ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags36k07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_188118.1| Oryza sativa (japonica cultivar-group), Ozsa8550 predicted mRNA Length = 981 Score = 172 bits (87), Expect = 8e-40 Identities = 171/199 (85%) Strand = Plus / Plus Query: 130 caaccagagaagccaaaaccagcggcttcgatcgaggacatgccgctccagtccaagcag 189 ||||||||| |||||||||| ||| |||||| ||| ||||||||| | | |||||| Sbjct: 781 caaccagaggagccaaaacccacggtttcgattgagacaatgccgctcgaaactaagcag 840 Query: 190 cagatgatcctggagcagagggcacggatgaaggtggcgaagaagctgagacagcggcgc 249 |||||||| ||||||||||||| ||||||| |||| ||||||||||| ||||||||| Sbjct: 841 aagatgatcatggagcagagggcgaagatgaagctggccaagaagctgaggcagcggcgc 900 Query: 250 aggcggctcgtccaaaagaggcggctgaggaagaagggcagttggccgccgtccaagatg 309 ||| |||| ||||| |||||||||||||||||||| || || ||||| || ||||||||| Sbjct: 901 aggaggcttgtccagaagaggcggctgaggaagaaaggtagatggccaccatccaagatg 960 Query: 310 aagaagctcaagaacgtct 328 ||||||||||||||||||| Sbjct: 961 aagaagctcaagaacgtct 979
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 172 bits (87), Expect = 8e-40 Identities = 171/199 (85%) Strand = Plus / Plus Query: 130 caaccagagaagccaaaaccagcggcttcgatcgaggacatgccgctccagtccaagcag 189 ||||||||| |||||||||| ||| |||||| ||| ||||||||| | | |||||| Sbjct: 9859306 caaccagaggagccaaaacccacggtttcgattgagacaatgccgctcgaaactaagcag 9859365 Query: 190 cagatgatcctggagcagagggcacggatgaaggtggcgaagaagctgagacagcggcgc 249 |||||||| ||||||||||||| ||||||| |||| ||||||||||| ||||||||| Sbjct: 9859366 aagatgatcatggagcagagggcgaagatgaagctggccaagaagctgaggcagcggcgc 9859425 Query: 250 aggcggctcgtccaaaagaggcggctgaggaagaagggcagttggccgccgtccaagatg 309 ||| |||| ||||| |||||||||||||||||||| || || ||||| || ||||||||| Sbjct: 9859426 aggaggcttgtccagaagaggcggctgaggaagaaaggtagatggccaccatccaagatg 9859485 Query: 310 aagaagctcaagaacgtct 328 ||||||||||||||||||| Sbjct: 9859486 aagaagctcaagaacgtct 9859504
>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025D05 Length = 145684 Score = 172 bits (87), Expect = 8e-40 Identities = 171/199 (85%) Strand = Plus / Plus Query: 130 caaccagagaagccaaaaccagcggcttcgatcgaggacatgccgctccagtccaagcag 189 ||||||||| |||||||||| ||| |||||| ||| ||||||||| | | |||||| Sbjct: 123556 caaccagaggagccaaaacccacggtttcgattgagacaatgccgctcgaaactaagcag 123615 Query: 190 cagatgatcctggagcagagggcacggatgaaggtggcgaagaagctgagacagcggcgc 249 |||||||| ||||||||||||| ||||||| |||| ||||||||||| ||||||||| Sbjct: 123616 aagatgatcatggagcagagggcgaagatgaagctggccaagaagctgaggcagcggcgc 123675 Query: 250 aggcggctcgtccaaaagaggcggctgaggaagaagggcagttggccgccgtccaagatg 309 ||| |||| ||||| |||||||||||||||||||| || || ||||| || ||||||||| Sbjct: 123676 aggaggcttgtccagaagaggcggctgaggaagaaaggtagatggccaccatccaagatg 123735 Query: 310 aagaagctcaagaacgtct 328 ||||||||||||||||||| Sbjct: 123736 aagaagctcaagaacgtct 123754
>dbj|AK120429.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095M10, full insert sequence Length = 626 Score = 172 bits (87), Expect = 8e-40 Identities = 171/199 (85%) Strand = Plus / Plus Query: 130 caaccagagaagccaaaaccagcggcttcgatcgaggacatgccgctccagtccaagcag 189 ||||||||| |||||||||| ||| |||||| ||| ||||||||| | | |||||| Sbjct: 279 caaccagaggagccaaaacccacggtttcgattgagacaatgccgctcgaaactaagcag 338 Query: 190 cagatgatcctggagcagagggcacggatgaaggtggcgaagaagctgagacagcggcgc 249 |||||||| ||||||||||||| ||||||| |||| ||||||||||| ||||||||| Sbjct: 339 aagatgatcatggagcagagggcgaagatgaagctggccaagaagctgaggcagcggcgc 398 Query: 250 aggcggctcgtccaaaagaggcggctgaggaagaagggcagttggccgccgtccaagatg 309 ||| |||| ||||| |||||||||||||||||||| || || ||||| || ||||||||| Sbjct: 399 aggaggcttgtccagaagaggcggctgaggaagaaaggtagatggccaccatccaagatg 458 Query: 310 aagaagctcaagaacgtct 328 ||||||||||||||||||| Sbjct: 459 aagaagctcaagaacgtct 477
