ZHP5) Charged multivesicular body protein 4b (Chr...	54	5e-07
26	CHMP7_PONPY (Q5R812) Protein CHMP7	54	5e-07
27	CHM4B_MOUSE (Q9D8B3) Charged multivesicular body protein 4b (Chr...	53	7e-07
28	CHM4B_HUMAN (Q9H444) Charged multivesicular body protein 4b (Chr...	53	7e-07
29	SNF7_YEAST (P39929) Vacuolar sorting protein SNF7 (DOA4-independ...	53	7e-07
30	CHMP7_CHICK (Q5ZJB7) Protein CHMP7	52	2e-06
31	CG301_HUMAN (P59074) Protein CGI-301	49	1e-05
32	SMC_METJA (Q59037) Chromosome partition protein smc homolog	39	0.017
33	NU159_YEAST (P40477) Nucleoporin NUP159 (Nuclear pore protein NU...	37	0.065
34	DNAK_WOLTR (Q5GSE1) Chaperone protein dnaK (Heat shock protein 7...	37	0.065
35	LRC45_MOUSE (Q8CIM1) Leucine-rich repeat-containing protein 45	35	0.25
36	SYS_VIBPA (Q87QP1) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--...	34	0.42
37	YJE9_YEAST (P47048) Hypothetical 52.8 kDa protein in MTR4-GYP6 i...	33	0.55
38	DNAK_WOLPM (Q73GL7) Chaperone protein dnaK (Heat shock protein 7...	33	0.55
39	MLP2_YEAST (P40457) Protein MLP2 (Myosin-like protein 2)	33	0.72
40	MDN1_YEAST (Q12019) Midasin (MIDAS-containing protein)	33	0.72
41	RPOE_BACSU (P12464) DNA-directed RNA polymerase delta subunit (R...	32	1.2
42	MYH3_CHICK (P02565) Myosin heavy chain, fast skeletal muscle, em...	32	1.2
43	CUL6_CAEEL (Q21346) Cullin-6	32	1.6
44	CWLO_BACSU (P40767) Peptidoglycan DL-endopeptidase cwlO precurso...	32	2.1
45	SQT1_YEAST (P35184) Ribosome assembly protein SQT1	32	2.1
46	DYNA_CHICK (P35458) Dynactin-1 (150 kDa dynein-associated polype...	32	2.1
47	ECX1_METMA (Q8PTT8) Probable exosome complex exonuclease 1 (EC 3...	32	2.1
48	TIG_STRMU (Q8CWZ6) Trigger factor (TF)	31	2.7
49	APEA_DICDI (P51173) DNA-(apurinic or apyrimidinic site) lyase (E...	31	2.7
50	RPOB_THETN (Q8R7U6) DNA-directed RNA polymerase beta chain (EC 2...	31	2.7
51	DNAK_EHRRW (Q5HAY1) Chaperone protein dnaK (Heat shock protein 7...	31	3.6
52	DNAK_EHRRG (Q5FFM4) Chaperone protein dnaK (Heat shock protein 7...	31	3.6
53	OMPA_THEMA (Q01969) Outer membrane protein alpha precursor	31	3.6
54	SPB1_EMENI (Q5BH88) AdoMet-dependent rRNA methyltransferase spb1...	31	3.6
55	ZN198_MOUSE (Q9CU65) Zinc finger protein 198 (Fragment)	30	4.6
56	TRI37_HUMAN (O94972) Tripartite motif protein 37 (Mulibrey nanis...	30	4.6
57	TIG_BACSU (P80698) Trigger factor (TF) (Vegetative protein 2) (V...	30	4.6
58	TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-d...	30	4.6
59	HDA3_YEAST (Q06623) HDA1 complex subunit 3 (Histone deacetylase ...	30	4.6
60	KIF5C_HUMAN (O60282) Kinesin heavy chain isoform 5C (Kinesin hea...	30	6.1
61	DPO5_YEAST (P39985) DNA polymerase V (EC 2.7.7.7) (POL V)	30	6.1
62	CTGE5_MOUSE (Q8R311) Cutaneous T-cell lymphoma-associated antige...	30	6.1
63	EZRA_BACSU (O34894) Septation ring formation regulator ezrA	30	7.9
64	RPOB_DEHSC (Q3ZX01) DNA-directed RNA polymerase beta chain (EC 2...	30	7.9
65	SYS_LACJO (Q74HZ5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--...	30	7.9
66	UTRO_HUMAN (P46939) Utrophin (Dystrophin-related protein 1) (DRP...	30	7.9
67	GVPD2_HALSA (Q9HHT2) Protein gvpD 2	30	7.9
68	DBP9_SCHPO (O60080) ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)	30	7.9
69	SYT_LEIXX (Q6AFC3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon...	30	7.9
70	DNAJM_MYCPN (P75354) DnaJ-like protein MG200 homolog	30	7.9

>CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 220

 Score =  155 bits (391), Expect = 1e-37
 Identities = 83/196 (42%), Positives = 122/196 (62%), Gaps = 6/196 (3%)
 Frame = +1

Query: 1   KLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFAS 180
           +LDAEL +YK+Q+KK R GP++  VK +AMR+LKQ++MYEGQRD L  Q++N++Q  +  
Sbjct: 37  RLDAELMKYKDQMKKMRDGPSKNMVKQKAMRVLKQKRMYEGQRDQLMQQSFNMEQANYTI 96

Query: 181 EGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVP 360
           + +KD + T+ AMK   KE+K   K V+I+ I+ +QD++ D+M+ +NE+QE L RSY  P
Sbjct: 97  QTLKDTKTTVEAMKIGAKEMKKAYKNVKIDQIEDLQDQLEDMMEDANEVQEALSRSYGTP 156

Query: 361 DDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQ 540
            +IDE++L  ELDAL  ++          L  D  + LD   + PA P G    P +R  
Sbjct: 157 -EIDEDDLEAELDALGDEL----------LLDDDNSYLDEASSAPAIPEG---APGDRTT 202

Query: 541 E------DEMGLPTVP 570
                  DE GLP +P
Sbjct: 203 NRDGVLVDEFGLPQIP 218

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>CHMP5_RAT (Q4QQV8) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  154 bits (390), Expect = 2e-37
 Identities = 83/195 (42%), Positives = 124/195 (63%), Gaps = 5/195 (2%)
 Frame = +1

Query: 1   KLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFAS 180
           +LDAEL +YK+QIKK R GPA+  VK +A+R+LKQ++MYE QRD L  Q++N++Q  +  
Sbjct: 37  RLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTI 96

Query: 181 EGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVP 360
           + +KD + T+ AMK   KE+K   K V+I+ I+ +QD++ D+M+ +NEIQE LGRSY  P
Sbjct: 97  QSLKDTKTTVDAMKLGVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP 156

Query: 361 DDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQ 540
            ++DE++L  ELDAL  ++          L  +  + LD   + PA P G   VP + + 
Sbjct: 157 -ELDEDDLEAELDALGDEL----------LADEDSSYLDEAASAPAIPEG---VPTDTKN 202

Query: 541 E-----DEMGLPTVP 570
           +     DE GLP +P
Sbjct: 203 KDGVLVDEFGLPQIP 217

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>CHMP5_MOUSE (Q9D7S9) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5) (SNF7 domain-containing protein 2)
          Length = 219

 Score =  154 bits (390), Expect = 2e-37
 Identities = 83/195 (42%), Positives = 124/195 (63%), Gaps = 5/195 (2%)
 Frame = +1

Query: 1   KLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFAS 180
           +LDAEL +YK+QIKK R GPA+  VK +A+R+LKQ++MYE QRD L  Q++N++Q  +  
Sbjct: 37  RLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTI 96

Query: 181 EGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVP 360
           + +KD + T+ AMK   KE+K   K V+I+ I+ +QD++ D+M+ +NEIQE LGRSY  P
Sbjct: 97  QSLKDTKTTVDAMKLGVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP 156

Query: 361 DDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQ 540
            ++DE++L  ELDAL  ++          L  +  + LD   + PA P G   VP + + 
Sbjct: 157 -ELDEDDLEAELDALGDEL----------LADEDSSYLDEAASAPAIPEG---VPTDTKN 202

