ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags36j21 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ011921.1|HVU011921 Hordeum vulgare mRNA for putative amino acid selective channel protein Length = 674 Score = 593 bits (299), Expect = e-166 Identities = 404/439 (92%) Strand = Plus / Plus Query: 73 aggatgcctcgcgcggggctggcggcggggtcgagcaaggtggacatcgccatcgacctc 132 ||||||||| ||||||||||||||| ||||||| |||||||||| | |||||||||||| Sbjct: 30 aggatgcctaccgcggggctggcggccgggtcgaacaaggtggacgtggccatcgacctc 89 Query: 133 ggcaacccgctgctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcc 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90 ggcaacccgctgctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcc 149 Query: 193 tgcagggtggccgccgaggacgccttcgactgcctccaaagtgggagtgtctcgaagcgc 252 |||||||||| ||||||||||||||||||||||||||| || ||| | ||||||||||| Sbjct: 150 tgcagggtggtcgccgaggacgccttcgactgcctccacagaggggatatctcgaagcgc 209 Query: 253 aagctcgagcagacactgaagaaaatgtgcaaggagggcgcatattggggtgctgttgct 312 |||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 210 cagcttgaagagacgctgaagaaaatgtgcaaggagggtgcatattggggtgctgttgct 269 Query: 313 ggagtgtatgtaggcatggagtatggagtggaaagggtccgcggacagtatgactggaaa 372 || |||||||||||||||||||||||||||||||||||||| || | |||||||||| Sbjct: 270 ggggtgtatgtaggcatggagtatggagtggaaagggtccgtggtgaccgtgactggaaa 329 Query: 373 aacgcgttgattggaggcatcgcaagcggcgccctgatctctgccgcgagcgacaacaaa 432 || |||||||| |||||||| |||| || |||||| ||||||| |||||| |||||||| Sbjct: 330 aatgcgttgataggaggcattgcaactggtgccctggtctctgctgcgagcaacaacaaa 389 Query: 433 gggaacaagatcgcccaggacgccatcaccggaggcgccatcgcgaccgccgtcgagttc 492 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 390 gggaacaagatcgcccaggacgccatcaccggaggtgccatcgcgaccgccgtcgagttc 449 Query: 493 atcaactacctcacctagc 511 ||||||||||||||||||| Sbjct: 450 atcaactacctcacctagc 468 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 547 tatcagacaagactgaataagaacttgttgactgaagcc 585 |||| ||||||||||||||||||||| |||||||||||| Sbjct: 497 tatcggacaagactgaataagaacttcttgactgaagcc 535
>gb|AY107980.1| Zea mays PCO142484 mRNA sequence Length = 690 Score = 230 bits (116), Expect = 4e-57 Identities = 302/364 (82%) Strand = Plus / Plus Query: 148 aaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcagggtggccgcc 207 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| Sbjct: 94 aaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcaaggtggcggcc 153 Query: 208 gaggacgccttcgactgcctccaaagtgggagtgtctcgaagcgcaagctcgagcagaca 267 ||||| |||||||||||||||| || ||| ||| || ||||||||| | ||||| | Sbjct: 154 gaggagaccttcgactgcctccacaggggggatgtttcaaagcgcaaggttgagcatgcc 213 Query: 268 ctgaagaaaatgtgcaaggagggcgcatattggggtgctgttgctggagtgtatgtaggc 327 |||||||| |||||||||||||||||||||||||| |||||||||| || || || ||| Sbjct: 214 ctgaagaagatgtgcaaggagggcgcatattgggggactgttgctggcgtctacgtgggc 273 Query: 328 atggagtatggagtggaaagggtccgcggacagtatgactggaaaaacgcgttgattgga 387 ||| |||||| ||||| |||||||| || | ||||||||| |||||| || | ||| Sbjct: 274 gtggtgtatggcgtggagagggtccgtgggcgcagtgactggaagaacgcgatggtcgga 333 Query: 388 ggcatcgcaagcggcgccctgatctctgccgcgagcgacaacaaagggaacaagatcgcc 447 ||| | |||||| ||| |||| ||||| ||| |||| | || ||||||||| | Sbjct: 334 ggcgccttgtccggcgcgctggtctccgccgccagcagcaaccacggagacaagatcgtc 393 Query: 448 caggacgccatcaccggaggcgccatcgcgaccgccgtcgagttcatcaactacctcacc 507 ||||||||||||||| |||||| |||| || |||||||||||| ||||||||||||| Sbjct: 394 aaggacgccatcaccgccggcgccgtcgcaacggccgtcgagttcgccaactacctcacc 453 Query: 508 tagc 511 |||| Sbjct: 454 tagc 457
