| Clone Name | bags37a01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102673.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102C12, full insert sequence Length = 966 Score = 163 bits (82), Expect = 1e-37 Identities = 100/105 (95%), Gaps = 1/105 (0%) Strand = Plus / Plus Query: 1 aggttccactcagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncc 60 |||||||| ||||||||||||||||||||||||||| |||||||| |||||||||| || Sbjct: 78 aggttcca-tcagtaccaggtggtgggtcgcgcgctcccgacccccggcgatgagcaccc 136 Query: 61 caagatctaccgcatgaagctctgggccaccaacgaggtccgcgc 105 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 caagatctaccgcatgaagctctgggccaccaacgaggtccgcgc 181
>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0053D02, complete sequence Length = 157106 Score = 161 bits (81), Expect = 5e-37 Identities = 92/96 (95%) Strand = Plus / Plus Query: 10 tcagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncccaagatcta 69 ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| Sbjct: 128581 tcagtaccaggtggtgggtcgcgcgctcccgacccccggcgatgagcaccccaagatcta 128640 Query: 70 ccgcatgaagctctgggccaccaacgaggtccgcgc 105 |||||||||||||||||||||||||||||||||||| Sbjct: 128641 ccgcatgaagctctgggccaccaacgaggtccgcgc 128676
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 161 bits (81), Expect = 5e-37 Identities = 92/96 (95%) Strand = Plus / Plus Query: 10 tcagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncccaagatcta 69 ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| Sbjct: 27898164 tcagtaccaggtggtgggtcgcgcgctcccgacccccggcgatgagcaccccaagatcta 27898223 Query: 70 ccgcatgaagctctgggccaccaacgaggtccgcgc 105 |||||||||||||||||||||||||||||||||||| Sbjct: 27898224 ccgcatgaagctctgggccaccaacgaggtccgcgc 27898259
>ref|NM_191921.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 588 Score = 147 bits (74), Expect = 7e-33 Identities = 98/105 (93%), Gaps = 1/105 (0%) Strand = Plus / Plus Query: 1 aggttccactcagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncc 60 |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| || Sbjct: 13 aggttcca-tcagtaccaggtggtggggcgcgcgctgccgacccccggcgatgagcaccc 71 Query: 61 caagatctaccgcatgaagctctgggccaccaacgaggtccgcgc 105 |||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 72 caagatctaccggatgaagctctgggccaccaatgaggtccgcgc 116
>gb|BT017327.1| Zea mays clone EL01N0320F05.c mRNA sequence Length = 791 Score = 147 bits (74), Expect = 7e-33 Identities = 98/105 (93%), Gaps = 1/105 (0%) Strand = Plus / Plus Query: 1 aggttccactcagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncc 60 |||||||| |||||||||||||||||| |||||||||||||| || |||||||||| | Sbjct: 58 aggttcca-tcagtaccaggtggtggggcgcgcgctgccgacgcccggcgatgagcactc 116 Query: 61 caagatctaccgcatgaagctctgggccaccaacgaggtccgcgc 105 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117 caagatctaccgcatgaagctctgggccaccaacgaggtccgcgc 161
>gb|AY103621.1| Zea mays PCO154872 mRNA sequence Length = 805 Score = 147 bits (74), Expect = 7e-33 Identities = 98/105 (93%), Gaps = 1/105 (0%) Strand = Plus / Plus Query: 1 aggttccactcagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncc 60 |||||||| |||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 80 aggttcca-tcagtaccaggtggtgggtcgcgcgctgccgaccccaaccgatgagcaccc 138 Query: 61 caagatctaccgcatgaagctctgggccaccaacgaggtccgcgc 105 ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 139 caagatctaccgcatgaagctctgggccaccaacgaggttcgcgc 183
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 145 bits (73), Expect = 3e-32 Identities = 90/96 (93%) Strand = Plus / Minus Query: 10 tcagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncccaagatcta 69 |||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| Sbjct: 27261513 tcagtaccaggtggtggggcgcgcgctgccgacccccggcgatgagcaccccaagatcta 27261454 Query: 70 ccgcatgaagctctgggccaccaacgaggtccgcgc 105 ||| |||||||||||||||||||| ||||||||||| Sbjct: 27261453 ccggatgaagctctgggccaccaatgaggtccgcgc 27261418 Score = 95.6 bits (48), Expect = 2e-17 Identities = 83/95 (87%) Strand = Plus / Minus Query: 11 cagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncccaagatctac 70 ||||||||||||||||| | | |||||||| ||| ||| |||| |||||||||||| Sbjct: 31553852 cagtaccaggtggtggggaggggcctgccgacgccgaccgacgagcaccccaagatctac 31553793 Query: 71 cgcatgaagctctgggccaccaacgaggtccgcgc 105 ||||||||||||||||| ||||||||||||||||| Sbjct: 31553792 cgcatgaagctctgggctaccaacgaggtccgcgc 31553758
>dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05 Length = 182681 Score = 145 bits (73), Expect = 3e-32 Identities = 90/96 (93%) Strand = Plus / Minus Query: 10 tcagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncccaagatcta 69 |||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| Sbjct: 42030 tcagtaccaggtggtggggcgcgcgctgccgacccccggcgatgagcaccccaagatcta 41971 Query: 70 ccgcatgaagctctgggccaccaacgaggtccgcgc 105 ||| |||||||||||||||||||| ||||||||||| Sbjct: 41970 ccggatgaagctctgggccaccaatgaggtccgcgc 41935
>gb|BT017504.1| Zea mays clone EL01N0414H05.c mRNA sequence Length = 834 Score = 139 bits (70), Expect = 2e-30 Identities = 97/105 (92%), Gaps = 1/105 (0%) Strand = Plus / Plus Query: 1 aggttccactcagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncc 60 |||||||| |||||||||||||||||| |||||||||||||| || ||||| |||| || Sbjct: 63 aggttcca-tcagtaccaggtggtggggcgcgcgctgccgacgcccggcgacgagcaccc 121 Query: 61 caagatctaccgcatgaagctctgggccaccaacgaggtccgcgc 105 |||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 122 caagatctaccgcatgaagctctgggccaccaacgaagtccgcgc 166
>gb|BT016199.1| Zea mays clone Contig32 mRNA sequence Length = 732 Score = 139 bits (70), Expect = 2e-30 Identities = 97/105 (92%), Gaps = 1/105 (0%) Strand = Plus / Plus Query: 1 aggttccactcagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncc 60 |||||||| |||||||||||||||||| |||||||||||||| || ||||| |||| || Sbjct: 83 aggttcca-tcagtaccaggtggtggggcgcgcgctgccgacgcccggcgacgagcaccc 141 Query: 61 caagatctaccgcatgaagctctgggccaccaacgaggtccgcgc 105 |||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 142 caagatctaccgcatgaagctctgggccaccaacgaagtccgcgc 186
>gb|AY103768.1| Zea mays PCO155588 mRNA sequence Length = 818 Score = 139 bits (70), Expect = 2e-30 Identities = 97/105 (92%), Gaps = 1/105 (0%) Strand = Plus / Plus Query: 1 aggttccactcagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncc 60 |||||||| |||||||||||||||||| |||||||||||||| || ||||| |||| || Sbjct: 76 aggttcca-tcagtaccaggtggtggggcgcgcgctgccgacgcccggcgacgagcaccc 134 Query: 61 caagatctaccgcatgaagctctgggccaccaacgaggtccgcgc 105 |||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 135 caagatctaccgcatgaagctctgggccaccaacgaagtccgcgc 179
>ref|NM_191253.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 537 Score = 99.6 bits (50), Expect = 1e-18 Identities = 92/105 (87%), Gaps = 1/105 (0%) Strand = Plus / Plus Query: 1 aggttccactcagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncc 60 ||||||||| ||||||||||||||||| | | |||||||| ||| ||| |||| || Sbjct: 13 aggttccac-cagtaccaggtggtggggaggggcctgccgacgccgaccgacgagcaccc 71 Query: 61 caagatctaccgcatgaagctctgggccaccaacgaggtccgcgc 105 ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 72 caagatctaccgcatgaagctctgggctaccaacgaggtccgcgc 116
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 95.6 bits (48), Expect = 2e-17 Identities = 83/95 (87%) Strand = Plus / Minus Query: 11 cagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncccaagatctac 70 ||||||||||||||||| | | |||||||| ||| ||| |||| |||||||||||| Sbjct: 66875 cagtaccaggtggtggggaggggcctgccgacgccgaccgacgagcaccccaagatctac 66816 Query: 71 cgcatgaagctctgggccaccaacgaggtccgcgc 105 ||||||||||||||||| ||||||||||||||||| Sbjct: 66815 cgcatgaagctctgggctaccaacgaggtccgcgc 66781
>dbj|AP003237.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046E05 Length = 162776 Score = 95.6 bits (48), Expect = 2e-17 Identities = 83/95 (87%) Strand = Plus / Minus Query: 11 cagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncccaagatctac 70 ||||||||||||||||| | | |||||||| ||| ||| |||| |||||||||||| Sbjct: 147916 cagtaccaggtggtggggaggggcctgccgacgccgaccgacgagcaccccaagatctac 147857 Query: 71 cgcatgaagctctgggccaccaacgaggtccgcgc 105 ||||||||||||||||| ||||||||||||||||| Sbjct: 147856 cgcatgaagctctgggctaccaacgaggtccgcgc 147822
>dbj|AK121755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088C04, full insert sequence Length = 910 Score = 91.7 bits (46), Expect = 4e-16 Identities = 91/105 (86%), Gaps = 1/105 (0%) Strand = Plus / Plus Query: 1 aggttccactcagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncc 60 ||||||||| ||||||||||||||||| | | |||||||| | | ||| |||| || Sbjct: 130 aggttccac-cagtaccaggtggtggggaggggcctgccgacgcggaccgacgagcaccc 188 Query: 61 caagatctaccgcatgaagctctgggccaccaacgaggtccgcgc 105 ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 189 caagatctaccgcatgaagctctgggctaccaacgaggtccgcgc 233
