ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags36k13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470455.1| Oryza sativa (japonica cultivar-group), mRNA 123 7e-25
2ref|XM_470454.1| Oryza sativa (japonica cultivar-group), mRNA 123 7e-25
3gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome... 123 7e-25
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 123 7e-25
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
6dbj|AK072499.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 7e-25
7dbj|AK060748.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 7e-25
8ref|XM_741745.1| Aspergillus fumigatus Af293 hypothetical protei... 42 2.1
9gb|AC006035.2| Homo sapiens BAC clone RP11-196O16 from 7, comple... 42 2.1
10gb|AC144547.6| Homo sapiens 12 BAC RP13-653N12 (Roswell Park Can... 42 2.1
11emb|CR759739.2| Human DNA sequence from clone XX-NCIH2171_18I22,... 42 2.1
12gb|AC090577.4| Homo sapiens chromosome 8, clone RP11-575N24, com... 42 2.1
13gb|AC150428.3| Branchiostoma floridae clone CH302-86J11, complet... 40 8.4
14gb|AC153878.11| Mus musculus 6 BAC RP23-229B22 (Roswell Park Can... 40 8.4
15gb|AC146001.2| Pan troglodytes BAC clone RP43-148A6 from 7, comp... 40 8.4
16gb|AC007164.3| Homo sapiens BAC clone RP11-304A10 from 7, comple... 40 8.4
17gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 40 8.4
18emb|AL162615.13| Human DNA sequence from clone RP5-1041C10 on ch... 40 8.4
19gb|AC158952.4| Mus musculus chromosome 8, clone RP23-265B15, com... 40 8.4
20gb|AY838862.1| Ninoe nigripes 28S ribosomal RNA gene, partial se... 40 8.4
21gb|AC116482.11| Mus musculus chromosome 8, clone RP23-423D8, com... 40 8.4
22gb|AC019185.8| Homo sapiens BAC clone RP11-299P7 from 2, complet... 40 8.4
23gb|AC019178.7| Homo sapiens BAC clone RP11-235L22 from 2, comple... 40 8.4
24gb|AC120001.13| Mus musculus chromosome 8, clone RP24-143B14, co... 40 8.4
25emb|AL135978.4|CNS01DVN Human chromosome 14 DNA sequence BAC R-1... 40 8.4
26emb|AL121673.41|HSA305P22 Human DNA sequence from clone RP11-305... 40 8.4
27gb|AC153922.6| Mus musculus 6 BAC RP23-81P16 (Roswell Park Cance... 40 8.4 
>ref|XM_470455.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3584

 Score =  123 bits (62), Expect = 7e-25
 Identities = 179/218 (82%)
 Strand = Plus / Plus

                                                                        
Query: 244  gactttccagagcacgttgtgaatctggtacagcaggacttccagttgaagaggccaatt 303
            ||||| |||||| | ||||| |||  ||||||||||  ||||||||||||||||||||||
Sbjct: 2052 gacttcccagaggatgttgtcaattcggtacagcagagcttccagttgaagaggccaatt 2111

                                                                        
Query: 304  actaatgctgtattcaagaaccagcaagttctgttggactttatgcacatggtctgcatt 363
            |||| ||| |||||| |||||  |||  | ||||||||||| ||||| ||||| ||  | 
Sbjct: 2112 actagtgcagtattccagaacaggcacatcctgttggacttcatgcagatggtttgttta 2171

                                                                        
Query: 364  gattctgcggtgaccacaaacaagccaatagcatggattgatgttcatggtaaacgcttc 423
            ||||||| | || ||| || ||||||||| || ||||| |||| |||||||||| |||||
Sbjct: 2172 gattctgtgatggccataagcaagccaattgcttggatcgatgatcatggtaaatgcttc 2231

                                                  
Query: 424  tttccagatttatgtgctggactgataacatctaaacc 461
            | ||| |||| |||||||||| | ||| ||||| ||||
Sbjct: 2232 tctccggattcatgtgctggagtaataccatctgaacc 2269