>dbj|AK101693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059M19, full insert sequence Length = 697 Score = 218 bits (110), Expect = 2e-53 Identities = 197/226 (87%) Strand = Plus / Plus Query: 119 tcgccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaagatcg 178 ||||||||||| | || ||||| | |||||||||||||||||||||||||||||||||| Sbjct: 132 tcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaagatcg 191 Query: 179 gcgccgtcggcgcctgcagggtggccgccgaggacgccttcgactgcctccaaagtggga 238 |||||||||| || |||| ||| |||||||||||| | |||||||||||||| || ||| Sbjct: 192 gcgccgtcggggcgtgcaaggtcgccgccgaggacacattcgactgcctccacagagggg 251 Query: 239 gtgtctcgaagcgcaagctcgagcagacactgaagaaaatgtgcaaggagggcgcatatt 298 ||| || |||| |||||| ||||| | ||||||||||||||||||||||| || |||| Sbjct: 252 atgtttcaaagcacaagcttgagcatatgctgaagaaaatgtgcaaggagggtgcctatt 311 Query: 299 ggggtgctgttgctggagtgtatgtaggcatggagtatggagtgga 344 ||||| |||||||||| |||||||| ||||||||||| |||||||| Sbjct: 312 ggggtactgttgctggggtgtatgtgggcatggagtacggagtgga 357 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 449 aggacgccatcaccggaggcgccatcgcgaccgccgtcgagttcatcaactacctcac 506 |||||||||||||||||||||| | || || || ||||||||||||||||||||||| Sbjct: 462 aggacgccatcaccggaggcgctgttgcaacagctgtcgagttcatcaactacctcac 519
>gb|AY104698.1| Zea mays PCO142485 mRNA sequence Length = 678 Score = 216 bits (109), Expect = 6e-53 Identities = 184/209 (88%) Strand = Plus / Plus Query: 145 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcagggtggcc 204 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 208 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcaaggtggct 267 Query: 205 gccgaggacgccttcgactgcctccaaagtgggagtgtctcgaagcgcaagctcgagcag 264 |||||||| ||||||| |||||||| || ||| ||| ||||||| |||| | ||||| Sbjct: 268 gccgaggagaccttcgagtgcctccacaggggggatgtttcgaagcacaaggttgagcat 327 Query: 265 acactgaagaaaatgtgcaaggagggcgcatattggggtgctgttgctggagtgtatgta 324 | |||| ||| |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 328 gccctgaggaagatgtgcaaggagggcgcatattggggcactgttgctggagtttatgtg 387 Query: 325 ggcatggagtatggagtggaaagggtccg 353 ||||||| ||| || |||||||||||||| Sbjct: 388 ggcatggtgtacggcgtggaaagggtccg 416 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 449 aggacgccatcaccggaggcgccatcgcgaccgccgtcgagttcatcaactacctcacct 508 ||||||||||||||| ||||| |||| || ||||||||||||||||||| | | |||| Sbjct: 512 aggacgccatcaccgccggcgcggtcgccacagccgtcgagttcatcaactgcattacct 571 Query: 509 agccg 513 ||||| Sbjct: 572 agccg 576
>dbj|AK071182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082P21, full insert sequence Length = 784 Score = 101 bits (51), Expect = 3e-18 Identities = 159/195 (81%) Strand = Plus / Plus Query: 145 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcagggtggcc 204 |||||||||||||||||||||||||||||||| ||||| || || || |||| ||| || Sbjct: 111 ctcaaccgcaccgtcgacggcttcctcaagattggcgctgttggggcttgcaaggtcgct 170 Query: 205 gccgaggacgccttcgactgcctccaaagtgggagtgtctcgaagcgcaagctcgagcag 264 ||||| || ||||||| ||||| || || ||| ||||| |||| ||| | ||| Sbjct: 171 gccgaagagaccttcgagtgccttcacagaggggacgtctcaaagcacaaagttgagagt 230 Query: 265 acactgaagaaaatgtgcaaggagggcgcatattggggtgctgttgctggagtgtatgta 324 |||| |||||||| |||||||| ||||||||||||||| || |||| || || ||||| Sbjct: 231 gcactcaagaaaatttgcaaggaaggcgcatattggggtactattgcgggtgtatatgtg 290 Query: 325 ggcatggagtatgga 339 ||||||||||||||| Sbjct: 291 ggcatggagtatgga 305
