ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags36k13 |
|---|---|
| Clone Library Name | barley_pub |
>EFG_IDILO (Q5QWB4) Elongation factor G (EF-G)| Length = 707 Score = 32.7 bits (73), Expect = 0.87 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Frame = +1 Query: 169 LEWYKNFKTSGLPVR---VLCYHQGKWKDFPEHVVNLVQQDFQLKRPITNAVFKNQQVLL 339 ++W + + G+ + C+ QG K FPEH VN++ + T V ++ +VL Sbjct: 50 MDWMEQEQERGITITSAATTCFWQGMDKQFPEHRVNIIDTPGHV--DFTIEVERSLRVLD 107 Query: 340 DFMHMVCIDSAVTTNKPIAW 399 + ++C S V W Sbjct: 108 GAVVVLCASSGVQPQTETVW 127
>CXCR2_RABIT (P35344) High affinity interleukin-8 receptor B (IL-8R B) (CXCR-2)| (GRO/MGSA receptor) (CD182 antigen) Length = 358 Score = 31.6 bits (70), Expect = 1.9 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = -2 Query: 159 STEGHFRLLKETRTISMLRDLSRIICASSFHSRLMFPLAVSSFQNIFIQPHSS 1 S + + ++ TRT+ R L + IC S + L+ L + F+N P+SS Sbjct: 139 SVDRYLAIVHATRTMIQKRHLVKFICLSMWGVSLILSLPILLFRNAIFPPNSS 191
>IL16_CERAE (O62674) Interleukin-16 precursor (IL-16) (Lymphocyte| chemoattractant factor) (LCF) Length = 631 Score = 31.6 bits (70), Expect = 1.9 Identities = 22/78 (28%), Positives = 36/78 (46%) Frame = +1 Query: 349 HMVCIDSAVTTNKPIAWIDVHGKRFFPDLCAGLITSKPSQHGESDPSGKSEAGECAGTLI 528 H+ S+ + + I+ + G PD A ++ +PS + P GK E G +G L+ Sbjct: 128 HIRASSSSSSIKQRISSFETFGSSQLPDKGAQRLSLQPSSGEAAKPLGKHEGGRFSG-LL 186 Query: 529 LTAAAESLSSDSVDAVLP 582 AA +L + VLP Sbjct: 187 GRGAAPTLVPQQPEQVLP 204
>BODG_CAEEL (Q19000) Probable gamma-butyrobetaine dioxygenase (EC 1.14.11.1)| (Gamma-butyrobetaine,2-oxoglutarate dioxygenase) (Gamma-butyrobetaine hydroxylase) (Gamma-BBH) Length = 421 Score = 31.2 bits (69), Expect = 2.5 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +1 Query: 247 FPEHVVNLVQQDFQLKRPITNAVFKNQQVLLDFMHMVCID 366 FPE + + +LK+ KN+QV+ DF+ VCID Sbjct: 126 FPEQTWGKAEIEGKLKKFSHEEFMKNEQVVHDFLQAVCID 165
>DNAK_BRUSU (Q8FXX2) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 637 Score = 30.8 bits (68), Expect = 3.3 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 Query: 394 AWIDVHGKRFFPDLCAGLITSKPSQHGES 480 AW++VHGK++ P + +I K + ES Sbjct: 101 AWVEVHGKKYSPSQISAMILQKMKETAES 129
>DNAK_BRUOV (Q05981) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 637 Score = 30.8 bits (68), Expect = 3.3 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 Query: 394 AWIDVHGKRFFPDLCAGLITSKPSQHGES 480 AW++VHGK++ P + +I K + ES Sbjct: 101 AWVEVHGKKYSPSQISAMILQKMKETAES 129
>DNAK_BRUME (Q8YE76) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 637 Score = 30.8 bits (68), Expect = 3.3 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 Query: 394 AWIDVHGKRFFPDLCAGLITSKPSQHGES 480 AW++VHGK++ P + +I K + ES Sbjct: 101 AWVEVHGKKYSPSQISAMILQKMKETAES 129
>DNAK_BRUAB (Q57AD7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 637 Score = 30.8 bits (68), Expect = 3.3 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 Query: 394 AWIDVHGKRFFPDLCAGLITSKPSQHGES 480 AW++VHGK++ P + +I K + ES Sbjct: 101 AWVEVHGKKYSPSQISAMILQKMKETAES 129
