ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags36k21 |
|---|---|
| Clone Library Name | barley_pub |
>RPB5_MOUSE (Q80UW8) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) Length = 210 Score = 165 bits (417), Expect = 1e-40 Identities = 84/173 (48%), Positives = 114/173 (65%), Gaps = 5/173 (2%) Frame = +3 Query: 105 RLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETF-----HREDMLINKCKKNDP 269 RL +IR+T+M + DRGYLV + EL T +F+ ++G+ R D+ + +DP Sbjct: 9 RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDP 68 Query: 270 NDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLE 449 DQ++VFFP + KVG+K IK Y + M E ++RA++VVQQ +TP AK L ++ PK LE Sbjct: 69 TDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLE 128 Query: 450 VFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 F E+LINI EH LVPEH V+ EE LLARY L+E+QLPRIQ DP+AR Sbjct: 129 QFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVAR 181
>RPB5_PONPY (Q5R587) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) Length = 210 Score = 164 bits (416), Expect = 1e-40 Identities = 84/173 (48%), Positives = 113/173 (65%), Gaps = 5/173 (2%) Frame = +3 Query: 105 RLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETF-----HREDMLINKCKKNDP 269 RL +IR+T+M + DRGYLV + EL T +F+ ++G+ R D+ + +DP Sbjct: 9 RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDP 68 Query: 270 NDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLE 449 DQ++VFFP + KVG+K IK Y + M E ++RA++VVQQ +TP AK L ++ PK LE Sbjct: 69 TDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILE 128 Query: 450 VFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 F E+LINI EH LVPEH V+ EE LLARY L+E QLPRIQ DP+AR Sbjct: 129 QFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVAR 181
>RPB5_HUMAN (P19388) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) (XAP4) Length = 210 Score = 164 bits (416), Expect = 1e-40 Identities = 84/173 (48%), Positives = 113/173 (65%), Gaps = 5/173 (2%) Frame = +3 Query: 105 RLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETF-----HREDMLINKCKKNDP 269 RL +IR+T+M + DRGYLV + EL T +F+ ++G+ R D+ + +DP Sbjct: 9 RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDP 68 Query: 270 NDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLE 449 DQ++VFFP + KVG+K IK Y + M E ++RA++VVQQ +TP AK L ++ PK LE Sbjct: 69 TDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILE 128 Query: 450 VFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 F E+LINI EH LVPEH V+ EE LLARY L+E QLPRIQ DP+AR Sbjct: 129 QFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVAR 181
>RPB5_CAEEL (Q9N5K2) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 211 Score = 164 bits (416), Expect = 1e-40 Identities = 85/182 (46%), Positives = 118/182 (64%), Gaps = 5/182 (2%) Frame = +3 Query: 78 LVTEDVTVGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFH-----REDML 242 + +++ RL RIR+TV+ M+ DRGYLV + EL F+ +YG+ R D+ Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60 Query: 243 INKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQ 422 I +DP DQ++VFFP D K+G+K IK + M + +SRAI+VVQ +TP AK + Sbjct: 61 ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120 Query: 423 ELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPI 602 ++ PK LE F +AE+++NI EH LVPEH V+ EEK LLARY LK++QLPRIQ DP+ Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPV 180 Query: 603 AR 608 AR Sbjct: 181 AR 182
>RPB5_CANGA (Q6FQA6) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 117 bits (293), Expect = 3e-26 Identities = 66/181 (36%), Positives = 100/181 (55%), Gaps = 9/181 (4%) Frame = +3 Query: 90 DVTVGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDP 269 D ++ RL R RTV M+RDRGY + + EL +T DF+ KY ++ R + + N Sbjct: 6 DRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANPT 65 Query: 270 NDQ---------IYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQ 422 + ++V F ++ VG+K +K +V + ++ I + Q N+TP A + Sbjct: 66 EESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLVP 125 Query: 423 ELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPI 602 + P +E F +A +++NI H LVP+H L EEK LL RY LKE+QLPRIQ DP+ Sbjct: 126 SIPPAT-IETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQLPRIQRADPV 184 Query: 603 A 605 A Sbjct: 185 A 185