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04, complete sequence Length = 176678 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Plus Query: 119 tcgccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaagatcg 178 ||||||||||| | || ||||| | |||||||||||||||||||||||||||||||||| Sbjct: 86525 tcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaagatcg 86584 Query: 179 gcgccgt 185 ||||||| Sbjct: 86585 gcgccgt 86591 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 449 aggacgccatcaccggaggcgccatcgcgaccgccgtcgagttcatcaactacctcac 506 |||||||||||||||||||||| | || || || ||||||||||||||||||||||| Sbjct: 89005 aggacgccatcaccggaggcgctgttgcaacagctgtcgagttcatcaactacctcac 89062 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 305 ctgttgctggagtgtatgtaggcatggagtatggagtgga 344 |||||||||| |||||||| ||||||||||| |||||||| Sbjct: 88082 ctgttgctggggtgtatgtgggcatggagtacggagtgga 88121 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 268 ctgaagaaaatgtgcaaggagggcgcatattggggt 303 ||||||||||||||||||||||| || ||||||||| Sbjct: 87909 ctgaagaaaatgtgcaaggagggtgcctattggggt 87944 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 184 gtcggcgcctgcagggtggccgccgaggacgccttcgactgcctcca 230 ||||| || |||| ||| |||||||||||| | |||||||||||||| Sbjct: 86684 gtcggggcgtgcaaggtcgccgccgaggacacattcgactgcctcca 86730
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Plus Query: 119 tcgccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaagatcg 178 ||||||||||| | || ||||| | |||||||||||||||||||||||||||||||||| Sbjct: 569126 tcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaagatcg 569185 Query: 179 gcgccgt 185 ||||||| Sbjct: 569186 gcgccgt 569192 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 449 aggacgccatcaccggaggcgccatcgcgaccgccgtcgagttcatcaactacctcac 506 |||||||||||||||||||||| | || || || ||||||||||||||||||||||| Sbjct: 571606 aggacgccatcaccggaggcgctgttgcaacagctgtcgagttcatcaactacctcac 571663 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 305 ctgttgctggagtgtatgtaggcatggagtatggagtgga 344 |||||||||| |||||||| ||||||||||| |||||||| Sbjct: 570683 ctgttgctggggtgtatgtgggcatggagtacggagtgga 570722 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 268 ctgaagaaaatgtgcaaggagggcgcatattggggt 303 ||||||||||||||||||||||| || ||||||||| Sbjct: 570510 ctgaagaaaatgtgcaaggagggtgcctattggggt 570545 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 184 gtcggcgcctgcagggtggccgccgaggacgccttcgactgcctcca 230 ||||| || |||| ||| |||||||||||| | |||||||||||||| Sbjct: 569285 gtcggggcgtgcaaggtcgccgccgaggacacattcgactgcctcca 569331
>ref|NM_189486.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 255 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 145 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 182 |||||||||||||||||||||||||||||||| ||||| Sbjct: 76 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 113
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 145 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 182 |||||||||||||||||||||||||||||||| ||||| Sbjct: 43036666 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 43036703 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 271 aagaaaatgtgcaaggagggcgcatattggggt 303 |||||||| |||||||| ||||||||||||||| Sbjct: 43037346 aagaaaatttgcaaggaaggcgcatattggggt 43037378
>dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698H10 Length = 153449 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 145 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 182 |||||||||||||||||||||||||||||||| ||||| Sbjct: 137545 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 137582 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 271 aagaaaatgtgcaaggagggcgcatattggggt 303 |||||||| |||||||| ||||||||||||||| Sbjct: 138225 aagaaaatttgcaaggaaggcgcatattggggt 138257