Query: 541 E-----DEMGLPTVP 570
           +     DE GLP +P
Sbjct: 203 KDGVLVDEFGLPQIP 217

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>CHMP5_XENTR (Q5FW29) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  153 bits (386), Expect = 5e-37
 Identities = 83/195 (42%), Positives = 124/195 (63%), Gaps = 5/195 (2%)
 Frame = +1

Query: 1   KLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFAS 180
           +LDAEL +YK+Q+KK R GP++  VK +A+R+LKQ++MYE QRD L  Q++N++Q  +A 
Sbjct: 37  RLDAELVKYKDQMKKMREGPSKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAI 96

Query: 181 EGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVP 360
           + +KD + T+ AMK   KE+K   K V+I+ I+ +QD++ D+M+ +NEIQE L RSY  P
Sbjct: 97  QSLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYGTP 156

Query: 361 DDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQ 540
            +IDE++L  ELDAL  ++          L  D  + LD   + PA P G   VP + + 
Sbjct: 157 -EIDEDDLEAELDALGDEL----------LLDDDTSYLDEAASAPAIPEG---VPNDSKN 202

Query: 541 E-----DEMGLPTVP 570
           +     DE GLP +P
Sbjct: 203 KDGVLVDEFGLPQIP 217

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>CHMP5_PONPY (Q5RBR3) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  152 bits (384), Expect = 8e-37
 Identities = 82/195 (42%), Positives = 123/195 (63%), Gaps = 5/195 (2%)
 Frame = +1

Query: 1   KLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFAS 180
           +LDAEL +YK+QIKK R GPA+  VK +A+R+LKQ++MYE QRD L  Q++N++Q  +  
Sbjct: 37  RLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTI 96

Query: 181 EGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVP 360
           + +KD + T+ AMK   KE+K   K V+I+ I+ +QD++ D+M+ +NEIQE L RSY  P
Sbjct: 97  QSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP 156

Query: 361 DDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQ 540
            ++DE++L  ELDAL  ++          L  +  + LD   + PA P G   VP + + 
Sbjct: 157 -ELDEDDLEAELDALGDEL----------LADEDSSYLDEAASAPAIPEG---VPTDTKN 202

Query: 541 E-----DEMGLPTVP 570
           +     DE GLP +P
Sbjct: 203 KDGVLVDEFGLPQIP 217

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>CHMP5_HUMAN (Q9NZZ3) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5) (Vacuolar protein sorting 60) (Vps60)
           (hVps60) (SNF7 domain-containing protein 2)
          Length = 219

 Score =  152 bits (384), Expect = 8e-37
 Identities = 82/195 (42%), Positives = 123/195 (63%), Gaps = 5/195 (2%)
 Frame = +1

Query: 1   KLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFAS 180
           +LDAEL +YK+QIKK R GPA+  VK +A+R+LKQ++MYE QRD L  Q++N++Q  +  
Sbjct: 37  RLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTI 96

Query: 181 EGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVP 360
           + +KD + T+ AMK   KE+K   K V+I+ I+ +QD++ D+M+ +NEIQE L RSY  P
Sbjct: 97  QSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP 156

Query: 361 DDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQ 540
            ++DE++L  ELDAL  ++          L  +  + LD   + PA P G   VP + + 
Sbjct: 157 -ELDEDDLEAELDALGDEL----------LADEDSSYLDEAASAPAIPEG---VPTDTKN 202

Query: 541 E-----DEMGLPTVP 570
           +     DE GLP +P
Sbjct: 203 KDGVLVDEFGLPQIP 217

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>CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  150 bits (379), Expect = 3e-36
 Identities = 82/195 (42%), Positives = 123/195 (63%), Gaps = 5/195 (2%)
 Frame = +1

Query: 1   KLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFAS 180
           +LDAEL +YK+Q+KK R GP++  VK +A+R+LKQ++MYE QRD L  Q++N++Q  +  
Sbjct: 37  RLDAELIKYKDQMKKMREGPSKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTI 96

Query: 181 EGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVP 360
           + +KD + T+ AMK   KE+K   K V+I+ I+ +QD++ D+M+ +NEIQE L RSY  P
Sbjct: 97  QTLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYGTP 156

Query: 361 DDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQ 540
            +IDE++L  ELDAL  ++          L  D  + LD   + PA P G   VP + + 
Sbjct: 157 -EIDEDDLEAELDALGDEL----------LLDDDTSYLDEAASAPAIPEG---VPNDSKN 202

Query: 541 E-----DEMGLPTVP 570
           +     DE GLP +P
Sbjct: 203 KDGVLVDEFGLPQIP 217

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>VPS60_YEAST (Q03390) Vacuolar protein sorting-associated protein VPS60|
          Length = 262

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 57/184 (30%), Positives = 98/184 (53%), Gaps = 23/184 (12%)
 Frame = +1

Query: 1   KLDAELARYKEQIKKT-----RPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQ 165
           +LD ++A+   Q++       R    Q +++ +A++IL +RK  E  +D L +Q++++ Q
Sbjct: 70  QLDTQIAQLNFQLQNIQKNLQRSNNKQPSLRKQALKILNKRKQLENMKDSLDSQSWSMTQ 129

Query: 166 VAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGR 345
               ++ +++   T+ A+K  N  +K     + I+ +  MQDEM+DL++  +E+QE L  
Sbjct: 130 AQLTNDNLQNTMITINALKQTNNAMKAQYGKINIDKLQDMQDEMLDLIEQGDELQEVLAM 189

Query: 346 SYNVP--DDIDEEELMGELDALEADMDFE--------SNSVPSYLQP--------DKETD 471
           + N    DDI + EL  ELDAL A  DF          N +PSYL          D+E +
Sbjct: 190 NNNSGELDDISDAELDAELDAL-AQEDFTLPTSENSLGNDMPSYLLGANAPPAFIDEEPN 248

Query: 472 LDSE 483
           LD+E
Sbjct: 249 LDTE 252

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>SNF7_KLULA (Q6CJL0) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 232

 Score = 79.7 bits (195), Expect = 7e-15
 Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 1/184 (0%)
 Frame = +1

Query: 1   KLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFAS 180
           K  A L    +Q ++      Q   K  A   LK++K+YE Q D L +Q  +LDQ  ++ 
Sbjct: 32  KKQAHLQTQIDQQQQLAKKSLQSGNKNNAKTYLKKKKLYESQLDKLQSQIDSLDQQLYSI 91

Query: 181 EGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVP 360
           E      +T+ AMK     +K + K + ++ +D   DE+ + ++++ EI E + +   + 
Sbjct: 92  ENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAISKPLILQ 151

Query: 361 DDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVP-ANRQ 537
           D++DE+EL  EL+ LE++   + +  P   Q  ++  +D    LP+ P    + P  N  
Sbjct: 152 DELDEDELDQELELLESENLQKEHIAPVPQQQIQQPSID----LPSVPDVKLSTPELNSA 207

Query: 538 QEDE 549
           Q DE
Sbjct: 208 QADE 211

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>SNF7_CANGA (Q6FW96) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 228

 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 1/159 (0%)
 Frame = +1

Query: 76  KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 255
           K  A   LK++K+YEGQ   L +Q  +L+Q  F+ E      +TM AMK   K +K +  
Sbjct: 58  KTMAKNALKKKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQGAKAMKSIHS 117

Query: 256 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRS-YNVPDDIDEEELMGELDALEADMDFESN 432
            + I+ +D   DE+ + +++  EI + + R  Y   ++IDE+EL  ELD L  + + +  
Sbjct: 118 GLDIDRVDETMDEIREQVELGEEISDAISRPLYTGANEIDEDELDEELDMLAQETEPQVA 177

Query: 433 SVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDE 549
           +    L   K+    S  N+P      +      ++EDE
Sbjct: 178 TKEQALPESKQA--LSMPNIPNTKIDESKTKIEEEEEDE 214

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>SNF7_CRYNE (Q5KL29) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 220

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 8/183 (4%)
 Frame = +1

Query: 22  RYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQ 201
           + +E++KK +        K  AM  L+Q+K +E + D +      L+    A E      
Sbjct: 42  KIEEEMKKAKANATGN--KRLAMAALRQKKAHENELDRIAGTRLTLETQVNAIESANLNA 99