>RPB5_ASHGO (Q757H7) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 116 bits (290), Expect = 6e-26 Identities = 66/178 (37%), Positives = 99/178 (55%), Gaps = 9/178 (5%) Frame = +3 Query: 99 VGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKN----- 263 V RL R RTV M+RDRGY + + E+ ++ DF+ KY ++ R + + N Sbjct: 9 VSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPTEET 68 Query: 264 ---DPN-DQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELE 431 PN ++V F ++ VG+K +K +V + + I + Q +TP A L + Sbjct: 69 LKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSVA 128 Query: 432 PKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIA 605 P +E F + +++NI H LVP+H L++EEKK LL RY LKE+QLPRIQ DP+A Sbjct: 129 PAT-IETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQRMDPVA 185
>RPB5_YEAST (P20434) DNA-directed RNA polymerases I, II, and III 27 kDa| polypeptide (EC 2.7.7.6) (ABC27) Length = 215 Score = 114 bits (286), Expect = 2e-25 Identities = 63/178 (35%), Positives = 99/178 (55%), Gaps = 9/178 (5%) Frame = +3 Query: 99 VGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDPNDQ 278 + RL R RTV M++DRGY + + E+ + DF+ KY ++ R + + N + Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68 Query: 279 I---------YVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELE 431 I +V F ++ VG+K +K +V + + I V Q N+TP A + + Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128 Query: 432 PKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIA 605 P +E F +A +++NI H LVP+H L+++EK+ LL RY LKE+QLPRIQ DP+A Sbjct: 129 PAT-IETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVA 185
>RPB5_KLUMA (Q9P4B9) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 114 bits (286), Expect = 2e-25 Identities = 63/178 (35%), Positives = 98/178 (55%), Gaps = 9/178 (5%) Frame = +3 Query: 99 VGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDPNDQ 278 + RL R RTV M+RDRGY + + E+ ++ DF+ KY ++ + + + N + Sbjct: 9 ISRLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPTEES 68 Query: 279 I---------YVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELE 431 I +V F ++ VG+K +K +V + + I + Q +TP A L Sbjct: 69 IEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILPTAA 128 Query: 432 PKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIA 605 P + +E F +A +++NI H LVP+H L++ EKK LL RY LKE+QLPRIQ DP+A Sbjct: 129 PAV-IETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQLPRIQRMDPVA 185
>RPB5_SCHPO (Q09191) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 210 Score = 114 bits (285), Expect = 2e-25 Identities = 61/178 (34%), Positives = 99/178 (55%), Gaps = 4/178 (2%) Frame = +3 Query: 87 EDVTVGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKY---GETFHREDMLINKCK 257 E+ + R+ R +T ++ DRGY V + EL +T F+ + G R + Sbjct: 4 EEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKP 63 Query: 258 KNDPND-QIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEP 434 ND N IY+ F + VG+K ++ +V + IL+ ++TP A + + Sbjct: 64 SNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTG 123 Query: 435 KIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 + +E FQ++++++NI H LVP+H +L+ +EKK LL RY L+ETQLPRIQ+ DP+AR Sbjct: 124 QFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVAR 181