>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0459B04 Length = 142475 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 145 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 182 |||||||||||||||||||||||||||||||| ||||| Sbjct: 33695 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 33732 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 271 aagaaaatgtgcaaggagggcgcatattggggt 303 |||||||| |||||||| ||||||||||||||| Sbjct: 34375 aagaaaatttgcaaggaaggcgcatattggggt 34407
>dbj|AB041032.1| Oryza sativa gene for metallothionein-like protein, complete cds Length = 4072 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 145 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 182 |||||||||||||||||||||||||||||||| ||||| Sbjct: 102 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 139 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 271 aagaaaatgtgcaaggagggcgcatattggggt 303 |||||||| |||||||| ||||||||||||||| Sbjct: 783 aagaaaatttgcaaggaaggcgcatattggggt 815
>gb|BT019074.1| Zea mays clone Contig647.F mRNA sequence Length = 774 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 277 atgtgcaaggagggcgcatattggggtgctgttgctggagtgtatgtaggcatggagtat 336 |||||||||| ||| ||||||||||| |||||||||| || ||||| ||||||| ||| Sbjct: 432 atgtgcaaggggggggcatattggggccctgttgctggggtttatgtgggcatggtgtag 373 Query: 337 ggagtggaaagggtccg 353 || | |||||||||||| Sbjct: 372 gggggggaaagggtccg 356
>gb|U43718.1|TAU43718 Triticum aestivum pMA1951 mRNA, partial cds Length = 777 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 125 tcgacctcggcaacccgctgctcaaccgc 153 ||||||||||| ||||||||||||||||| Sbjct: 654 tcgacctcggccacccgctgctcaaccgc 626
>emb|X94304.1|STPOM14 S.tuberosum mRNA for POM14 protein Length = 537 Score = 48.1 bits (24), Expect = 0.034 Identities = 60/72 (83%) Strand = Plus / Plus Query: 269 tgaagaaaatgtgcaaggagggcgcatattggggtgctgttgctggagtgtatgtaggca 328 ||||||||||||| || || || || |||||||| |||||||||| || |||| || | Sbjct: 206 tgaagaaaatgtgtaaagaaggtgcttattgggggactgttgctggggtatatgctggaa 265 Query: 329 tggagtatggag 340 |||||||||||| Sbjct: 266 tggagtatggag 277
>ref|NM_146102.1| Mus musculus expressed sequence AU041783 (AU041783), mRNA Length = 3581 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 252 caagctcgagcagacactgaagaaaat 278 |||||| |||||||||||||||||||| Sbjct: 2210 caagctggagcagacactgaagaaaat 2236
>gb|BT017732.1| Zea mays clone EL01N0448C02.c mRNA sequence Length = 868 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 127 gacctcggcaacccgctgctcaaccgc 153 ||||||||| ||||||||||||||||| Sbjct: 170 gacctcggccacccgctgctcaaccgc 196
>gb|BC031515.1| Mus musculus expressed sequence AU041783, mRNA (cDNA clone MGC:28084 IMAGE:3711746), complete cds Length = 3581 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 252 caagctcgagcagacactgaagaaaat 278 |||||| |||||||||||||||||||| Sbjct: 2210 caagctggagcagacactgaagaaaat 2236
>gb|AC125150.3| Mus musculus BAC clone RP24-354K9 from chromosome 19, complete sequence Length = 154390 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 252 caagctcgagcagacactgaagaaaat 278 |||||| |||||||||||||||||||| Sbjct: 66171 caagctggagcagacactgaagaaaat 66145
>gb|AC161518.3| Mus musculus chromosome 19, clone RP24-232M2, complete sequence Length = 176356 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 252 caagctcgagcagacactgaagaaaat 278 |||||| |||||||||||||||||||| Sbjct: 146409 caagctggagcagacactgaagaaaat 146435
>dbj|AK220430.1| Mus musculus mRNA for mKIAA1914 protein Length = 3532 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 252 caagctcgagcagacactgaagaaaat 278 |||||| |||||||||||||||||||| Sbjct: 2177 caagctggagcagacactgaagaaaat 2203