Query: 202 QTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEE 381
           +TM AMK     LKG+   +  E +D+  D++ + MD++N+I + +     +   +DE++
Sbjct: 100 ETMVAMKKGADALKGIHSNLTAEGVDATMDKIREQMDLTNDISDAISNPVGMGIVLDEDD 159

Query: 382 LMGELDALEA----DMDFESNSVPSYLQPDKETDLDSELNLPAAP----SGHAAVPANRQ 537
           L  EL+ALE     D    ++ VPS+              LPA+P    +G AAV  +  
Sbjct: 160 LKEELEALEQEQLDDRLAGADRVPSH--------------LPASPVGQTTGRAAVEEDED 205

Query: 538 QED 546
            E+
Sbjct: 206 DEE 208

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>SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 45/158 (28%), Positives = 73/158 (46%)
 Frame = +1

Query: 85  AMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVR 264
           A   LK++K YE     + NQ   L+    + EG     +TM AMK   K +K +     
Sbjct: 61  AKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQGAKAMKQIHGEYD 120

Query: 265 IEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPS 444
           ++ ++   DE+ + +++++EI E + R     + +DE+EL  EL  LEA+   +      
Sbjct: 121 VDKVEDTMDEIREQVELADEISEAISRPVG-NEFVDEDELDEELKELEAEAKEQEQEHRV 179

Query: 445 YLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDEMGL 558
             Q  K   +  E  LP  PS +   P   + EDE  L
Sbjct: 180 PAQKAKPQPVSREEELPQFPSVNKKAPVVEEDEDEEAL 217

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>CHM4A_HUMAN (Q9BY43) Charged multivesicular body protein 4a|
           (Chromatin-modifying protein 4a) (CHMP4a) (Vacuolar
           protein sorting 7-1) (SNF7-1) (hSnf-1) (SNF7 homolog
           associated with Alix-2)
          Length = 222

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
 Frame = +1

Query: 76  KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQ---QTMTAMKAANKELKG 246
           K  A++ L+++K +E Q   L      L  + F  E I++A    + +  M+ A + +K 
Sbjct: 59  KRAALQALRRKKRFEQQ---LAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKK 115

Query: 247 MMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFE 426
             + + I+ +D +  ++ +  +V+ +I + + R     DD+DE+EL+ EL+ LE +    
Sbjct: 116 AYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMGFGDDVDEDELLEELEELEQE---- 171

Query: 427 SNSVPSYLQPDKETDLDSELNLPAAPSGH-AAVPANRQQEDEMGL 558
              +   L    + + +  + LP+ PS H  A PA +  EDE  L
Sbjct: 172 --ELAQELLNVGDKEEEPSVKLPSVPSTHLPAGPAPKVDEDEEAL 214

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>SNF7_ASHGO (Q753W3) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 237

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
 Frame = +1

Query: 76  KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 255
           K  A   LK++K++E Q   +  Q  +L+Q  ++ E      +TM AMK     +K + +
Sbjct: 59  KNMAKAALKRKKVFESQLLKIDKQVDSLEQQLYSIENANLNLETMKAMKQGASAMKHIHE 118

Query: 256 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRS-YNVPDDIDEEELMGELDALEADMDFESN 432
            + +E +D   DE+ + +++  EI E + R  Y   ++IDE+EL  ELD L  +      
Sbjct: 119 GLDVERVDETMDEIREQVELGEEISEAISRPLYTGVNEIDEDELDEELDMLAQEEVARKV 178

Query: 433 SVPSYLQPDKETDLDSELNLPAAPS--------GHAAVPANRQQEDE 549
             P    P       ++++LP+ PS        G        Q+EDE
Sbjct: 179 MEPGAAVPAAAP--ATKVSLPSVPSSDMPQQDRGQPVTLGMDQEEDE 223

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>SNF7_DEBHA (Q6BSH2) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 40/158 (25%), Positives = 76/158 (48%)
 Frame = +1

Query: 76  KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 255
           KA A   LK++K YE     + NQ  +L+    + EG     +TM AMK   + +K +  
Sbjct: 57  KALAKNALKRKKGYEANLMKIENQIDSLETQLTSIEGANLNLETMKAMKQGAQAMKQIHG 116

Query: 256 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNS 435
              ++ +++  D++ + +++++EI E + R     + +DE+EL  EL  L+ +       
Sbjct: 117 EYDVDKVENTMDDIREQVELADEISEAISRPVGT-EFVDEDELDEELAMLQEEEKEHKQQ 175

Query: 436 VPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDE 549
            P+   P  +     E  +P  P+ +   PA   ++DE
Sbjct: 176 TPAQKAPVAKVSAPEE-EMPDFPTVNKNKPAASTEDDE 212

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>CHM4C_HUMAN (Q96CF2) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c) (Vacuolar
           protein sorting 7-3) (SNF7-3) (hSnf7-3) (SNF7 homolog
           associated with Alix 3)
          Length = 233

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 11/169 (6%)
 Frame = +1

Query: 76  KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 255
           K  A++ LK++K +E Q   +      ++    A E      + +  M  A K +K + +
Sbjct: 62  KRAALQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHE 121

Query: 256 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEAD------- 414
            + +  ID +  E+ +  D++ EI E   +     DD DE+ELM EL+ LE +       
Sbjct: 122 NMDLNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMT 181

Query: 415 ----MDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDE 549
                +  S+S+P+  QP+++  + S      A    AA     ++ED+
Sbjct: 182 NIRLPNVPSSSLPA--QPNRKPGMSS-----TARRSRAASSQRAEEEDD 223

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>CHM4C_BRARE (Q6IQ73) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 224

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 54/194 (27%), Positives = 80/194 (41%), Gaps = 11/194 (5%)
 Frame = +1

Query: 1   KLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFAS 180
           K+DAEL   K+   K          K  A++ LK++K YE Q   +      L  + F  
Sbjct: 44  KIDAELLIAKKNGTKN---------KRAALQALKRKKRYEKQLAQIDG---TLSTIEFQR 91

Query: 181 EGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDL---MDVSNEIQETLGRSY 351
           E +++A      +K      K M       DID + D M D+    +++ EI + + R  
Sbjct: 92  EALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQEISDAISRPV 151

Query: 352 NVPDDIDEEELMGELDAL---EADMDFESNSVPSYLQPDKETDLDSELNLPAAPSG---- 510
              ++ DE+ELM EL+ L   E D D    S P             ++ LP  PS     
Sbjct: 152 GFGEEFDEDELMAELEELEQEELDKDLLQISGP------------EDVPLPNVPSNPLPK 199

Query: 511 -HAAVPANRQQEDE 549
             A     RQ+EDE
Sbjct: 200 KTAVAQKKRQEEDE 213

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>SNF7_SCHPO (Q9P7F7) Vacuolar sorting protein snf7 (Vacuolar protein|
           sorting-associated protein vps32)
          Length = 222

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 32/127 (25%), Positives = 65/127 (51%)
 Frame = +1

Query: 76  KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 255
           K  A+  LK++KM+E +   +     N++Q  F+ +      +T+ AM+   + +K + +
Sbjct: 57  KRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQR 116

Query: 256 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNS 435
            +  + +D + D++ D   +S EI   +     +  +IDE+EL  ELD L+  M+ +S  
Sbjct: 117 GMDADKVDQIMDKIRDQQTISEEISTMISTPVGLNAEIDEDELANELDELQ-QMELDSKM 175

Query: 436 VPSYLQP 456
           + +   P
Sbjct: 176 LGAEKPP 182

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>CHM4B_XENLA (Q5XGW6) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 222

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
 Frame = +1

Query: 76  KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKA---ANKELKG 246
           K  A++ LK++K YE Q   +      L  + F  E +++A      +K    A K +K 
Sbjct: 60  KRAALQALKRKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGFAAKAMKA 116

Query: 247 MMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFE 426
               + IE +D +  ++ D  +++ EI + + +     +D DE+ELM EL+ LE + + +
Sbjct: 117 AHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQE-ELD 175

Query: 427 SNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDE 549
            N +   +Q  +   L    N+PAA     A P  ++QE++
Sbjct: 176 KNLLE--VQGPETVPLP---NVPAA--SLPAKPVKKKQEED 209