>RPB5_KLULA (Q6CJ62) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 114 bits (285), Expect = 2e-25 Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 9/182 (4%) Frame = +3 Query: 87 EDVTVGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKND 266 ++ + RL R +TV M+RDRGY + + E+ ++ DF+ KY ++ + + + N Sbjct: 5 QERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNP 64 Query: 267 PNDQI---------YVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFL 419 + I +V F ++ VG+K +K +V + + I + Q +TP A L Sbjct: 65 TEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKIL 124 Query: 420 QELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDP 599 P + +E F +A +++NI H LVP+H L+ EKK LL RY LKE+QLPRIQ DP Sbjct: 125 PTAAPAV-IETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQLPRIQRMDP 183 Query: 600 IA 605 +A Sbjct: 184 VA 185
>RPB5_DEBHA (Q6BIJ0) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 214 Score = 110 bits (275), Expect = 3e-24 Identities = 61/183 (33%), Positives = 104/183 (56%), Gaps = 10/183 (5%) Frame = +3 Query: 90 DVTVGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDP 269 D T+ RL R +TV M+RDRGY + + E+ M+ +F+ + ++ + + C + +P Sbjct: 5 DRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKL-MCFQANP 63 Query: 270 NDQ----------IYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFL 419 + ++V F ++ VG+K ++ + ++ + S I + Q ++TP A + Sbjct: 64 TAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSANKLI 123 Query: 420 QELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDP 599 + P +E FQ+ ++++NI H LVP+H LA +EKK LL RY LKE+QLPRIQ DP Sbjct: 124 PTVSPA-SIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLPRIQREDP 182 Query: 600 IAR 608 + R Sbjct: 183 VGR 185
>RPB5_YARLI (Q6CA26) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 212 Score = 98.6 bits (244), Expect = 1e-20 Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 10/178 (5%) Frame = +3 Query: 105 RLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDPNDQ-- 278 +L ++ RT +++DRGY + + E++++ F + + + + C P+ + Sbjct: 8 KLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKP-IKKKMCFMASPSPEAI 66 Query: 279 --------IYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEP 434 I+V F + V +K ++ + ++ K + ILV + N+TP A + + P Sbjct: 67 EKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANRLIPSVAP 126 Query: 435 KIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 ++ FQ+ ++L+NI +HVLVP H L+ EKK LL RY LKE+QLPRIQ DP+AR Sbjct: 127 AT-IDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQLPRIQREDPVAR 183
>RPOH_PYRHO (O74019) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 82 Score = 53.9 bits (128), Expect = 4e-07 Identities = 23/44 (52%), Positives = 33/44 (75%) Frame = +3 Query: 477 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 NI +HVLVPEH++L+ EEKK LL +Y + QLP+I+ +DP + Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLPQIRASDPAVK 51
>RPOH_PYRAB (Q9V116) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 82 Score = 53.9 bits (128), Expect = 4e-07 Identities = 23/44 (52%), Positives = 33/44 (75%) Frame = +3 Query: 477 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 NI +HVLVPEH++L+ EEKK LL +Y + QLP+I+ +DP + Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVK 51
>RPOH_PYRKO (Q5JE31) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 82 Score = 53.1 bits (126), Expect = 6e-07 Identities = 23/46 (50%), Positives = 36/46 (78%) Frame = +3 Query: 462 AEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDP 599 A+ NI +HVLVPEH++L+ EEK+ LL +Y ++ +QLP+I+ +DP Sbjct: 3 AKKEFNIFDHVLVPEHRILSEEEKEELLKKYRIRISQLPQIKASDP 48
>RPOH_PYRFU (Q8U0M2) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 82 Score = 52.0 bits (123), Expect = 1e-06 Identities = 23/44 (52%), Positives = 33/44 (75%) Frame = +3 Query: 477 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 +I +HVLVPEH+VL+ EEKK LL +Y + QLP+I+ +DP + Sbjct: 8 SIFDHVLVPEHRVLSEEEKKALLEKYKITLAQLPQIKASDPAVK 51
>RPOH_THECE (P31815) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 82 Score = 47.4 bits (111), Expect = 3e-05 Identities = 21/41 (51%), Positives = 31/41 (75%) Frame = +3 Query: 477 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDP 599 +I H LVPEH++L+ EE K LL RY ++ +QLP+I+ +DP Sbjct: 8 DIFAHELVPEHRILSEEETKELLRRYRIQISQLPQIKASDP 48