>dbj|AK087449.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130120P06 product:similar to CDNA FLJ14564 FIS, CLONE NT2RM4000229, WEAKLY SIMILAR TO GALLUS GALLUS ACTIN FILAMENT-ASSOCIATED PROTEIN (AFAP-110) MRNA (FRAGMENT) [Homo sapiens], full insert sequence Length = 3600 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 252 caagctcgagcagacactgaagaaaat 278 |||||| |||||||||||||||||||| Sbjct: 2245 caagctggagcagacactgaagaaaat 2271
>dbj|AK048649.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130093H02 product:similar to CDNA FLJ14564 FIS, CLONE NT2RM4000229, WEAKLY SIMILAR TO GALLUS GALLUS ACTIN FILAMENT-ASSOCIATED PROTEIN (AFAP-110) MRNA (FRAGMENT) [Homo sapiens], full insert sequence Length = 3669 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 252 caagctcgagcagacactgaagaaaat 278 |||||| |||||||||||||||||||| Sbjct: 2314 caagctggagcagacactgaagaaaat 2340
>gb|AY111174.1| Zea mays CL27726_1 mRNA sequence Length = 802 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 127 gacctcggcaacccgctgctcaaccgc 153 ||||||||| ||||||||||||||||| Sbjct: 648 gacctcggccacccgctgctcaaccgc 622
>emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 1/8 Length = 348517 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 126 cgacctcggcaacccgctgctcaacc 151 ||||| |||||||||||||||||||| Sbjct: 48097 cgaccccggcaacccgctgctcaacc 48072
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 468 cgccatcgcgaccgccgtcgag 489 |||||||||||||||||||||| Sbjct: 232790 cgccatcgcgaccgccgtcgag 232769
>ref|XM_468423.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1077 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 ctcaagatcggcgccgtcggc 189 ||||||||||||||||||||| Sbjct: 664 ctcaagatcggcgccgtcggc 684
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 125 tcgacctcggcaacccgctgctcaaccgc 153 ||||||||||| ||||||| ||||||||| Sbjct: 10820522 tcgacctcggccacccgctcctcaaccgc 10820550
>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08, from chromosome 3, complete sequence Length = 108833 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 125 tcgacctcggcaacccgctgctcaaccgc 153 ||||||||||| ||||||| ||||||||| Sbjct: 34365 tcgacctcggccacccgctcctcaaccgc 34337
>gb|AY232032.1| Drosophila yakuba clone yak-ad_CG5885 mRNA sequence Length = 540 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 ggcatcgcaagcggcgccctg 408 ||||||||||||||||||||| Sbjct: 520 ggcatcgcaagcggcgccctg 540
>gb|AY950802.1| Bacteriophage SH1, complete genome Length = 30889 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 ccgccgaggacgccttcgact 223 ||||||||||||||||||||| Sbjct: 13869 ccgccgaggacgccttcgact 13889
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 125 tcgacctcggcaacccgctgctcaaccgc 153 ||||||||||| ||||||| ||||||||| Sbjct: 10818623 tcgacctcggccacccgctcctcaaccgc 10818651
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 ctcaagatcggcgccgtcggc 189 ||||||||||||||||||||| Sbjct: 35153080 ctcaagatcggcgccgtcggc 35153100
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 ctcaagatcggcgccgtcggc 189 ||||||||||||||||||||| Sbjct: 48436 ctcaagatcggcgccgtcggc 48456
>dbj|AK063714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C03, full insert sequence Length = 839 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 125 tcgacctcggcaacccgctgctcaaccgc 153 ||||||||||| ||||||| ||||||||| Sbjct: 178 tcgacctcggccacccgctcctcaaccgc 206
>gb|AY057933.1| Bromus inermis stress-inducible membrane pore protein (BG15) mRNA, complete cds Length = 819 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 125 tcgacctcggcaacccgctgctcaaccgc 153 ||||||||||| ||||||| ||||||||| Sbjct: 141 tcgacctcggccacccgctcctcaaccgc 169
>gb|AC121542.8| Mus musculus chromosome 15, clone RP24-137J5, complete sequence Length = 164489 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 gacagtatgactggaaaaac 375 |||||||||||||||||||| Sbjct: 106646 gacagtatgactggaaaaac 106665