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>SNF7_YARLI (Q6CBS3) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 215

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
 Frame = +1

Query: 76  KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 255
           K  A   LK++K  E Q++ +     +L       E      +TM AM+   K +K +  
Sbjct: 53  KLMAKNALKKKKNLEKQQETVQGSIDSLQTSINTLETANLNLETMKAMQEGAKAMKQIHG 112

Query: 256 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEAD-MDFESN 432
            + I+ +D + DE  D + +S E+ E + R Y   +  D+EEL  EL+ALE + ++ E  
Sbjct: 113 NMNIDKVDKIMDETRDQVALSEEVSEAISRPY--ANAYDDEELEDELEALEQETLEGELT 170

Query: 433 SVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDE 549
           +     Q   +    +  +LPAAP+    VPA  + ++E
Sbjct: 171 NAGHVKQDGVQV---TPHDLPAAPN---QVPAEEEDDEE 203

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>CHM4B_XENTR (Q6GL11) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 222

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
 Frame = +1

Query: 76  KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKA---ANKELKG 246
           K  A++ LK++K YE Q   +      L  + F  E +++A      +K    A K +K 
Sbjct: 60  KRAALQALKRKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGFAAKAMKA 116

Query: 247 MMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFE 426
               + IE +D +  ++ D  +++ EI + + +     +D DE+ELM EL+ LE + + +
Sbjct: 117 AHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQE-ELD 175

Query: 427 SNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDE 549
            N +   +Q  +   L    N+PAA     A P  ++QE++
Sbjct: 176 KNLLE--VQGPETVPLP---NVPAAVL--PAKPVKKKQEED 209

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>VPS20_YEAST (Q04272) Vacuolar protein sorting protein 20 (Amino acid|
           sensor-independent protein 10) (Charged multivesicular
           body protein 6)
          Length = 220

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 5/176 (2%)
 Frame = +1

Query: 28  KEQIKKT-RPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQ 204
           K Q+K   R  P       +   +LK+    E       +Q  NL+ +    E     +Q
Sbjct: 41  KSQLKDLIRKNPENYKSNMKVRFLLKRIHYQEHLLQQASDQLINLENMVSTLEFKMVEKQ 100

Query: 205 TMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSY----NVPDDID 372
            +  +K  N+ LK + K     ++D + D++ D +   NEI ETL RS     N  DD+D
Sbjct: 101 FINGLKNGNEILKKLNK--EFSNVDELMDDVQDQIAYQNEINETLSRSLVGTSNYEDDLD 158

Query: 373 EEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQ 540
           +     ELDALE++++      P  +   K  ++ S   LP+ P G       R++
Sbjct: 159 K-----ELDALESELN------PEKMNNAKVANMPSTEGLPSLPQGEQTEQKEREE 203

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>CHMP7_HUMAN (Q8WUX9) Protein CHMP7|
          Length = 453

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 13/196 (6%)
 Frame = +1

Query: 4   LDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASE 183
           L  E  R KE+ ++      +   K  A+R LK ++  E + + L+ +   +  +     
Sbjct: 258 LSQEAERCKEEARRA----CRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIY 313

Query: 184 GIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPD 363
             +  Q    A +A    LK  MK V +E  +S+ D++ +L D  +E+ +TL        
Sbjct: 314 ASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGL 373

Query: 364 DIDEEELMGELDALEADMDFE-------------SNSVPSYLQPDKETDLDSELNLPAAP 504
           D D EEL  ELD L  D   E             +NSVP+    D E  L++EL   +  
Sbjct: 374 DFDSEELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE--LEAELEKLSLS 431

Query: 505 SGHAAVPANRQQEDEM 552
            G   VP+++  + ++
Sbjct: 432 EG-GLVPSSKSPKRQL 446

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>CHMP7_MOUSE (Q8R1T1) Protein CHMP7|
          Length = 451

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 42/153 (27%), Positives = 70/153 (45%)
 Frame = +1

Query: 16  LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKD 195
           L++  E+ K+      +   K  A+R LK ++  E + + L+ +   +  +       + 
Sbjct: 258 LSQESERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQT 317

Query: 196 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 375
            Q    A +A    LK  MK V +E  +S+ D++ +L D  +E+ +TL        D D 
Sbjct: 318 DQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDS 377

Query: 376 EELMGELDALEADMDFESNSVPSYLQPDKETDL 474
           EEL  ELD L  D   E  S+   L+  +ET L
Sbjct: 378 EELEKELDILLQDTTTEPLSL---LETPQETTL 407

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>CHM4B_CHICK (Q5ZHP5) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 227

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 44/187 (23%), Positives = 86/187 (45%), Gaps = 4/187 (2%)
 Frame = +1

Query: 1   KLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFAS 180
           K++ ELA  ++   K          K  A++ LK++K YE Q   +      L  + F  
Sbjct: 48  KIEQELAAARKHGTKN---------KRAALQALKRKKRYEKQLAQIDG---TLSTIEFQR 95

Query: 181 EGIKDAQQTMTAMKA---ANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSY 351
           E +++A      +K    A K +K     + I+ +D +  ++ +  ++++EI   + +  
Sbjct: 96  EALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPV 155

Query: 352 NVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPS-GHAAVPA 528
              ++ DE+ELM EL+ LE + + + N +        E      + LP  PS    + PA
Sbjct: 156 GFGEEFDEDELMAELEELEQE-ELDKNLL--------EISGPETVPLPNVPSISIPSKPA 206

Query: 529 NRQQEDE 549
            +++E+E
Sbjct: 207 KKKEEEE 213

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>CHMP7_PONPY (Q5R812) Protein CHMP7|
          Length = 453

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 40/146 (27%), Positives = 65/146 (44%)
 Frame = +1

Query: 4   LDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASE 183
           L  E  R KE+ ++      +   K  A+R LK ++  E + + L+ +   +  +     
Sbjct: 258 LSQEAERCKEEARRA----CRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIY 313

Query: 184 GIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPD 363
             +  Q    A +A    LK  MK V +E  +S+ D++ +L D  +E+ +TL        
Sbjct: 314 ASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGL 373

Query: 364 DIDEEELMGELDALEADMDFESNSVP 441
           D D EEL  ELD L  D   E   +P
Sbjct: 374 DFDSEELEKELDILLQDTTKEPLDLP 399

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>CHM4B_MOUSE (Q9D8B3) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 224

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
 Frame = +1

Query: 76  KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKA---ANKELKG 246
           K  A++ LK++K YE Q   +      L  + F  E +++A      +K    A K +K 
Sbjct: 62  KRAALQALKRKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGYAAKAMKA 118

Query: 247 MMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFE 426
               + I+ +D +  ++ D  +++ EI   + +     ++ DE+ELM EL+ LE + + +
Sbjct: 119 AHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQE-ELD 177

Query: 427 SNSVPSYLQPDKETDLDSELNLPAAPS-GHAAVPANRQQEDE 549
            N +        E      + LP  PS    + PA +++E++
Sbjct: 178 KNLL--------EISGPETVPLPNVPSVALPSKPAKKKEEED 211

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>CHM4B_HUMAN (Q9H444) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b) (Vacuolar
           protein sorting 7-2) (SNF7-2) (hSnf7-2) (SNF7 homolog
           associated with Alix 1) (hVps32)
          Length = 224

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
 Frame = +1

Query: 76  KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKA---ANKELKG 246
           K  A++ LK++K YE Q   +      L  + F  E +++A      +K    A K +K 
Sbjct: 62  KRAALQALKRKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGYAAKAMKA 118

Query: 247 MMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFE 426
               + I+ +D +  ++ D  +++ EI   + +     ++ DE+ELM EL+ LE + + +
Sbjct: 119 AHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQE-ELD 177

Query: 427 SNSVPSYLQPDKETDLDSELNLPAAPS-GHAAVPANRQQEDE 549
            N +        E      + LP  PS    + PA +++E++
Sbjct: 178 KNLL--------EISGPETVPLPNVPSIALPSKPAKKKEEED 211

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>SNF7_YEAST (P39929) Vacuolar sorting protein SNF7 (DOA4-independent|
           degradation protein 1) (Vacuolar protein
           sorting-associated protein VPS32)
          Length = 240