>gb|AY109510.1| Zea mays CL3822_1 mRNA sequence Length = 1028 Score = 151 bits (76), Expect = 3e-33 Identities = 169/200 (84%) Strand = Plus / Minus Query: 124 gcggagcaaccagagaagccaaaaccagcggcttcgatcgaggacatgccgctccagtcc 183 |||||||| ||||| |||| ||||||||| | ||||||||| ||||||||| |||| Sbjct: 350 gcggagcagccagaagagccgaaaccagcgaccaagatcgaggaaatgccgctcgagtcg 291 Query: 184 aagcagcagatgatcctggagcagagggcacggatgaaggtggcgaagaagctgagacag 243 |||||| |||||||| ||||||| || || ||||||||| | || ||||| ||||| ||| Sbjct: 290 aagcagaagatgatcatggagcaaagagcgcggatgaagcttgccaagaaactgaggcag 231 Query: 244 cggcgcaggcggctcgtccaaaagaggcggctgaggaagaagggcagttggccgccgtcc 303 ||||||| |||||| ||| |||||| ||| |||||||||||||| ||||| |||||| Sbjct: 230 cggcgcaagcggcttctccgcaagaggaagcttaggaagaagggcaggtggccaccgtcc 171 Query: 304 aagatgaagaagctcaagaa 323 |||||||||||||||||||| Sbjct: 170 aagatgaagaagctcaagaa 151
>emb|X14021.1|PSRPCL18 Pea mRNA for plastid ribosomal protein PsCL18 Length = 792 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 262 caaaagaggcggctgaggaagaagggcagttggccgccgtccaagatgaagaa 314 ||||||||| || ||||||||||||| | |||||| || |||||||||||||| Sbjct: 385 caaaagaggaggttgaggaagaaggggaattggccaccttccaagatgaagaa 437
>gb|AC141107.5| Medicago truncatula clone mth2-34a12, complete sequence Length = 142659 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Minus Query: 262 caaaagaggcggctgaggaagaagggcagttggccgccgtccaagatgaagaa 314 ||||||||| | ||||||||||||| | |||||| || |||||||||||||| Sbjct: 111569 caaaagaggaagttgaggaagaagggtaattggccaccttccaagatgaagaa 111517
>gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700, complete sequence Length = 410554 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 109 ggtgcaactgatgcggcggagc 130 |||||||||||||||||||||| Sbjct: 240084 ggtgcaactgatgcggcggagc 240105
>gb|AC169500.3| Mus musculus chromosome 5, clone wi1-1024F3, complete sequence Length = 45013 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 gctgaggaagaagggcagttg 293 ||||||||||||||||||||| Sbjct: 3582 gctgaggaagaagggcagttg 3562
>ref|XM_603676.2| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 7 (LOC525325), mRNA Length = 927 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 300 gtccaagatgaagaagctcaagaac 324 |||||||||||||||||| |||||| Sbjct: 45 gtccaagatgaagaagcttaagaac 69
>gb|AC009844.7| Drosophila melanogaster clone BACR01L16, complete sequence Length = 168238 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 332 cggcacatgatgtcggacagctggt 356 |||||||||||||| |||||||||| Sbjct: 78854 cggcacatgatgtccgacagctggt 78878
>gb|AC164640.4| Mus musculus BAC clone RP23-228M12 from chromosome 7, complete sequence Length = 232468 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 ggctgaggaagaagggcagtt 292 ||||||||||||||||||||| Sbjct: 124959 ggctgaggaagaagggcagtt 124979
>ref|NM_166075.1| Drosophila melanogaster CG30475-RA (CG30475), mRNA Length = 1386 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 332 cggcacatgatgtcggacagctggt 356 |||||||||||||| |||||||||| Sbjct: 458 cggcacatgatgtccgacagctggt 434
>gb|AC092156.2| Homo sapiens BAC clone RP11-326J14 from 2, complete sequence Length = 168610 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 473 tcaccataatgaaaccttttt 493 ||||||||||||||||||||| Sbjct: 129350 tcaccataatgaaaccttttt 129370
>gb|AF261940.1|AF261940 Spinacia oleracea Alwaro ribosomal protein 5 precursor (Psrp-5) mRNA, complete cds; nuclear gene for chloroplast product Length = 680 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 291 ttggccgccgtccaagatgaagaagctcaagaa 323 |||||| || || |||||||||||||||||||| Sbjct: 395 ttggccaccttctaagatgaagaagctcaagaa 427
>gb|AC005706.6|AC005706 Drosophila melanogaster, chromosome 2R, region 51D1-51D2, P1 clone DS04940, complete sequence Length = 72808 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 332 cggcacatgatgtcggacagctggt 356 |||||||||||||| |||||||||| Sbjct: 3167 cggcacatgatgtccgacagctggt 3191
>gb|AE003812.4| Drosophila melanogaster chromosome 2R, section 38 of 73 of the complete sequence Length = 255772 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 332 cggcacatgatgtcggacagctggt 356 |||||||||||||| |||||||||| Sbjct: 54697 cggcacatgatgtccgacagctggt 54721
>gb|AC102262.9| Mus musculus chromosome 15, clone RP24-216B4, complete sequence Length = 191626 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 561 tgaagcaagttttttcttttt 581 ||||||||||||||||||||| Sbjct: 74045 tgaagcaagttttttcttttt 74065