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 536  ctgcagctgaaagcttgagttcagattctgttgatgcagt 575
            |||||||||||||||  |||||||  ||| ||||||||||
Sbjct: 2353 ctgcagctgaaagctcaagttcagcgtcttttgatgcagt 2392
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>ref|XM_470454.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2474

 Score =  123 bits (62), Expect = 7e-25
 Identities = 179/218 (82%)
 Strand = Plus / Plus

                                                                       
Query: 244 gactttccagagcacgttgtgaatctggtacagcaggacttccagttgaagaggccaatt 303
           ||||| |||||| | ||||| |||  ||||||||||  ||||||||||||||||||||||
Sbjct: 706 gacttcccagaggatgttgtcaattcggtacagcagagcttccagttgaagaggccaatt 765

                                                                       
Query: 304 actaatgctgtattcaagaaccagcaagttctgttggactttatgcacatggtctgcatt 363
           |||| ||| |||||| |||||  |||  | ||||||||||| ||||| ||||| ||  | 
Sbjct: 766 actagtgcagtattccagaacaggcacatcctgttggacttcatgcagatggtttgttta 825

                                                                       
Query: 364 gattctgcggtgaccacaaacaagccaatagcatggattgatgttcatggtaaacgcttc 423
           ||||||| | || ||| || ||||||||| || ||||| |||| |||||||||| |||||
Sbjct: 826 gattctgtgatggccataagcaagccaattgcttggatcgatgatcatggtaaatgcttc 885

                                                 
Query: 424 tttccagatttatgtgctggactgataacatctaaacc 461
           | ||| |||| |||||||||| | ||| ||||| ||||
Sbjct: 886 tctccggattcatgtgctggagtaataccatctgaacc 923



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 536  ctgcagctgaaagcttgagttcagattctgttgatgcagt 575
            |||||||||||||||  |||||||  ||| ||||||||||
Sbjct: 1007 ctgcagctgaaagctcaagttcagcgtcttttgatgcagt 1046
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>gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006O08
             map S15179S, complete sequence
          Length = 166005

 Score =  123 bits (62), Expect = 7e-25
 Identities = 179/218 (82%)
 Strand = Plus / Minus

                                                                         
Query: 244   gactttccagagcacgttgtgaatctggtacagcaggacttccagttgaagaggccaatt 303
             ||||| |||||| | ||||| |||  ||||||||||  ||||||||||||||||||||||
Sbjct: 98943 gacttcccagaggatgttgtcaattcggtacagcagagcttccagttgaagaggccaatt 98884

                                                                         
Query: 304   actaatgctgtattcaagaaccagcaagttctgttggactttatgcacatggtctgcatt 363
             |||| ||| |||||| |||||  |||  | ||||||||||| ||||| ||||| ||  | 
Sbjct: 98883 actagtgcagtattccagaacaggcacatcctgttggacttcatgcagatggtttgttta 98824

                                                                         
Query: 364   gattctgcggtgaccacaaacaagccaatagcatggattgatgttcatggtaaacgcttc 423
             ||||||| | || ||| || ||||||||| || ||||| |||| |||||||||| |||||
Sbjct: 98823 gattctgtgatggccataagcaagccaattgcttggatcgatgatcatggtaaatgcttc 98764

                                                   
Query: 424   tttccagatttatgtgctggactgataacatctaaacc 461
             | ||| |||| |||||||||| | ||| ||||| ||||
Sbjct: 98763 tctccggattcatgtgctggagtaataccatctgaacc 98726



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 536   ctgcagctgaaagcttgagttcagattctgttgatgcagt 575
             |||||||||||||||  |||||||  ||| ||||||||||
Sbjct: 98642 ctgcagctgaaagctcaagttcagcgtcttttgatgcagt 98603
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  123 bits (62), Expect = 7e-25
 Identities = 179/218 (82%)
 Strand = Plus / Minus

                                                                            
Query: 244      gactttccagagcacgttgtgaatctggtacagcaggacttccagttgaagaggccaatt 303
                ||||| |||||| | ||||| |||  ||||||||||  ||||||||||||||||||||||
Sbjct: 35701165 gacttcccagaggatgttgtcaattcggtacagcagagcttccagttgaagaggccaatt 35701106