>TAO1A_XENLA (Q6NU21) Serine/threonine-protein kinase TAO1-A (EC 2.7.11.1)| (Thousand and one amino acid protein 1-A) Length = 1001 Score = 30.8 bits (68), Expect = 3.3 Identities = 26/113 (23%), Positives = 44/113 (38%) Frame = +1 Query: 235 KWKDFPEHVVNLVQQDFQLKRPITNAVFKNQQVLLDFMHMVCIDSAVTTNKPIAWIDVHG 414 +W DF + V+ Q RP ++ + KN VLL+ V ID T + +D Sbjct: 249 EWSDFFRNFVDSCLQKIPQDRPTSDELLKNMFVLLERPETVLIDLIQRTKDAVRELDNLQ 308 Query: 415 KRFFPDLCAGLITSKPSQHGESDPSGKSEAGECAGTLILTAAAESLSSDSVDA 573 R L + P+ + + GT+ + +S+ S S+ A Sbjct: 309 YRKMKKLLFQEAHNGPAVETHEEEEEQEHGVGRTGTVNSIGSNQSIPSMSISA 361
>NIFD_METTL (P20620) Nitrogenase molybdenum-iron protein alpha chain (EC| 1.18.6.1) (Nitrogenase component I) (Dinitrogenase) Length = 478 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 Query: 499 EAGECAGTLILTAAAESLSSDSVDAVLPHVNKANK 603 E E +GT I T +L D+VDA+ ++ KA K Sbjct: 121 EFPEASGTFIYTTCPTALIGDNVDAIARNIEKATK 155
>IL16_MACMU (O62675) Interleukin-16 precursor (IL-16) (Lymphocyte| chemoattractant factor) (LCF) Length = 630 Score = 30.0 bits (66), Expect = 5.7 Identities = 21/72 (29%), Positives = 34/72 (47%) Frame = +1 Query: 367 SAVTTNKPIAWIDVHGKRFFPDLCAGLITSKPSQHGESDPSGKSEAGECAGTLILTAAAE 546 S+ + + I+ + G PD A ++ +PS + P GK E G +G L+ AA Sbjct: 133 SSSSIKQRISSFETFGSSQLPDKGAQRLSLQPSSGEAAKPLGKHEGGRFSG-LLGRGAAP 191 Query: 547 SLSSDSVDAVLP 582 +L + VLP Sbjct: 192 TLVPQQPEQVLP 203
>IL16_MACFA (O62676) Interleukin-16 precursor (IL-16) (Lymphocyte| chemoattractant factor) (LCF) Length = 630 Score = 30.0 bits (66), Expect = 5.7 Identities = 21/72 (29%), Positives = 34/72 (47%) Frame = +1 Query: 367 SAVTTNKPIAWIDVHGKRFFPDLCAGLITSKPSQHGESDPSGKSEAGECAGTLILTAAAE 546 S+ + + I+ + G PD A ++ +PS + P GK E G +G L+ AA Sbjct: 133 SSSSIKQRISSFETFGSSQLPDKGAQRLSLQPSSGEAAKPLGKHEGGRFSG-LLGRGAAP 191 Query: 547 SLSSDSVDAVLP 582 +L + VLP Sbjct: 192 TLVPQQPEQVLP 203
>TPIS_DROYA (O77458) Triosephosphate isomerase (EC 5.3.1.1) (TIM)| (Triose-phosphate isomerase) Length = 247 Score = 30.0 bits (66), Expect = 5.7 Identities = 20/57 (35%), Positives = 29/57 (50%) Frame = +1 Query: 94 AEVSQHADGSGLLKKSKMTFCAGHILEWYKNFKTSGLPVRVLCYHQGKWKDFPEHVV 264 AE ++HA GL K+ C G LE + KT+ + R +C + K KD+ VV Sbjct: 109 AEKAEHALAEGL----KVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVV 161
>TPIS_DROSI (Q7JNS1) Triosephosphate isomerase (EC 5.3.1.1) (TIM)| (Triose-phosphate isomerase) Length = 247 Score = 30.0 bits (66), Expect = 5.7 Identities = 20/57 (35%), Positives = 29/57 (50%) Frame = +1 Query: 94 AEVSQHADGSGLLKKSKMTFCAGHILEWYKNFKTSGLPVRVLCYHQGKWKDFPEHVV 264 AE ++HA GL K+ C G LE + KT+ + R +C + K KD+ VV Sbjct: 109 AEKAEHALAEGL----KVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVV 161
>TPIS_DROME (P29613) Triosephosphate isomerase (EC 5.3.1.1) (TIM)| (Triose-phosphate isomerase) Length = 348 Score = 30.0 bits (66), Expect = 5.7 Identities = 20/57 (35%), Positives = 29/57 (50%) Frame = +1 Query: 94 AEVSQHADGSGLLKKSKMTFCAGHILEWYKNFKTSGLPVRVLCYHQGKWKDFPEHVV 264 AE ++HA GL K+ C G LE + KT+ + R +C + K KD+ VV Sbjct: 210 AEKAEHALAEGL----KVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVV 262 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.132 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,507,289 Number of Sequences: 219361 Number of extensions: 1844829 Number of successful extensions: 4797 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4622 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4793 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