>RPOH_METJA (Q58443) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 45.4 bits (106), Expect = 1e-04 Identities = 17/43 (39%), Positives = 30/43 (69%) Frame = +3 Query: 474 INIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPI 602 + + +H+LVP+H+++ EE + +L RY +K QLP+I DP+ Sbjct: 1 MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPV 43
>RPOH_ARCFU (O28394) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 76 Score = 45.4 bits (106), Expect = 1e-04 Identities = 20/47 (42%), Positives = 33/47 (70%) Frame = +3 Query: 468 MLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 M +++H+LVP+H+VL+ EE + LL + + QLP+I+ DPIA+ Sbjct: 1 MKFKLQDHMLVPKHEVLSKEEAEELLKILGIGKEQLPKIKADDPIAK 47
>RPOH_THEVO (Q979F2) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 87 Score = 44.7 bits (104), Expect = 2e-04 Identities = 18/44 (40%), Positives = 30/44 (68%) Frame = +3 Query: 477 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 N+ +H LVPEH +++ EE+KT+L +++ LPRI DP+ + Sbjct: 5 NVLDHNLVPEHHIVSEEEEKTILKELGIEKEFLPRISPNDPVIK 48
>RPOH_METAC (Q8TRB4) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 44.3 bits (103), Expect = 3e-04 Identities = 14/44 (31%), Positives = 35/44 (79%) Frame = +3 Query: 477 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 ++ +H VP+H++++ E K++L++Y +++ QLP+I++ DP+++ Sbjct: 5 SLLDHESVPKHEIISEGELKSVLSKYLIEKEQLPKIKVQDPVSK 48
>RPOH_METMA (Q8PUQ8) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 43.9 bits (102), Expect = 4e-04 Identities = 14/44 (31%), Positives = 34/44 (77%) Frame = +3 Query: 477 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 ++ +H VP+H++++ E K++L++Y +++ QLP+I++ DP+ + Sbjct: 5 SLLDHEAVPKHEIMSEGELKSVLSKYFIEKEQLPKIKVQDPVCK 48
>RPOH_AERPE (Q9YAT3) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 90 Score = 43.5 bits (101), Expect = 5e-04 Identities = 21/43 (48%), Positives = 28/43 (65%) Frame = +3 Query: 480 IKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 I EH VPEH++L+ EE +L +K QLP+I + DPIAR Sbjct: 12 ILEHEYVPEHRLLSIEEAVQVLKMLGIKPWQLPKISVNDPIAR 54
>RPOH_HALSA (P15740) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 75 Score = 42.7 bits (99), Expect = 8e-04 Identities = 18/43 (41%), Positives = 28/43 (65%) Frame = +3 Query: 471 LINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDP 599 ++++ +H LVPEH VL E +LA Y + T+LP+I+ DP Sbjct: 1 MVDVSQHELVPEHTVLDEETLDGVLADYDIDRTELPKIKYKDP 43
>RPOH_SULTO (Q976A3) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 84 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/49 (40%), Positives = 33/49 (67%) Frame = +3 Query: 462 AEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 +++ I+ +H LVP+H+VL+ EE +L +K QLP I+ +DPIA+ Sbjct: 5 SKIKIDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWIRASDPIAK 53
>RPOH_SULAC (P11521) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 84 Score = 41.6 bits (96), Expect = 0.002 Identities = 19/45 (42%), Positives = 29/45 (64%) Frame = +3 Query: 474 INIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 I+I H LVP+H++L EE L+ +K QLP I+ +DP+A+ Sbjct: 9 IDISNHELVPKHEILQLEEAYKLVKELGIKPEQLPWIRASDPVAK 53
>RPOH_METTH (O27122) DNA-directed RNA polymerase subunit H (EC 2.7.7.6) (RPB5)| Length = 77 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/43 (44%), Positives = 26/43 (60%) Frame = +3 Query: 480 IKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 I +H LVPEH +L E K +L QLP+I+ TDP+A+ Sbjct: 5 ILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAK 47
>RPOH_METVA (P41559) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 40.8 bits (94), Expect = 0.003 Identities = 15/43 (34%), Positives = 28/43 (65%) Frame = +3 Query: 474 INIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPI 602 + + H +VPEH+++ +E LL +Y +K Q P++ I+DP+ Sbjct: 1 MKVSSHEMVPEHEIIPGDEIPFLLEKYGIKIQQFPKLLISDPL 43