                                                                            
Query: 304      actaatgctgtattcaagaaccagcaagttctgttggactttatgcacatggtctgcatt 363
                |||| ||| |||||| |||||  |||  | ||||||||||| ||||| ||||| ||  | 
Sbjct: 35701105 actagtgcagtattccagaacaggcacatcctgttggacttcatgcagatggtttgttta 35701046

                                                                            
Query: 364      gattctgcggtgaccacaaacaagccaatagcatggattgatgttcatggtaaacgcttc 423
                ||||||| | || ||| || ||||||||| || ||||| |||| |||||||||| |||||
Sbjct: 35701045 gattctgtgatggccataagcaagccaattgcttggatcgatgatcatggtaaatgcttc 35700986

                                                      
Query: 424      tttccagatttatgtgctggactgataacatctaaacc 461
                | ||| |||| |||||||||| | ||| ||||| ||||
Sbjct: 35700985 tctccggattcatgtgctggagtaataccatctgaacc 35700948



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 536      ctgcagctgaaagcttgagttcagattctgttgatgcagt 575
                |||||||||||||||  |||||||  ||| ||||||||||
Sbjct: 35700864 ctgcagctgaaagctcaagttcagcgtcttttgatgcagt 35700825
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  123 bits (62), Expect = 7e-25
 Identities = 179/218 (82%)
 Strand = Plus / Minus

                                                                            
Query: 244      gactttccagagcacgttgtgaatctggtacagcaggacttccagttgaagaggccaatt 303
                ||||| |||||| | ||||| |||  ||||||||||  ||||||||||||||||||||||
Sbjct: 35791238 gacttcccagaggatgttgtcaattcggtacagcagagcttccagttgaagaggccaatt 35791179

                                                                            
Query: 304      actaatgctgtattcaagaaccagcaagttctgttggactttatgcacatggtctgcatt 363
                |||| ||| |||||| |||||  |||  | ||||||||||| ||||| ||||| ||  | 
Sbjct: 35791178 actagtgcagtattccagaacaggcacatcctgttggacttcatgcagatggtttgttta 35791119

                                                                            
Query: 364      gattctgcggtgaccacaaacaagccaatagcatggattgatgttcatggtaaacgcttc 423
                ||||||| | || ||| || ||||||||| || ||||| |||| |||||||||| |||||
Sbjct: 35791118 gattctgtgatggccataagcaagccaattgcttggatcgatgatcatggtaaatgcttc 35791059

                                                      
Query: 424      tttccagatttatgtgctggactgataacatctaaacc 461
                | ||| |||| |||||||||| | ||| ||||| ||||
Sbjct: 35791058 tctccggattcatgtgctggagtaataccatctgaacc 35791021



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 536      ctgcagctgaaagcttgagttcagattctgttgatgcagt 575
                |||||||||||||||  |||||||  ||| ||||||||||
Sbjct: 35790937 ctgcagctgaaagctcaagttcagcgtcttttgatgcagt 35790898
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>dbj|AK072499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125E22, full
            insert sequence
          Length = 3913

 Score =  123 bits (62), Expect = 7e-25
 Identities = 179/218 (82%)
 Strand = Plus / Plus

                                                                        
Query: 244  gactttccagagcacgttgtgaatctggtacagcaggacttccagttgaagaggccaatt 303
            ||||| |||||| | ||||| |||  ||||||||||  ||||||||||||||||||||||
Sbjct: 2164 gacttcccagaggatgttgtcaattcggtacagcagagcttccagttgaagaggccaatt 2223

                                                                        
Query: 304  actaatgctgtattcaagaaccagcaagttctgttggactttatgcacatggtctgcatt 363
            |||| ||| |||||| |||||  |||  | ||||||||||| ||||| ||||| ||  | 
Sbjct: 2224 actagtgcagtattccagaacaggcacatcctgttggacttcatgcagatggtttgttta 2283

                                                                        
Query: 364  gattctgcggtgaccacaaacaagccaatagcatggattgatgttcatggtaaacgcttc 423
            ||||||| | || ||| || ||||||||| || ||||| |||| |||||||||| |||||
Sbjct: 2284 gattctgtgatggccataagcaagccaattgcttggatcgatgatcatggtaaatgcttc 2343