>gb|BT016634.1| Zea mays clone Contig467 mRNA sequence Length = 859 Score = 56.0 bits (28), Expect = 2e-05 Identities = 76/91 (83%), Gaps = 1/91 (1%) Strand = Plus / Minus Query: 10 tcagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncccaagatcta 69 ||||||||||| | ||||||||||||||| ||| | ||||||| ||||||||||| Sbjct: 810 tcagtaccaggcagcgggtcgcgcgctgccagtccccgctgatgagcaccccaagatcta 751 Query: 70 ccgcatgaagctctgggccaccaacgaggtc 100 ||||||| |||| || || |||||||||||| Sbjct: 750 ccgcatggagct-tgcgctaccaacgaggtc 721
>gb|AY389632.1| Hyacinthus orientalis ribosomal protein L18A (RPL18) mRNA, complete cds Length = 710 Score = 56.0 bits (28), Expect = 2e-05 Identities = 72/87 (82%) Strand = Plus / Plus Query: 10 tcagtaccaggtggtgggtcgcgcgctgccgaccccgggcgatgagccncccaagatcta 69 |||||| ||||| ||||| || || ||||| ||||| |||||||| || ||||||| Sbjct: 27 tcagtatcaggttgtgggccgggcactgccaaccccctccgatgagcacccgaagatctt 86 Query: 70 ccgcatgaagctctgggccaccaacga 96 |||||||||||| ||||| |||||||| Sbjct: 87 ccgcatgaagctttgggcaaccaacga 113
>gb|AC146330.33| Medicago truncatula clone mth2-7g7, complete sequence Length = 117139 Score = 42.1 bits (21), Expect = 0.30 Identities = 36/41 (87%) Strand = Plus / Minus Query: 59 cccaagatctaccgcatgaagctctgggccaccaacgaggt 99 |||||||| || |||||||| || ||||| ||||||||||| Sbjct: 20641 cccaagatttatcgcatgaaactttgggcaaccaacgaggt 20601
>gb|U52111.3| Homo sapiens chromosome X clone Qc-7G6, QLL-F1720, QLL-C1335, Qc-8B7, Qc-11H12, Qc-7F6, QLL-E153, Qc-10E8, Qc-10B7 map q28, complete sequence Length = 247592 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 agtaccaggtggtgggtcgc 31 |||||||||||||||||||| Sbjct: 45396 agtaccaggtggtgggtcgc 45415
>ref|XM_938382.1| PREDICTED: Homo sapiens similar to ribosomal protein L18a (LOC347544), mRNA Length = 574 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 agtaccaggtggtgggtcgc 31 |||||||||||||||||||| Sbjct: 26 agtaccaggtggtgggtcgc 45
>ref|XM_293412.3| PREDICTED: Homo sapiens similar to ribosomal protein L18a (LOC347544), mRNA Length = 574 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 agtaccaggtggtgggtcgc 31 |||||||||||||||||||| Sbjct: 26 agtaccaggtggtgggtcgc 45
>gb|DQ235168.1| Solanum tuberosum clone 154B10 unknown mRNA Length = 904 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 tcagtaccaggtggtgggt 28 ||||||||||||||||||| Sbjct: 66 tcagtaccaggtggtgggt 84
>ref|NM_053502.1| Rattus norvegicus ATP-binding cassette, sub-family G (WHITE), member 1 (Abcg1), mRNA Length = 3527 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 ctgggccaccaacgaggtc 100 ||||||||||||||||||| Sbjct: 1688 ctgggccaccaacgaggtc 1670
>gb|AC020599.4|AC020599 Homo sapiens BAC clone RP11-440L13 from 4, complete sequence Length = 173821 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 75 tgaagctctgggccaccaa 93 ||||||||||||||||||| Sbjct: 21396 tgaagctctgggccaccaa 21414
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 38.2 bits (19), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 29 cgcgcgctgccgaccccgggcga 51 ||||||| ||||||||||||||| Sbjct: 3791802 cgcgcgcagccgaccccgggcga 3791780
>dbj|AK110247.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-162-G12, full insert sequence Length = 2977 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 tcgcgcgctgccgaccccg 46 ||||||||||||||||||| Sbjct: 1576 tcgcgcgctgccgaccccg 1594
>emb|AJ303374.1|RNO303374 Rattus norvegicus mRNA for ABC transporter white homologue (abc8 gene) Length = 3527 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 ctgggccaccaacgaggtc 100 ||||||||||||||||||| Sbjct: 1688 ctgggccaccaacgaggtc 1670 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 447,783 Number of Sequences: 3902068 Number of extensions: 447783 Number of successful extensions: 28130 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28027 Number of HSP's gapped (non-prelim): 98 length of query: 105 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 84 effective length of database: 17,151,101,840 effective search space: 1440692554560 effective search space used: 1440692554560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)