>emb|CT485619.6| Mouse DNA sequence from clone RP23-315C20 on chromosome 17, complete sequence Length = 46624 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 408 gtttgttcccattgtacaatttttc 432 ||||||||||||||| ||||||||| Sbjct: 19796 gtttgttcccattgtccaatttttc 19820
>gb|AC169519.4| Mus musculus chromosome 5, clone wi1-2285D16, complete sequence Length = 40386 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 gctgaggaagaagggcagttg 293 ||||||||||||||||||||| Sbjct: 22640 gctgaggaagaagggcagttg 22620
>emb|AL671913.10| Mouse DNA sequence from clone RP23-136P3 on chromosome 4, complete sequence Length = 220940 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 aagatgaagaagctcaagaac 324 ||||||||||||||||||||| Sbjct: 183024 aagatgaagaagctcaagaac 183044
>gb|AC160528.9| Mus musculus chromosome 15, clone RP23-310L8, complete sequence Length = 174502 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 561 tgaagcaagttttttcttttt 581 ||||||||||||||||||||| Sbjct: 162687 tgaagcaagttttttcttttt 162707
>gb|M58523.1|SPIRPL40 Spinacia oleracea ribosomal protein rpl40 mRNA, complete cds Length = 688 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 291 ttggccgccgtccaagatgaagaagctcaagaa 323 |||||| || || |||||||||||||||||||| Sbjct: 395 ttggccaccttctaagatgaagaagctcaagaa 427
>ref|NM_115550.3| Arabidopsis thaliana unknown protein AT3G56910 mRNA, complete cds Length = 665 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 275 tgaggaagaagggcagttggccgccgtccaagatgaagaa 314 ||||||||||||| | ||||| || |||||||||||||| Sbjct: 468 tgaggaagaagggtcgatggccaccttccaagatgaagaa 507
>ref|NM_115549.2| Arabidopsis thaliana unknown protein AT3G56900 mRNA, complete cds Length = 2081 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 275 tgaggaagaagggcagttggccgccgtccaagatgaagaa 314 ||||||||||||| | ||||| || |||||||||||||| Sbjct: 1794 tgaggaagaagggtcgatggccaccttccaagatgaagaa 1755
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 agagaagccaaaaccagcgg 154 |||||||||||||||||||| Sbjct: 683404 agagaagccaaaaccagcgg 683423
>ref|XM_635357.1| Dictyostelium discoideum hypothetical protein (DDB0204237), partial mRNA Length = 1146 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 ataatgcaattaaattttca 475 |||||||||||||||||||| Sbjct: 574 ataatgcaattaaattttca 555
>ref|NM_185179.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2196 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gaaggtggcgaagaagctga 238 |||||||||||||||||||| Sbjct: 1686 gaaggtggcgaagaagctga 1705
>gb|AC131065.16| Mus musculus chromosome 18, clone RP23-21J21, complete sequence Length = 208270 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttgtttgtccatagcaaca 510 |||||||||||||||||||| Sbjct: 17368 tttgtttgtccatagcaaca 17349
>gb|DQ401949.1| Myxococcus xanthus strain A59 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401948.1| Myxococcus xanthus strain A53 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401947.1| Myxococcus xanthus strain A48 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401946.1| Myxococcus xanthus strain A45 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401945.1| Myxococcus xanthus strain A25 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401944.1| Myxococcus xanthus strain A58 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401943.1| Myxococcus xanthus strain A51 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401942.1| Myxococcus xanthus strain A49 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401941.1| Myxococcus xanthus strain A47 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401940.1| Myxococcus xanthus strain A46 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401939.1| Myxococcus xanthus strain A44 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401938.1| Myxococcus xanthus strain A31 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401937.1| Myxococcus xanthus strain A24 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401936.1| Myxococcus