                                                  
Query: 424  tttccagatttatgtgctggactgataacatctaaacc 461
            | ||| |||| |||||||||| | ||| ||||| ||||
Sbjct: 2344 tctccggattcatgtgctggagtaataccatctgaacc 2381



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 536  ctgcagctgaaagcttgagttcagattctgttgatgcagt 575
            |||||||||||||||  |||||||  ||| ||||||||||
Sbjct: 2465 ctgcagctgaaagctcaagttcagcgtcttttgatgcagt 2504
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>dbj|AK060748.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F11, full
            insert sequence
          Length = 2479

 Score =  123 bits (62), Expect = 7e-25
 Identities = 179/218 (82%)
 Strand = Plus / Plus

                                                                        
Query: 244  gactttccagagcacgttgtgaatctggtacagcaggacttccagttgaagaggccaatt 303
            ||||| |||||| | ||||| |||  ||||||||||  ||||||||||||||||||||||
Sbjct: 809  gacttcccagaggatgttgtcaattcggtacagcagagcttccagttgaagaggccaatt 868

                                                                        
Query: 304  actaatgctgtattcaagaaccagcaagttctgttggactttatgcacatggtctgcatt 363
            |||| ||| |||||| |||||  |||  | ||||||||||| ||||| ||||| ||  | 
Sbjct: 869  actagtgcagtattccagaacaggcacatcctgttggacttcatgcagatggtttgttta 928

                                                                        
Query: 364  gattctgcggtgaccacaaacaagccaatagcatggattgatgttcatggtaaacgcttc 423
            ||||||| | || ||| || ||||||||| || ||||| |||| |||||||||| |||||
Sbjct: 929  gattctgtgatggccataagcaagccaattgcttggatcgatgatcatggtaaatgcttc 988

                                                  
Query: 424  tttccagatttatgtgctggactgataacatctaaacc 461
            | ||| |||| |||||||||| | ||| ||||| ||||
Sbjct: 989  tctccggattcatgtgctggagtaataccatctgaacc 1026
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>ref|XM_741745.1| Aspergillus fumigatus Af293 hypothetical protein (Afu7g00920)
           partial mRNA
          Length = 1272

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 278 aggacttccagttgaagaggc 298
           |||||||||||||||||||||
Sbjct: 952 aggacttccagttgaagaggc 932
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>gb|AC006035.2| Homo sapiens BAC clone RP11-196O16 from 7, complete sequence
          Length = 182372

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 419   gcttctttccagatttatgtg 439
             |||||||||||||||||||||
Sbjct: 66906 gcttctttccagatttatgtg 66926
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>gb|AC144547.6| Homo sapiens 12 BAC RP13-653N12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 59051

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 337   ttggactttatgcacatggtc 357
             |||||||||||||||||||||
Sbjct: 34622 ttggactttatgcacatggtc 34642
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>emb|CR759739.2| Human DNA sequence from clone XX-NCIH2171_18I22, complete sequence
          Length = 252905

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 165    tattctggagtggtataagaa 185
              |||||||||||||||||||||
Sbjct: 199844 tattctggagtggtataagaa 199824
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>gb|AC090577.4| Homo sapiens chromosome 8, clone RP11-575N24, complete sequence
          Length = 162391

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   tattctggagtggtataagaa 185
             |||||||||||||||||||||
Sbjct: 16002 tattctggagtggtataagaa 15982
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>gb|AC150428.3| Branchiostoma floridae clone CH302-86J11, complete sequence
          Length = 193518

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 17    atgaaaatgttctgaaagctactg 40
             ||||||||||||| ||||||||||
Sbjct: 46933 atgaaaatgttcttaaagctactg 46910
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>gb|AC153878.11| Mus musculus 6 BAC RP23-229B22 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 185647

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   gcaggacttccagttgaaga 295
             ||||||||||||||||||||
Sbjct: 24510 gcaggacttccagttgaaga 24491
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>gb|AC146001.2| Pan troglodytes BAC clone RP43-148A6 from 7, complete sequence
          Length = 154218