>RPOH_METMP (P61519) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 78 Score = 40.8 bits (94), Expect = 0.003 Identities = 16/43 (37%), Positives = 27/43 (62%) Frame = +3 Query: 474 INIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPI 602 + I H +VP H+++ EE LL +Y++K Q P++ TDP+ Sbjct: 1 MKISSHEMVPTHEIIPREEIPLLLEKYSIKMQQFPKLLDTDPL 43
>RPOH_THEAC (Q03588) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 87 Score = 40.0 bits (92), Expect = 0.005 Identities = 16/41 (39%), Positives = 26/41 (63%) Frame = +3 Query: 477 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDP 599 N+ +H LVPEH ++ EE+K +L +++ LP+I DP Sbjct: 5 NVLDHNLVPEHHIVPEEEEKNILKELNIEKEFLPKISPNDP 45
>RPOH_SULSO (Q980Q9) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 84 Score = 38.1 bits (87), Expect = 0.020 Identities = 18/45 (40%), Positives = 29/45 (64%) Frame = +3 Query: 474 INIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 I+ + H LVP+H+VL +E +L ++ QLP I+ +DP+AR Sbjct: 9 IDPRIHYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVAR 53
>RPOH_METKA (Q8TXI5) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 92 Score = 37.0 bits (84), Expect = 0.045 Identities = 18/49 (36%), Positives = 33/49 (67%), Gaps = 1/49 (2%) Frame = +3 Query: 459 DAEMLINIKEHVLVPEHQVLANEEK-KTLLARYTLKETQLPRIQITDPI 602 D ++++N HVLVP+H+V+ +EE+ + +L +++ LPRI DP+ Sbjct: 6 DPDVVLN---HVLVPKHEVIDDEEEIEKILEELGVEKDDLPRIHTNDPV 51
>SMRCD_MOUSE (Q04692) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A containing DEAD/H box 1 (EC 3.6.1.-) (ATP-dependent helicase SMARCAD1) (Enhancer trap locus homolog 1) (Etl-1) Length = 1021 Score = 33.5 bits (75), Expect = 0.50 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 11/101 (10%) Frame = +3 Query: 243 INKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNA----EKVSRAILVVQQNLTPFAK 410 I C ++ +Q+Y N K + +++K EM N K++ L+ +Q TP Sbjct: 733 IELCAMSEKQEQLYSGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHPLLHRQYYTPEKL 792 Query: 411 SFLQELEPK--IHLE-----VFQDAEMLINIKEHVLVPEHQ 512 + +L K H E +F+D E++ + + HVL ++Q Sbjct: 793 KEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYQ 833
>TERT_EUPAE (O00939) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase| catalytic subunit) (Telomerase subunit P123) Length = 1031 Score = 33.1 bits (74), Expect = 0.65 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%) Frame = +3 Query: 165 VEHELSMTRRDFQRKYGETF-HREDMLINKCKKNDPNDQIYVFFPNDEKVG------MKH 323 +E+ ++ TR + + Y E F + D NKC N+ Y P D G K Sbjct: 330 IENLINKTREEKSKYYEELFSYTTD---NKCVTQFINEFFYNILPKDFLTGRNRKNFQKK 386 Query: 324 IKKYVEMMNAEKVSRAILVVQQN 392 +KKYVE+ E + + +L+ + N Sbjct: 387 VKKYVELNKHELIHKNLLLEKIN 409
>RPOH_PYRAE (Q8ZYR0) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)| Length = 75 Score = 32.7 bits (73), Expect = 0.85 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = +3 Query: 498 VPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIAR 608 V E V+ EE K LL R L+ QLP I+ +DP+A+ Sbjct: 8 VKEVTVIPREEAKELLKRMKLRPWQLPWIRASDPLAQ 44
>SMRCD_HUMAN (Q9H4L7) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A containing DEAD/H box 1 (EC 3.6.1.-) (ATP-dependent helicase 1) (hHEL1) Length = 1026 Score = 31.2 bits (69), Expect = 2.5 Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 11/105 (10%) Frame = +3 Query: 243 INKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNA----EKVSRAILVVQQNLTPFAK 410 I C ++ +Q+Y+ N K + +++K EM N K++ L+ +Q T Sbjct: 738 IELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKL 797 Query: 411 SFLQELEPK--IHLE-----VFQDAEMLINIKEHVLVPEHQVLAN 524 + +L K H E +F+D E++ + + HVL +++ + N Sbjct: 798 KEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINN 842
>SEM6D_PONPY (Q5R7F5) Semaphorin-6D precursor| Length = 1017 Score = 31.2 bits (69), Expect = 2.5 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = +2 Query: 185 DPPRLPAQV---RRDLPPRGHAHQQVQEERPQRPDLRVLP 295 D P+L + + R++LPP G V + R Q P+L LP Sbjct: 677 DSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALP 716
