Clone Information

BLAST Search Result

Clone Name	bags36j18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC153370.13\| Mus musculus 10 BAC RP23-281M13 (Roswell Park Ca...	46	0.15
2	gb\|AC164172.10\| Mus musculus 10 BAC RP23-392K16 (Roswell Park Ca...	46	0.15
3	gb\|AC005019.1\| Homo sapiens BAC clone GS1-250A16 from 7, complet...	44	0.58
4	emb\|AL158047.9\| Human DNA sequence from clone RP11-388B24 on chr...	44	0.58
5	emb\|AL135905.6\| Human DNA sequence from clone RP5-1148A21 on chr...	44	0.58
6	gb\|DQ129390.1\| Uncultured bacterium clone AKIW1070 16S ribosomal...	44	0.58
7	gb\|AC090587.10\| Homo sapiens chromosome 11, clone RP11-348A20, c...	44	0.58
8	emb\|BX276117.5\| Zebrafish DNA sequence from clone CH211-112K18 i...	44	0.58
9	emb\|BX001047.7\| Zebrafish DNA sequence from clone CH211-288D18 i...	44	0.58
10	ref\|NM_001036233.1\| Arabidopsis thaliana unknown protein AT2G039...	42	2.3
11	gb\|AC121595.3\| Mus musculus BAC clone RP23-299A12 from chromosom...	42	2.3
12	gb\|U29536.2\| Caenorhabditis elegans cosmid F45E12, complete sequ...	42	2.3
13	emb\|AL606504.14\| Human DNA sequence from clone RP11-358K2 on chr...	42	2.3
14	gb\|AC164614.3\| Mus musculus BAC clone RP23-337L12 from chromosom...	42	2.3
15	gb\|AC104952.8\| Homo sapiens chromosome 8, clone RP11-141J23, com...	42	2.3
16	gb\|DQ023266.1\| Pan troglodytes HSD17B1P pseudogene, complete seq...	42	2.3
17	dbj\|AP007155.1\| Aspergillus oryzae RIB40 genomic DNA, SC003	42	2.3
18	gb\|AC007167.5\| Arabidopsis thaliana chromosome 2 clone F3C11 map...	42	2.3
19	dbj\|AK162045.1\| Mus musculus 12 days embryo female mullerian duc...	42	2.3
20	gb\|AC097445.1\| Drosophila melanogaster, chromosome 2R, region 43...	42	2.3
21	emb\|BX935583.2\| Gallus gallus finished cDNA, clone ChEST81c1	42	2.3
22	gb\|AC100793.8\| Homo sapiens chromosome 17, clone CTD-3193K9, com...	42	2.3
23	emb\|BX005105.6\| Zebrafish DNA sequence from clone DKEY-37M8 in l...	42	2.3
24	gb\|AE003842.4\| Drosophila melanogaster chromosome 2R, section 8 ...	42	2.3
25	gb\|AC006469.1\|AC006469 Drosophila melanogaster, chromosome 2R, r...	42	2.3
26	gb\|AC127569.4\| Mus musculus BAC clone RP24-216E20 from 9, comple...	42	2.3
27	emb\|BX005240.7\| Mouse DNA sequence from clone RP23-185M16 on chr...	42	2.3
28	gb\|AC145851.3\| Dasypus novemcinctus clone VMRC5-509I16, complete...	40	9.1
29	gb\|AC132583.3\| Mus musculus BAC clone RP24-339P17 from chromosom...	40	9.1
30	gb\|AC125273.9\| Mus musculus chromosome 1, clone RP24-156N4, comp...	40	9.1
31	gb\|AY334073.1\| Arcanobacterium pyogenes erm(B)-element 23S rRNA ...	40	9.1
32	gb\|AC102087.12\| Mus musculus chromosome 13, clone RP23-166D15, c...	40	9.1
33	gb\|AC129019.4\| Mus musculus BAC clone RP24-541L1 from chromosome...	40	9.1
34	gb\|AC122208.4\| Mus musculus BAC clone RP23-95H7 from chromosome ...	40	9.1
35	gb\|AC023600.19\| Homo sapiens 3 BAC RP11-754J20 (Roswell Park Can...	40	9.1
36	gb\|AY345595.1\| Bacteroides uniformis transposon CTnBST, complete...	40	9.1
37	gb\|AC098740.3\| Mus musculus BAC clone RP23-122H3 from 3, complet...	40	9.1
38	emb\|AL157373.23\| Human DNA sequence from clone RP11-456H18 on ch...	40	9.1
39	emb\|AL157837.10\| Human DNA sequence from clone RP11-467I21 on ch...	40	9.1
40	gb\|AC157921.5\| Mus musculus chromosome 1, clone RP23-129L19, com...	40	9.1
41	gb\|BT009538.1\| Triticum aestivum clone wr1.pk0144.b10:fis, full ...	40	9.1
42	gb\|AC023296.6\| Homo sapiens chromosome 8, clone RP11-564K14, com...	40	9.1
43	gb\|AC023742.4\| Drosophila melanogaster X BAC RP98-43C24 (Roswell...	40	9.1
44	gb\|AC108481.2\| Drosophila melanogaster 3L BAC RP98-1O19 (Roswell...	40	9.1
45	dbj\|AP007167.1\| Aspergillus oryzae RIB40 genomic DNA, SC020	40	9.1
46	ref\|XM_695008.1\| PREDICTED: Danio rerio similar to dynein, axone...	40	9.1
47	gb\|AC090736.5\| Homo sapiens chromosome 8, clone RP11-1126C1, com...	40	9.1
48	gb\|AC163352.2\| Mus musculus BAC clone RP23-98P11 from chromosome...	40	9.1
49	gb\|AC020603.4\|AC020603 Homo sapiens BAC clone RP11-534K13 from 8...	40	9.1
50	gb\|AC135324.4\| Homo sapiens chromosome 8, clone RP11-42L22, comp...	40	9.1
51	gb\|AC026765.22\| Homo sapiens 12 BAC RP4-601P9 (Roswell Park Canc...	40	9.1
52	emb\|BX005278.8\| Zebrafish DNA sequence from clone CH211-194P15, ...	40	9.1
53	emb\|CT573071.1\| Kuenenia stuttgartiensis genome fragment KUST_E ...	40	9.1
54	gb\|AE003430.4\| Drosophila melanogaster chromosome X, section 14 ...	40	9.1
55	emb\|CT025597.13\| Mouse DNA sequence from clone RP23-265N2 on chr...	40	9.1
56	gb\|AC132121.3\| Mus musculus BAC clone RP24-62L21 from 13, comple...	40	9.1
57	gb\|AC141482.4\| Mus musculus BAC clone RP23-159C3 from 16, comple...	40	9.1
58	gb\|AC147561.3\| Mus musculus BAC clone RP23-314D3 from 13, comple...	40	9.1
59	emb\|AJ968665.1\| Clostridium difficile erm(B) gene for rRNA methy...	40	9.1
60	gb\|AC006698.1\| Caenorhabditis elegans cosmid W10C4, complete seq...	40	9.1
61	emb\|AL807815.3\| Mouse DNA sequence from clone RP23-207H16 on chr...	40	9.1
62	dbj\|AB081476.1\| Apis cerana mariner-like element Acmar1 DNA, com...	40	9.1