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
 Frame = +1

Query: 76  KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 255
           K  A   LK++K  E     +     +++Q  F+ E      +TM AM+   K +K +  
Sbjct: 60  KVMAKNALKKKKTIEQLLSKVEGTMESMEQQLFSIESANLNLETMRAMQEGAKAMKTIHS 119

Query: 256 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRS-YNVPDDIDEEELMGELDALEADMDFESN 432
            + I+ +D   DE+ + +++ +EI + + R      +++DE+EL  ELD L  +   +  
Sbjct: 120 GLDIDKVDETMDEIREQVELGDEISDAISRPLITGANEVDEDELDEELDMLAQENANQET 179

Query: 433 SVPSYLQPDKETDLDSELNLPAAPS-----GHAAVPANRQQEDE 549
           S       +     +++++LP+ PS        +V    ++EDE
Sbjct: 180 SKIVNNNVNAAPISENKVSLPSVPSNKIKQSENSVKDGEEEEDE 223

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>CHMP7_CHICK (Q5ZJB7) Protein CHMP7|
          Length = 448

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 44/179 (24%), Positives = 80/179 (44%)
 Frame = +1

Query: 16  LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKD 195
           L++  E+ K       +   K  A+R LK ++  E + + L+++   +  +       + 
Sbjct: 256 LSQEAEKCKDDARSACRAGKKQLALRCLKSKRRTERRIEELHSKLDAVQGILDRIYASQT 315

Query: 196 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 375
            Q    A +A    LK  MK V +E  +++ D++ +L D  +E+ +TL  +     ++D 
Sbjct: 316 DQMVFNAYQAGVGALKLSMKDVTVEKAENLVDQIQELCDTQDEVAQTLAGAGVNGLEMDS 375

Query: 376 EELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDEM 552
           EEL  ELD+L  D    S   P +L P           +P   SG A   ++ + E E+
Sbjct: 376 EELEKELDSLLQD----SAKEPVHLHP-----------VPQKDSGFAGAISDAELEAEL 419

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>CG301_HUMAN (P59074) Protein CGI-301|
          Length = 171

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 3/147 (2%)
 Frame = +1

Query: 76  KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 255
           K  A++ LK++K YE Q   +      ++    A E      + +  M +A K  K    
Sbjct: 22  KPAALQALKRKKRYEKQLAQIDGTLSTIEFQQQALENANTNTEVLKNMGSAAKAKKAAHD 81

Query: 256 TVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNS 435
            + I+ +D +  ++ D  ++  EI   + +     +  DE+ELM EL+ LE +       
Sbjct: 82  NMDIDKVDELMQDIADQQELGEEISTAISKPVGFGEKSDEDELMAELEELEQE------- 134

Query: 436 VPSYLQPDK---ETDLDSELNLPAAPS 507
                +PDK   E      + LP  PS
Sbjct: 135 -----EPDKNLLEVSGPETVPLPNVPS 156

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>SMC_METJA (Q59037) Chromosome partition protein smc homolog|
          Length = 1169

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 32/164 (19%), Positives = 81/164 (49%), Gaps = 9/164 (5%)
 Frame = +1

Query: 1   KLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFAS 180
           K++ E+   K++IK+T+    ++ ++ R   I K++++ E + + + N  Y  +++    
Sbjct: 325 KVEVEIENKKKEIKETQ----KKIIENRDSIIEKEQQIKEIE-EKIKNLNYEKERL---K 376

Query: 181 EGIKDAQQTMTAMKAANKEL-----KGMMKTVRIE----DIDSMQDEMMDLMDVSNEIQE 333
           E I +++  +  +K +  E+     K   +  R++    D+D++ +     ++ +NE+ +
Sbjct: 377 EAIAESESIIKHLKESEMEIADEIAKNQNELYRLKKELNDLDNLINRKNFEIEKNNEMIK 436

Query: 334 TLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKE 465
            L       +D+D + L  EL+ L  +++F    +    +  KE
Sbjct: 437 KLKEELETVEDVDTKPLYLELENLNVEIEFSKRGIKELEEKKKE 480

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>NU159_YEAST (P40477) Nucleoporin NUP159 (Nuclear pore protein NUP159)|
          Length = 1460

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
 Frame = +1

Query: 292  EMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALE-------ADMDFESNSVPSYL 450
            E  D M ++++  E++  SY+  +DI+ +EL    +A +       AD D +++   +Y 
Sbjct: 1059 ESDDNMSLNSDRDESISESYDKLEDINTDELPHGGEAFKAREVSASADFDVQTSLEDNYA 1118

Query: 451  QPDKETDL-----DSELNLPAAPSGHAAVPANRQQEDEMGLPTVP 570
            +   +TDL     ++E+   A P  H +    +++  + GL T P
Sbjct: 1119 ESGIQTDLSESSKENEVQTDAIPVKHNSTQTVKKEAVDNGLQTEP 1163

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>DNAK_WOLTR (Q5GSE1) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 635

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
 Frame = +1

Query: 28  KEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASE------GI 189
           +++I+    G   E+   R +R  +++   + +R          D +  ++E      G 
Sbjct: 486 EQKIRIQSSGGLSESEINRMIREAEEKAQEDEKRKKFVEVKNQADSLVHSTEKSLKEYGD 545

Query: 190 KDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETL 339
           K + +  +A++ A  ELK   K+  I+D+DS+Q ++ +L  +S ++ ET+
Sbjct: 546 KVSPEDKSAIENAVNELKEASKSDNIDDVDSIQQKITNLSQLSMKLGETI 595

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>LRC45_MOUSE (Q8CIM1) Leucine-rich repeat-containing protein 45|
          Length = 670

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
 Frame = +1

Query: 4   LDAELARYKEQIKKTRPGPAQEAVKARAM-RILKQRKMYEGQRDMLYNQTYNLDQVAFAS 180
           L+ EL+R K  +   R    +E +KAR   R+ +Q ++       L  +   L Q    +
Sbjct: 465 LEEELSRMKAAVLSERGQAEEELIKARNQARLEEQHRLAH-----LEEKIRLLAQARDEA 519

Query: 181 EGIKDAQQTMTAMKAA-----NKELKGM---MKTVRIEDIDSMQDEMMDLMDVSNEIQET 336
           +G    Q+ M A   A     N +++G    ++ ++ E I+  Q+++ ++  V  E+QE 
Sbjct: 520 QGTCVQQKQMVAESQARVSQLNLQMEGQQRRLEELQQELINKDQEKVAEVARVRVELQEQ 579

Query: 337 LGRSYNVPDDIDEEELMGELDALEADM 417
           +GR     D + +E L  ++ ALE  M
Sbjct: 580 MGRMQ--ADLVAQEALREKVAALERQM 604

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>SYS_VIBPA (Q87QP1) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 435

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
 Frame = +1

Query: 211 TAMKAANKELKGMMKTVRI--EDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEEL 384
           TA K A +  K  ++T+R   E   S+Q E+ +L    N I + +G+     D    EE+
Sbjct: 14  TAAKLARRGFKLDVETIRKLEEQRKSIQVEVENLQSTRNSISKQIGQKMAAGDKEGAEEI 73

Query: 385 MGELDALEADMDFESNSVPSYL-QPDKETDLDSELNLPAAPSGHAAVPANRQQEDEM 552
             ++  L +D+D +   +   + Q D+ T     L++P  P+    VP  + + D +
Sbjct: 74  KKQIGTLGSDLDAKKVELEQVMAQLDEFT-----LSVPNIPADE--VPDGKDENDNV 123

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>YJE9_YEAST (P47048) Hypothetical 52.8 kDa protein in MTR4-GYP6 intergenic|
           region
          Length = 450

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
 Frame = +1

Query: 202 QTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEE 381
           QT++      K + G + +   E ++ + DE+ +  D + E+ + L       D+  EEE
Sbjct: 321 QTLSESNEVIKSINGYIGST--EKVEDLLDEIKEGHDRTEEVNDLLAHYNKGQDEEAEEE 378