xanthus strain A23 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401934.1| Myxococcus xanthus strain A17 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401933.1| Myxococcus xanthus strain A16 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401932.1| Myxococcus xanthus strain A15 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401931.1| Myxococcus xanthus strain A12 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|DQ401930.1| Myxococcus xanthus strain A5 phosphoglucoisomerase (pgi) gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 gatgaaggtggcgaagaagctgag 239 ||||||||||||||||||| |||| Sbjct: 285 gatgaaggtggcgaagaagttgag 262
>gb|BT014859.1| Arabidopsis thaliana At3g56910 gene, complete cds Length = 447 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 275 tgaggaagaagggcagttggccgccgtccaagatgaagaa 314 ||||||||||||| | ||||| || |||||||||||||| Sbjct: 392 tgaggaagaagggtcgatggccaccttccaagatgaagaa 431
>gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome 7, complete sequence Length = 190553 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 552 ctgtctgtctgaagcaagtt 571 |||||||||||||||||||| Sbjct: 25258 ctgtctgtctgaagcaagtt 25239
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gaaggtggcgaagaagctga 238 |||||||||||||||||||| Sbjct: 35442780 gaaggtggcgaagaagctga 35442799
>gb|AC023912.5|ATAC023912 Arabidopsis thaliana chromosome III BAC F3E22 genomic sequence, complete sequence Length = 63767 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aaccagagaagccaaaacca 150 |||||||||||||||||||| Sbjct: 63641 aaccagagaagccaaaacca 63660
>gb|AC127331.4| Mus musculus BAC clone RP23-127A19 from 18, complete sequence Length = 179177 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttgtttgtccatagcaaca 510 |||||||||||||||||||| Sbjct: 154909 tttgtttgtccatagcaaca 154890
>gb|AC129852.5| Homo sapiens X BAC RP11-540E20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170072 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 485 aacctttttgtttgtccatagcaa 508 |||||||||||||| ||||||||| Sbjct: 150399 aacctttttgtttgaccatagcaa 150376
>emb|AL031368.2|HS662N3 Human DNA sequence from clone RP4-662N3 on chromosome Xp21.1-21.3, complete sequence Length = 143890 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 485 aacctttttgtttgtccatagcaa 508 |||||||||||||| ||||||||| Sbjct: 123795 aacctttttgtttgaccatagcaa 123818
>gb|AC155933.3| Mus musculus BAC clone RP23-89K6 from chromosome 7, complete sequence Length = 265770 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 ctgtctgtctgaagcaagtt 571 |||||||||||||||||||| Sbjct: 41947 ctgtctgtctgaagcaagtt 41966
>emb|AL390921.1|ATT8M16 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16 Length = 107271 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 275 tgaggaagaagggcagttggccgccgtccaagatgaagaa 314 ||||||||||||| | ||||| || |||||||||||||| Sbjct: 85536 tgaggaagaagggtcgatggccaccttccaagatgaagaa 85497
>gb|AC112506.5| Homo sapiens 3 BAC RP11-286P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115279 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 557 tgtctgaagcaagttttttc 576 |||||||||||||||||||| Sbjct: 110450 tgtctgaagcaagttttttc 110469
>gb|AC079457.14| Homo sapiens 12 BAC RP11-632M17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 120449 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 ccattgtacaatttttctgt 435 |||||||||||||||||||| Sbjct: 32671 ccattgtacaatttttctgt 32690
>gb|AY042882.1| Arabidopsis thaliana ribosomal protein, chloroplast (T8M16_240) mRNA, complete cds Length = 639 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 275 tgaggaagaagggcagttggccgccgtccaagatgaagaa 314 ||||||||||||| | ||||| || |||||||||||||| Sbjct: 444 tgaggaagaagggtcgatggccaccttccaagatgaagaa 483
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gaaggtggcgaagaagctga 238 |||||||||||||||||||| Sbjct: 35532852 gaaggtggcgaagaagctga 35532871