>SEM6D_HUMAN (Q8NFY4) Semaphorin-6D precursor| Length = 1073 Score = 31.2 bits (69), Expect = 2.5 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = +2 Query: 185 DPPRLPAQV---RRDLPPRGHAHQQVQEERPQRPDLRVLP 295 D P+L + + R++LPP G V + R Q P+L LP Sbjct: 733 DSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALP 772
>CD36_MESAU (P70110) Platelet glycoprotein 4 (Platelet glycoprotein IV) (GPIV)| (GPIIIB) (CD36 antigen) (PAS IV) (PAS-4 protein) Length = 471 Score = 30.8 bits (68), Expect = 3.2 Identities = 21/87 (24%), Positives = 41/87 (47%) Frame = +3 Query: 243 INKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQ 422 I+KCK+ P +Y+ P+ I + +E +N + + + +T F F + Sbjct: 329 ISKCKQGRP---VYISLPHFLHAS-PDISEPIEGLNPNEEEHRTYLDVEPITGFTLQFAK 384 Query: 423 ELEPKIHLEVFQDAEMLINIKEHVLVP 503 L+ I ++ + E L N+K + +VP Sbjct: 385 RLQVNILVKPARKIEALKNLKRNYIVP 411
>CF152_HUMAN (Q86VQ0) Protein C6orf152| Length = 697 Score = 30.4 bits (67), Expect = 4.2 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +2 Query: 200 PAQVRRDLPPRGHAHQQVQEERPQRPDLRVLPQRR 304 PA VRR P R + QV + P++P + LP R+ Sbjct: 43 PASVRRKNPKRQTSDGQVHHQAPRKPSPKGLPNRK 77
>BTBD7_MOUSE (Q8CFE5) BTB/POZ domain-containing protein 7| Length = 1130 Score = 30.4 bits (67), Expect = 4.2 Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 16/110 (14%) Frame = +2 Query: 191 PRLPAQVRRDLPPR--GHAHQQ--------VQEERPQRPDLRVLPQRREGGDEAHQEVR* 340 P+ RR+ PP GH H+Q V E+ PQRPD AH R Sbjct: 995 PKKQEDPRREYPPSPDGHPHRQKREPIRLDVVEQPPQRPDFPSAASENASHGPAHVRAR- 1053 Query: 341 NDERRESLKGYIGCATEPHPIC--EIVPPRTGAK----DPLGGFPGRRNA 472 + G H C E++ R+ + +PLG +RNA Sbjct: 1054 TAVETDLTFGLTSNRPPSHSACSSEVLEERSSRRLTDSEPLGHGAHQRNA 1103
>STAP2_MOUSE (Q8R0L1) Signal-transducing adaptor protein 2 (STAP-2)| Length = 411 Score = 30.0 bits (66), Expect = 5.5 Identities = 23/84 (27%), Positives = 36/84 (42%) Frame = +2 Query: 191 PRLPAQVRRDLPPRGHAHQQVQEERPQRPDLRVLPQRREGGDEAHQEVR*NDERRESLKG 370 P LPA V + LPP + +++ PQ P L LP DE + + E + Sbjct: 278 PALPANVLKPLPPVPVSVSSQEDKLPQLPPLPQLPDT----DENYVTPIEDSPAAEYMNQ 333 Query: 371 YIGCATEPHPICEIVPPRTGAKDP 442 + +++ P+ P R AK P Sbjct: 334 DVSLSSQAVPLKPKKPARLPAKPP 357
>GLMU_NITOC (Q3J6N3) Bifunctional protein glmU [Includes:| UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)] Length = 453 Score = 30.0 bits (66), Expect = 5.5 Identities = 17/66 (25%), Positives = 30/66 (45%) Frame = +3 Query: 324 IKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVP 503 + K +E +A R I V +T +L+++ PK+ Q L +I EH + Sbjct: 147 VSKIIEEADASPEQRRIREVNTGITAIEARYLKQIAPKLSNNNAQGEYYLTDIIEHAVAS 206 Query: 504 EHQVLA 521 +V+A Sbjct: 207 GEKVVA 212
>MCE1_YARLI (Q6C783) mRNA capping enzyme alpha subunit (mRNA| guanylyltransferase) (EC 2.7.7.50) (GTP--RNA guanylyltransferase) (GTase) Length = 391 Score = 29.6 bits (65), Expect = 7.2 Identities = 21/88 (23%), Positives = 39/88 (44%) Frame = +3 Query: 177 LSMTRRDFQRKYGETFHREDMLINKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNAE 356 L T RD R YGE + ++ N +P ++ V D+K ++++ + NA Sbjct: 271 LVWTGRDGSRPYGELYLTDEEWDNLKALEEPLEERVVECIKDDKKRWRYLRFRDDKTNAN 330 Query: 357 KVSRAILVVQQNLTPFAKSFLQELEPKI 440 ++ V+ P ++ L + PKI Sbjct: 331 YITTVEKVIDSIDDPVSEKNLLDAAPKI 358
>SOML_ACITR (O93262) Somatolactin precursor (SL)| Length = 232 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 3/64 (4%) Frame = +3 Query: 105 RLVRIRRTVMHMLR---DRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDPND 275 +L + + ++ ++R D G L V+H+ ++TR D Q + E+ R+ ++ KK+ Sbjct: 153 KLSSLEQGIVELIRKMLDEGLLAVDHQQTLTRFDVQPEVVESILRDYAVLTCFKKDAHKM 212 Query: 276 QIYV 287 ++++ Sbjct: 213 EVFL 216 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,711,969 Number of Sequences: 219361 Number of extensions: 1396254 Number of successful extensions: 5172 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 4957 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5145 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