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 cgccatcaccggaggcgcca 472 |||||||||||||||||||| Sbjct: 5132899 cgccatcaccggaggcgcca 5132880
>gb|AC131999.9| Mus musculus chromosome 15, clone RP24-139E21, complete sequence Length = 214392 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gacagtatgactggaaaaac 375 |||||||||||||||||||| Sbjct: 187697 gacagtatgactggaaaaac 187678
>emb|AL034407.1|HS657J8 Human DNA sequence from clone RP4-657J8 on chromosome Xq26.1-26.3, complete sequence Length = 98954 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gtatggagtggaaagggtcc 352 |||||||||||||||||||| Sbjct: 2171 gtatggagtggaaagggtcc 2190
>emb|AJ719930.1| Gallus gallus mRNA for hypothetical protein, clone 8g15 Length = 2474 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 gcgcggggctggcggcgggg 102 |||||||||||||||||||| Sbjct: 81 gcgcggggctggcggcgggg 62
>ref|NM_001008467.1| Gallus gallus anaphase promoting complex subunit 10 (ANAPC10), mRNA Length = 2474 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 gcgcggggctggcggcgggg 102 |||||||||||||||||||| Sbjct: 81 gcgcggggctggcggcgggg 62
>gb|AE005829.1| Caulobacter crescentus CB15 section 155 of 359 of the complete genome Length = 11420 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 gacatcgccatcgacctcgg 134 |||||||||||||||||||| Sbjct: 3118 gacatcgccatcgacctcgg 3137
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete sequence Length = 158550 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tgtgccgactgccgagtgct 22 |||||||||||||||||||| Sbjct: 19808 tgtgccgactgccgagtgct 19827
>gb|AY249529.1| Rhodococcus ruber aldh6-adh6 operon, complete sequence Length = 2791 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 gccatcgcgaccgccgtcga 488 |||||||||||||||||||| Sbjct: 373 gccatcgcgaccgccgtcga 392
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 ggtggccgccgaggacgccttcga 221 |||||||||||||| ||||||||| Sbjct: 861806 ggtggccgccgaggtcgccttcga 861783
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tgtgccgactgccgagtgct 22 |||||||||||||||||||| Sbjct: 21044583 tgtgccgactgccgagtgct 21044564
>gb|AC093511.4| Homo sapiens chromosome 16 clone CTD-2507C6, complete sequence Length = 189250 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 252 caagctcgagcagacactgaagaaaatg 279 |||||| ||| ||||||||||||||||| Sbjct: 111159 caagctagagtagacactgaagaaaatg 111186
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 gcggggctggcggcggggtc 104 |||||||||||||||||||| Sbjct: 2174295 gcggggctggcggcggggtc 2174314
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 cggcgccgtcggcgcctgca 196 |||||||||||||||||||| Sbjct: 1296821 cggcgccgtcggcgcctgca 1296840
>ref|XM_316558.2| Anopheles gambiae str. PEST ENSANGP00000010090 (ENSANGG00000007601), partial mRNA Length = 639 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cggggctggcggcggggtcg 105 |||||||||||||||||||| Sbjct: 588 cggggctggcggcggggtcg 569
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tgtgccgactgccgagtgct 22 |||||||||||||||||||| Sbjct: 21055847 tgtgccgactgccgagtgct 21055828 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,120,703 Number of Sequences: 3902068 Number of extensions: 4120703 Number of successful extensions: 88494 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87567 Number of HSP's gapped (non-prelim): 926 length of query: 603 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 580 effective length of database: 17,143,297,704 effective search space: 9943112668320 effective search space used: 9943112668320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