>emb|BX825166.1|CNS0A6DU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL17ZG11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 606 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 275 tgaggaagaagggcagttggccgccgtccaagatgaagaa 314 ||||||||||||| | ||||| || |||||||||||||| Sbjct: 419 tgaggaagaagggtcgatggccaccttccaagatgaagaa 458
>emb|BX825764.1|CNS0A4U6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL61ZA04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 619 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 275 tgaggaagaagggcagttggccgccgtccaagatgaagaa 314 ||||||||||||| | ||||| || |||||||||||||| Sbjct: 417 tgaggaagaagggtcgatggccaccttccaagatgaagaa 456
>emb|BX842177.1|CNS09YBO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL17ZB07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 617 Score = 40.1 bits (20), Expect = 8.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 275 tgaggaagaagggcagttggccgccgtccaagatgaagaa 314 ||||||||||||| | ||||| || |||||||||||||| Sbjct: 414 tgaggaagaagggtcgatggccaccttccaagatgaagaa 453
>gb|AC083817.19|AC083817 Mus musculus 1 BAC RP23-470G12 (Roswell Park Cancer Institute Mouse BAC) complete sequence Length = 204950 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 476 ccataatgaaacctttttgtttgt 499 ||||||||||||||||| |||||| Sbjct: 89190 ccataatgaaaccttttagtttgt 89213
>gb|AC036106.6|AC036106 Arabidopsis thaliana chromosome 3 BAC T8E24 genomic sequence, complete sequence Length = 51646 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aaccagagaagccaaaacca 150 |||||||||||||||||||| Sbjct: 18225 aaccagagaagccaaaacca 18244
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete sequence Length = 133846 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 gaaggtggcgaagaagctga 238 |||||||||||||||||||| Sbjct: 44846 gaaggtggcgaagaagctga 44827
>dbj|AK111868.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044J01, full insert sequence Length = 3321 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gaaggtggcgaagaagctga 238 |||||||||||||||||||| Sbjct: 2200 gaaggtggcgaagaagctga 2219
>emb|AL929032.10| Zebrafish DNA sequence from clone DKEY-4C23 in linkage group 22, complete sequence Length = 236775 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 555 tctgtctgaagcaagttttttctttttc 582 ||||||||||| ||||||| |||||||| Sbjct: 105379 tctgtctgaagtaagttttatctttttc 105352
>gb|AC007156.2|AC007156 Homo sapiens chromosome 18, clone hRPK.419_J_16, complete sequence Length = 203591 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aaccagagaagccaaaacca 150 |||||||||||||||||||| Sbjct: 12149 aaccagagaagccaaaacca 12168
>dbj|AP003970.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-790I14, complete sequence Length = 168594 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ttttcaccataatgaaacct 489 |||||||||||||||||||| Sbjct: 147601 ttttcaccataatgaaacct 147620
>dbj|AP003127.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-710G6, complete sequences Length = 161238 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ttttcaccataatgaaacct 489 |||||||||||||||||||| Sbjct: 21204 ttttcaccataatgaaacct 21223
>emb|BX248330.6| Zebrafish DNA sequence from clone CH211-278E17 in linkage group 22, complete sequence Length = 189880 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 555 tctgtctgaagcaagttttttctttttc 582 ||||||||||| ||||||| |||||||| Sbjct: 188345 tctgtctgaagtaagttttatctttttc 188318
>dbj|AP005209.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-138E9, complete sequence Length = 161797 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 aaccagagaagccaaaacca 150 |||||||||||||||||||| Sbjct: 11922 aaccagagaagccaaaacca 11903 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,011,273 Number of Sequences: 3902068 Number of extensions: 7011273 Number of successful extensions: 116980 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116781 Number of HSP's gapped (non-prelim): 199 length of query: 592 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 569 effective length of database: 17,143,297,704 effective search space: 9754536393576 effective search space used: 9754536393576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