Query: 382 LMGELDALEAD---MDFESNSVPSYLQPDKET--DLDSELNLPAAPSGHAAVPANRQQED 546
           +  EL+ LE D    + E N      +P + +  DL   LN     +    V  N   ++
Sbjct: 379 IERELEQLELDEKNNNKEENKNQDLHEPKESSSEDLLKRLNNLKINTNEGPVQDNENHDN 438

Query: 547 EM 552
           E+
Sbjct: 439 EI 440

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>DNAK_WOLPM (Q73GL7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 640

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
 Frame = +1

Query: 100 KQRKMYE--GQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIED 273
           K++K  E   Q D L + T    + +    G K + +  +A++ A  ELK + K+  I+D
Sbjct: 522 KRKKFIEVKNQADSLVHST----EKSLTEYGDKVSPEDRSAIENAVNELKEVSKSDNIDD 577

Query: 274 IDSMQDEMMDLMDVSNEIQETL 339
            DS+Q ++ +L  +S ++ E +
Sbjct: 578 ADSIQQKVTNLSQLSMKLGEAM 599

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>MLP2_YEAST (P40457) Protein MLP2 (Myosin-like protein 2)|
          Length = 1679

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
 Frame = +1

Query: 175 ASEGIKDAQQTMTAMKAAN----KELKGMMKTVRIED---IDSMQDEMMDLMDVSNEIQE 333
           ++E  K    ++T+M+AA     +EL+  + + ++E+   I +++ E++       + + 
Sbjct: 595 STEENKANTNSVTSMEAAREKKIRELEAELSSTKVENSAIIQNLRKELLIYKKSQCKKKT 654

Query: 334 TLGRSYNVPDDIDEEELMGE--LDALEADMDFESNSVPSYLQPDKE 465
           TL    N      E+E M E  +D L+A+++ + + VPSY+  +KE
Sbjct: 655 TLEDFENFKGLAKEKERMLEEAIDHLKAELEKQKSWVPSYIHVEKE 700

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>MDN1_YEAST (Q12019) Midasin (MIDAS-containing protein)|
          Length = 4910

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 26/103 (25%), Positives = 47/103 (45%)
 Frame = +1

Query: 181  EGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVP 360
            EG      T     A   +L+ + + + I+D D  + E+     V +   E +       
Sbjct: 4495 EGANTETDTQALGSATQDQLQTIDEDMAIDD-DREEQEVDQKELVEDADDEKM------- 4546

Query: 361  DDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELN 489
             DIDEEE++ ++DA +A+ D +S       +   E D ++EL+
Sbjct: 4547 -DIDEEEMLSDIDAHDANNDVDSKKSGFIGKRKSEEDFENELS 4588

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>RPOE_BACSU (P12464) DNA-directed RNA polymerase delta subunit (RNAP delta|
           factor)
          Length = 173

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = +1

Query: 199 QQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVS-NEIQETLGRSYNVPDDIDE 375
           ++T   +KA  K+ K  ++    ED+D  + E +D  D+  +E++E L       DD DE
Sbjct: 89  EETQPTVKAKKKKAKKAVE----EDLDLDEFEEIDEDDLDLDEVEEELDLE---ADDFDE 141

Query: 376 EELMGELDALEADMDFESNSVPSYLQPDKE 465
           E+L  + D LE + D        Y   ++E
Sbjct: 142 EDLDEDDDDLEIEEDIIDEDDEDYDDEEEE 171

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>MYH3_CHICK (P02565) Myosin heavy chain, fast skeletal muscle, embryonic|
          Length = 1940

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
 Frame = +1

Query: 7    DAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEG 186
            + E+A  KE+ +KT+    +E  K+ A    K++++ E    +L  +     QV   ++G
Sbjct: 851  EKEMANMKEEFEKTK----EELAKSEA----KRKELEEKMVSLLQEKNDLQLQVQAEADG 902

Query: 187  IKDAQQTMTAMKAANKELKGMMK--TVRIEDIDSMQDEM----MDLMDVSNEIQETLGRS 348
            + DA++    +     +L+  +K  T R ED + M  E+      L D  +E+++     
Sbjct: 903  LADAEERCDQLIKTKIQLEAKIKELTERAEDEEEMNAELTAKKRKLEDECSELKK----- 957

Query: 349  YNVPDDIDEEEL 384
                 DID+ EL
Sbjct: 958  -----DIDDLEL 964

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>CUL6_CAEEL (Q21346) Cullin-6|
          Length = 729

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
 Frame = +1

Query: 16  LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDM--LYNQTYNLDQVAFASEGI 189
           LARY +Q+ K       E    +A+ +LK    Y  ++D+  LY Q +  +++   S   
Sbjct: 382 LARYCDQLLKKNSKVQDETALDKALTVLK----YISEKDVFQLYYQNWFSERIINNSSAS 437

Query: 190 KDAQQTMTAMKAANKELKGMMKTVR-IEDIDSMQDEMMDLMDVSNE 324
            DA++       A + L+     V+ +ED    +D   +  D+  E
Sbjct: 438 DDAEEKFITNLTATEGLEYTRNLVKMVEDAKISKDLTTEFKDIKTE 483

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>CWLO_BACSU (P40767) Peptidoglycan DL-endopeptidase cwlO precursor (EC 3.4.-.-)|
           (D-gamma-glutamyl-meso-diaminopimelyl DL-endopeptidase)
           (PSPA2)
          Length = 473

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
 Frame = +1

Query: 1   KLDAELARYKEQIKKT--RPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAF 174
           K   E+ + K++IK+T  R     E +K R +R L++    +G  D+L   T   D ++ 
Sbjct: 95  KTKEEIKKLKKEIKETEARIEKRNEILKKR-VRSLQESGGSQGYIDVLLGSTSFGDFISR 153

Query: 175 ASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYN 354
           A+         ++++  A+K+L    +    +D   ++D   DL D   E+Q  L +   
Sbjct: 154 AT--------AVSSIVDADKDLIKQQE----QDKAKLEDSEADLNDKLKEVQAALAKLET 201

Query: 355 VPDDIDEEELMGELDAL 405
           +  D+D++  + E D L
Sbjct: 202 MQKDLDKQ--LNEKDKL 216

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>SQT1_YEAST (P35184) Ribosome assembly protein SQT1|
          Length = 431

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
 Frame = +1

Query: 286 QDEMMDLMDVSNEIQETLGRSYNVPDDI-----DEEELMG-ELDALEADMDFESNSVPSY 447
           Q+E +   +V  EI  T+    +VP DI     D++E+M  + +ALE DM   SN+  +Y
Sbjct: 4   QEEFITTEEVEQEIVPTVEVEQDVPVDIEGENDDDDEMMNDDEEALEVDM---SNNSLTY 60

Query: 448 LQPDKETD----LDSELNLPAAPSG 510
              DK TD    +    NLP   +G
Sbjct: 61  F--DKHTDSVFAIGHHPNLPLVCTG 83

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>DYNA_CHICK (P35458) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1224

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 3/139 (2%)
 Frame = +1

Query: 1   KLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFAS 180
           +L+ + AR KE + + R   A E  K   +++ KQ +    + + L  Q   L       
Sbjct: 355 QLEEQNARLKEALVRMRDLSASE--KQEHVKLQKQMEKKNTELESLRQQREKLQ------ 406

Query: 181 EGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLG---RSY 351
           E +K A++T+  +K       G       E ++++ +  +DL +   E++ET+G      
Sbjct: 407 EEVKQAEKTVDELKEQVDAALGAE-----EMVETLTERNLDLEEKVRELRETVGDLEAMN 461

Query: 352 NVPDDIDEEELMGELDALE 408
            + D++ E     EL+  E
Sbjct: 462 EMNDELQENARETELELRE 480

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>ECX1_METMA (Q8PTT8) Probable exosome complex exonuclease 1 (EC 3.1.13.-)|
          Length = 493

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
 Frame = +1

Query: 187 IKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDD 366
           +++  +     K A KE+        I +    + E  ++ ++S E++  +  S  +PD 
Sbjct: 241 VEEVSEETAPEKGAEKEVLEPSPVAAIVEETPEEAEEPEV-EISEEVEAEILASEVIPDF 299