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 450    aacatctaaaccatctcagc 469
              ||||||||||||||||||||
Sbjct: 145768 aacatctaaaccatctcagc 145749
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>gb|AC007164.3| Homo sapiens BAC clone RP11-304A10 from 7, complete sequence
          Length = 89862

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 450 aacatctaaaccatctcagc 469
           ||||||||||||||||||||
Sbjct: 904 aacatctaaaccatctcagc 923
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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 388    ccaatagcatggattgatgttcat 411
              |||||||| |||||||||||||||
Sbjct: 146039 ccaatagcttggattgatgttcat 146016
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>emb|AL162615.13| Human DNA sequence from clone RP5-1041C10 on chromosome 20 Contains the
             5' end of the B4GALT5 gene for UDP-Gal:betaGlcNAc beta
             1,4-galactosyltransferase polypeptide 5, b, the SNRPFP1
             gene for small nuclear ribonucleoprotein polypeptide F
             pseudogene 1, a cytokine-like nuclear factor n-pac (N-PAC)
             pseudogene, the 5' end of the SLC9A8 gene for solute
             carrier family 9 (sodium/hydrogen exchanger) isoform 8 and
             two CpG islands, complete sequence
          Length = 140092

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    tgagtctgctgtgaaaagaa 76
             ||||||||||||||||||||
Sbjct: 21508 tgagtctgctgtgaaaagaa 21527
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>gb|AC158952.4| Mus musculus chromosome 8, clone RP23-265B15, complete sequence
          Length = 192398

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   ttgagttcagattctgttga 569
             ||||||||||||||||||||
Sbjct: 47948 ttgagttcagattctgttga 47929
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>gb|AY838862.1| Ninoe nigripes 28S ribosomal RNA gene, partial sequence
          Length = 4056

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   aggtctctcagcatgctgat 117
            ||||||||||||||||||||
Sbjct: 2907 aggtctctcagcatgctgat 2888
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>gb|AC116482.11| Mus musculus chromosome 8, clone RP23-423D8, complete sequence
          Length = 202027

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    atgttctgaaagctactgac 42
             ||||||||||||||||||||
Sbjct: 41536 atgttctgaaagctactgac 41555
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>gb|AC019185.8| Homo sapiens BAC clone RP11-299P7 from 2, complete sequence
          Length = 172349

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 410    atggtaaacgcttctttccagatt 433
              |||||||| |||||||||||||||
Sbjct: 108956 atggtaaatgcttctttccagatt 108979
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>gb|AC019178.7| Homo sapiens BAC clone RP11-235L22 from 2, complete sequence
          Length = 107330

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 539   cagctgaaagcttgagttcagatt 562
             ||||||| ||||||||||||||||
Sbjct: 89860 cagctgacagcttgagttcagatt 89883
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>gb|AC120001.13| Mus musculus chromosome 8, clone RP24-143B14, complete sequence
          Length = 184586

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   ttgagttcagattctgttga 569
             ||||||||||||||||||||
Sbjct: 18950 ttgagttcagattctgttga 18931
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>emb|AL135978.4|CNS01DVN Human chromosome 14 DNA sequence BAC R-125H8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173043

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     gaatggggctggatgaaaat 24
             ||||||||||||||||||||
Sbjct: 30581 gaatggggctggatgaaaat 30600
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>emb|AL121673.41|HSA305P22 Human DNA sequence from clone RP11-305P22 on chromosome 20 Contains the
             3' end of the C20orf11 gene, the C20orf59 gene, the BHLHB4
             gene for basic helix-loop-helix domain containing (class
             B) 4, the C20orf51 gene, a novel gene and seven CpG
             islands, complete sequence
          Length = 151163

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   cattgattctgcggtgacca 379
             ||||||||||||||||||||
Sbjct: 74955 cattgattctgcggtgacca 74974
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>gb|AC153922.6| Mus musculus 6 BAC RP23-81P16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 234722

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 276    gcaggacttccagttgaaga 295
              ||||||||||||||||||||
Sbjct: 111498 gcaggacttccagttgaaga 111479


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,874,052
Number of Sequences: 3902068
Number of extensions: 5874052
Number of successful extensions: 128527
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128441
Number of HSP's gapped (non-prelim): 86
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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