Query: 367 IDE--EELMGELDALEADMD-----FESNSVPSYLQPDKETDLDSELNL 492
            DE  EE+  EL+  E D++     FE  ++    +P+++ + D E +L
Sbjct: 300 EDELEEEIEEELEESEEDLETEEEEFEEEALEEEAEPEEDLEEDLEEDL 348

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>TIG_STRMU (Q8CWZ6) Trigger factor (TF)|
          Length = 427

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 32/153 (20%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
 Frame = +1

Query: 4   LDAELARYKEQIKKTRPGPAQEAVKARAMRI-LKQRKMYEGQRDMLYNQTYNLDQVAFAS 180
           LD   A+Y+++++ T+     +AV+A A+ + +   ++ E   +M++      D+V  A 
Sbjct: 265 LDELKAKYRKELEATKETAYNDAVEAAAIDLAVANAEIVELPEEMIH------DEVQRAM 318

Query: 181 EGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVP 360
           +      Q          +L G  +    ED+    +   D    +N + E + ++    
Sbjct: 319 QEFMGNMQRQGISSEMYFQLTGTTE----EDLRKQYEADADKRVKTNLVIEAVAKAEGF- 373

Query: 361 DDIDEEELMGELDALEADMDFESNSVPSYLQPD 459
            +  +EE+  E+  L  +   E+  V S L PD
Sbjct: 374 -EATDEEIEKEISDLATEYKMEAEQVRSLLSPD 405

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>APEA_DICDI (P51173) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)|
           (Class II apurinic/apyrimidinic(AP)-endonuclease)
          Length = 361

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +1

Query: 367 IDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQED 546
           +DEEE++ + D  E   + E   V    + DK+  L  +     AP+  AA     + ED
Sbjct: 10  MDEEEILKKEDGSETTSEEEKEEVEEEEEEDKKRKLVKKTPAKKAPAKKAAAKKKSKDED 69

Query: 547 E 549
           E
Sbjct: 70  E 70

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>RPOB_THETN (Q8R7U6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1234

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
 Frame = +1

Query: 214  AMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETL------GRSYNVPDDIDE 375
            + K   KEL+ +   V++   D  +  + +  D  +++ +        GR    P+++ E
Sbjct: 1139 SFKVLVKELQSLALDVKVITEDGQEIPIKEFEDDDDDVPDATLNINIEGREDAPPEEVYE 1198

Query: 376  EELMGELDALEADMDFESNSVPSYLQPDKETDLDSE 483
            EE   E + L  D+DFE         PD   D+DSE
Sbjct: 1199 EEYEEEPEELPEDIDFE---------PD-NFDIDSE 1224

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>DNAK_EHRRW (Q5HAY1) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 645

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 21/85 (24%), Positives = 44/85 (51%)
 Frame = +1

Query: 100 KQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDID 279
           ++RK +   ++   N  ++ ++ +    G K +      ++ A ++LK  +    IED D
Sbjct: 525 EKRKKFVEVKNNAENLVHSTEK-SLKEHGDKISNADKLDIENAIRDLKDCISKDNIEDTD 583

Query: 280 SMQDEMMDLMDVSNEIQETLGRSYN 354
           +MQ+++  LM VS ++ E L  + N
Sbjct: 584 TMQNKLDHLMKVSMKLGEALYSNTN 608

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>DNAK_EHRRG (Q5FFM4) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 645

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 21/85 (24%), Positives = 44/85 (51%)
 Frame = +1

Query: 100 KQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDID 279
           ++RK +   ++   N  ++ ++ +    G K +      ++ A ++LK  +    IED D
Sbjct: 525 EKRKKFVEVKNNAENLVHSTEK-SLKEHGDKISNADKLDIENAIRDLKDCISKDNIEDTD 583

Query: 280 SMQDEMMDLMDVSNEIQETLGRSYN 354
           +MQ+++  LM VS ++ E L  + N
Sbjct: 584 TMQNKLDHLMKVSMKLGEALYSNTN 608

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>OMPA_THEMA (Q01969) Outer membrane protein alpha precursor|
          Length = 400

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 27/126 (21%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
 Frame = +1

Query: 64  QEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELK 243
           +E +  +   I    +++E     LYN+   L++    ++ I D +  ++A   + ++  
Sbjct: 237 EEKLSRKDEEISAMVELHEKDIINLYNKVAALNEDL--NKKILDTKAELSAKIESQEKTL 294

Query: 244 GMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEE---LMGELDALEAD 414
            M+ T  ++    + DE+  L +   EIQ+T+        D+ E++   L G+  +LE D
Sbjct: 295 NMVYTKLLDTESKLNDEISALKEKDAEIQKTV--------DLHEQDIVNLYGKTSSLEED 346

Query: 415 MDFESN 432
           ++ + N
Sbjct: 347 LNMKYN 352

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>SPB1_EMENI (Q5BH88) AdoMet-dependent rRNA methyltransferase spb1 (EC 2.1.1.-)|
           (2'-O-ribose RNA methyltransferase)
           (S-adenosyl-L-methionine-dependent methyltransferase)
          Length = 806

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 9/180 (5%)
 Frame = +1

Query: 4   LDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASE 183
           +D ELA  +E ++      A+   + R     K++++   Q  M       ++Q+    E
Sbjct: 353 MDDELAIQEELLRLKEKESARSKKERRKENERKRKEIVRMQMHMTTPMDIGMEQLGPGGE 412

Query: 184 ----GIKDAQQT-MTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRS 348
                +K A++    A  A+ KEL  +       + ++  D+  D  D      ++L   
Sbjct: 413 DATFSLKRAEKAGAAAAMASGKELAVIESESEESESETEYDDSDDEGDRLERELDSLYEQ 472

Query: 349 YNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSE----LNLPAAPSGHA 516
           Y       +E+   +L A +A  D+E++    +   DKE   D E     N+P  P+  A
Sbjct: 473 YQER----KEDKDSKLRAKKARKDYEADEWEGFSDSDKEGSDDEEDEAKPNVPVVPTNGA 528

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>ZN198_MOUSE (Q9CU65) Zinc finger protein 198 (Fragment)|
          Length = 988

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +1

Query: 277 DSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQP 456
           D +  E++ + D+  E +E    + N+   I E +++G      +D D +SN       P
Sbjct: 555 DPLDSELLTMTDMMTE-EEGKAEASNINSVIIETDIIGSDLTKNSDPDIQSN------MP 607

Query: 457 D--KETDLDSELNLPAA 501
           D   E DLD E++ P A
Sbjct: 608 DVPYEPDLDIEIDFPRA 624

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>TRI37_HUMAN (O94972) Tripartite motif protein 37 (Mulibrey nanism protein)|
          Length = 964

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +1

Query: 271 DIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSV 438
           D+D + ++ ++ +D S+    +   S    +DIDEE + GE D    +M+ E   +
Sbjct: 519 DLDLVYEDEVNQLDGSSSSASSTATSNTEENDIDEETMSGENDVEYNNMELEEGEL 574

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>TIG_BACSU (P80698) Trigger factor (TF) (Vegetative protein 2) (VEG2)|
          Length = 423

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 25/112 (22%), Positives = 50/112 (44%)
 Frame = +1

Query: 82  RAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTV 261
           R ++  +QR   +G    LY Q    D+ A   +  +DA++ +     +N  L+ + K  
Sbjct: 314 RMLKEFEQRLQMQGMNLELYTQFSGQDEAALKEQMKEDAEKRV----KSNLTLEAIAKAE 369

Query: 262 RIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADM 417
            +E  D   D  +  M            +YN+P + + ++ +G  DA++ D+
Sbjct: 370 NLEVSDEEVDAELTKM----------AEAYNMPVE-NIKQAIGSTDAMKEDL 410

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>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau|
            kinase)
          Length = 1321

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 24/59 (40%), Positives = 28/59 (47%)
 Frame = -3

Query: 544  PPAAGSPGLLHDHLVQQVS*AQNQDQSPCLVGGTMGLNSIQSPYRLPKHQARP*VPPRR 368
            PPA  SP      L    S A+N   SP     +  L+  +SP   P HQARP VPP R
Sbjct: 1227 PPAPRSP-----RLPASTSAARNASASP----RSQSLSRRESPS--PSHQARPGVPPPR 1274

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>HDA3_YEAST (Q06623) HDA1 complex subunit 3 (Histone deacetylase complex 1|
           subunit 3)
          Length = 655

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 22/129 (17%)
 Frame = +1

Query: 172 FASEGIKDAQQTMTAMKAANK--------ELKGMMKTVRIE----DIDSMQDEMMDLMDV 315
           F++E  K  ++  T ++  N+        E++  +K  +IE    DI++++  +M   + 
Sbjct: 456 FSNEDEKIIKEYETVLRTNNENLNRSHELEVENNLKFSQIETLEKDIETLKGSLMAQGET 515

Query: 316 SNEIQETLGRSYNVPDDIDEEELMG----------ELDALEADMDFESNSVPSYLQPDKE 465
            +++++   ++ NV D+I++EE +           E +   A      N   ++   +K+
Sbjct: 516 LSKLKDAFVKTDNVQDEIEKEERVSVSRDTEKKYMEQEIKRAVDAIRENEEETHKLNEKQ 575

Query: 466 TDLDSELNL 492
             L+SEL L
Sbjct: 576 NGLESELKL 584

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>KIF5C_HUMAN (O60282) Kinesin heavy chain isoform 5C (Kinesin heavy chain|
           neuron-specific 2)
          Length = 957

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 26/120 (21%), Positives = 55/120 (45%)
 Frame = +1

Query: 28  KEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQT 207
           + Q+++++   ++E  K RA   + +    + +++       +L ++  A E  K  +Q 
Sbjct: 654 RRQLEESQDSLSEELAKLRAQEKMHEVSFQDKEKE-------HLTRLQDAEEMKKALEQQ 706

Query: 208 MTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELM 387
           M + + A+++    ++   IE+   + DE+ DL       QE L   YN     D+E  M
Sbjct: 707 MESHREAHQKQLSRLRD-EIEEKQKIIDEIRDLNQKLQLEQEKLSSDYNKLKIEDQEREM 765

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>DPO5_YEAST (P39985) DNA polymerase V (EC 2.7.7.7) (POL V)|
          Length = 1022

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 26/133 (19%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
 Frame = +1

Query: 94   ILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIED 273
            ILK R+  +G    L+      +++   ++  +D  +T      +  E +    +   ++
Sbjct: 688  ILKARENKQGFAQ-LFEGEEEFEEIKEENDASEDESKT-----GSESESESESDSDDADE 741

Query: 274  IDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEA-DMDFESNSVPSYL 450
             D   +   D++++  E    L ++ N+PD+I  ++   +LD LE    D   +     +
Sbjct: 742  KDEEDEANEDILNIDKEATSALVKALNLPDNIVNDKGEVDLDQLEGLSDDGGDDEDEESM 801

Query: 451  QPDKETDLDSELN 489
              +K  +LD +L+
Sbjct: 802  DDEKMMELDDQLS 814

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>CTGE5_MOUSE (Q8R311) Cutaneous T-cell lymphoma-associated antigen 5 homolog|
           (cTAGE-5 protein) (Meningioma-expressed antigen 6)
          Length = 779

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 22/108 (20%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
 Frame = +1

Query: 85  AMRILKQRKMYEGQRDMLYNQTYNLDQV-AFASEGIKDAQQTMTAMKAANKELKGMMKTV 261
           A ++    K  EG+R+ +Y Q   +DQV    +E IK  +    ++++   E +      
Sbjct: 297 AAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFE------ 350

Query: 262 RIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDD--IDEEELMGELD 399
              +   +Q ++  + ++  E +  L R   V ++  +++EE + ++D
Sbjct: 351 --SESQKLQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVD 396

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>EZRA_BACSU (O34894) Septation ring formation regulator ezrA|
          Length = 562

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/60 (28%), Positives = 34/60 (56%)
 Frame = +1

Query: 196 AQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDE 375
           A++T++ +K    E   ++KT  I  I S   EM++  +  + IQET+ +   +P +++E
Sbjct: 415 ARETLSNLKKTISETARLLKTSNIPGIPSHIQEMLE--NAHHHIQETVNQLNELPLNMEE 472

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>RPOB_DEHSC (Q3ZX01) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1273

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = +1

Query: 187  IKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMD-VSNEI-QETLGRSYNVP 360
            +K+ Q    A++  N+E+K        E + S+ +  +   D +S EI  ETL   Y   
Sbjct: 1186 VKELQSLGLAVEVINEEVK----IAPSEKVSSLNEGNLPASDEISAEILPETL---YANT 1238

Query: 361  DDIDEEELMGELDALEADMDFESN 432
            +DI E+ +M  +DA + D+   SN
Sbjct: 1239 EDISEDSMMSVIDADDQDLVVSSN 1262

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>SYS_LACJO (Q74HZ5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 436

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 160 DQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMM 300
           DQ+A A    +DA   + AM+   KE+K + K   +ED+   Q+ ++
Sbjct: 57  DQIAQAKRNKEDASDAIKAMREVGKEIKDLDK--EVEDLTQKQNYIL 101

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>UTRO_HUMAN (P46939) Utrophin (Dystrophin-related protein 1) (DRP1) (DRP)|
          Length = 3433

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
 Frame = +1

Query: 43   KTRPGPAQEAVK-ARAMRILKQRKMYEGQRDMLYNQTYNLD-QVAFASEGIKDAQQTMTA 216
            KT   P + A K A+AMR  KQ    + + + L   T N   QV  A E ++D Q  M  
Sbjct: 2645 KTELTPEERAQKIAKAMR--KQSSEVKEKWESLNAVTSNWQKQVDKALEKLRDLQGAMDD 2702

Query: 217  MKAANKELKGMM---KTVRIEDIDSMQDEMMDLMDVSNEI 327
            + A  KE + +    K V    IDS+QD +  +M    EI
Sbjct: 2703 LDADMKEAESVRNGWKPVGDLLIDSLQDHIEKIMAFREEI 2742

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>GVPD2_HALSA (Q9HHT2) Protein gvpD 2|
          Length = 492

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = -3

Query: 544 PPAAGSPGLLHDHLVQQVS*AQNQDQS---PCLVGGTMGLNSIQSPYRLPKHQARP 386
           PP  GSPGLLH+ L   +S A             G T   +    P RLP H   P
Sbjct: 318 PPKEGSPGLLHNDLSAVLSKAVFDTHCHVFETYAGPTRDHDDAVDPDRLPGHDTTP 373

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>DBP9_SCHPO (O60080) ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)|
          Length = 595

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 349 YNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSE 483
           Y +    DE  +MGE++ LE ++DF    V S  QP  +   D E
Sbjct: 311 YQIIIATDESGMMGEIEELENNVDFVEEEVISTDQPTLDKMKDQE 355

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>SYT_LEIXX (Q6AFC3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 695

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 23/75 (30%), Positives = 36/75 (48%)
 Frame = +1

Query: 52  PGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAAN 231
           P P Q  ++ARA R  +    +  + D+L      +DQVA   E   D  +++ AM+  N
Sbjct: 5   PSPPQAGLRARAARAFRLELTHPFRHDLL-----GVDQVADGFEFFTD--RSVVAMR-VN 56

Query: 232 KELKGMMKTVRIEDI 276
            ELK +   V   D+
Sbjct: 57  GELKDLATIVTTTDV 71

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>DNAJM_MYCPN (P75354) DnaJ-like protein MG200 homolog|
          Length = 910

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
 Frame = +1

Query: 190 KDAQQTMTAMKA----ANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNV 357
           K  ++T T  K      +K+ +    T    D+D+  ++     D  ++I +   R    
Sbjct: 110 KKKEKTKTKKKGWFWGKSKQEESTSDTTEYADVDAGLEDYPPQSDYPDDIPDVDARI--- 166

Query: 358 PDDIDEEELMGELDALEADMDFESN----SVPSYLQPDKETDLDSELNLPAA 501
            +++D+     ++  ++A MD+E N    +  S + PD +  L  E N  +A
Sbjct: 167 -EEVDQSAYADDIPDVDAGMDWEQNAEVANSASEIIPDVDAGLADEFNTSSA 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,822,337
Number of Sequences: 219361
Number of extensions: 1556712
Number of successful extensions: 5336
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 5098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5312
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result