>gb|AC153370.13| Mus musculus 10 BAC RP23-281M13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 213550

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 192    tatgtatgagtttttatgaattt 214
              |||||||||||||||||||||||
Sbjct: 143714 tatgtatgagtttttatgaattt 143736

to top

>gb|AC164172.10| Mus musculus 10 BAC RP23-392K16 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 184194

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 192   tatgtatgagtttttatgaattt 214
             |||||||||||||||||||||||
Sbjct: 63720 tatgtatgagtttttatgaattt 63742

to top

>gb|AC005019.1| Homo sapiens BAC clone GS1-250A16 from 7, complete sequence
          Length = 188362

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 119   agaaaaaagttatgtggtgatt 140
             ||||||||||||||||||||||
Sbjct: 44800 agaaaaaagttatgtggtgatt 44821

to top

>emb|AL158047.9| Human DNA sequence from clone RP11-388B24 on chromosome 9 Contains a
             novel pseudogene, a novel gene, a DEAD/H
             (Asp-Glu-Ala-Asp/His) box polypeptide 10 (RNA helicase)
             (HRH-J8) (DDX10) pseudogene and a ribosomal protein S2
             (LLREP3) (RPS2) pseudogene, complete sequence
          Length = 201629

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 172   ctcaaatttctgattttatcta 193
             ||||||||||||||||||||||
Sbjct: 49914 ctcaaatttctgattttatcta 49893

to top

>emb|AL135905.6| Human DNA sequence from clone RP5-1148A21 on chromosome 6 Contains a
             ribosomal protein L7A (RPL7A) pseudogene, the PTP4A1 gene
             for protein tyrosine phosphatase type IVA member 1 and a
             CpG island, complete sequence
          Length = 118439

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 164   ttttgtcgctcaaatttctgatttta 189
             |||||| |||||||||||||||||||
Sbjct: 12217 ttttgtggctcaaatttctgatttta 12242

to top

>gb|DQ129390.1| Uncultured bacterium clone AKIW1070 16S ribosomal RNA gene, partial
           sequence
          Length = 1367

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 587 actaattaaagaacaaactccg 608
           ||||||||||||||||||||||
Sbjct: 926 actaattaaagaacaaactccg 905

to top

>gb|AC090587.10| Homo sapiens chromosome 11, clone RP11-348A20, complete sequence
          Length = 165459

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 510    atttaatttaattcagtttaaa 531
              ||||||||||||||||||||||
Sbjct: 107483 atttaatttaattcagtttaaa 107504



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 510    atttaatttaattcagtttaa 530
              |||||||||||||||||||||
Sbjct: 107516 atttaatttaattcagtttaa 107536

to top

>emb|BX276117.5| Zebrafish DNA sequence from clone CH211-112K18 in linkage group 17,
             complete sequence
          Length = 181677

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 527   ttaaagaacaatgtttagtgtc 548
             ||||||||||||||||||||||
Sbjct: 60125 ttaaagaacaatgtttagtgtc 60146

to top

>emb|BX001047.7| Zebrafish DNA sequence from clone CH211-288D18 in linkage group 7,
             complete sequence
          Length = 87084

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 521   ttcagtttaaagaacaatgtttagtg 546
             ||||||||||| ||||||||||||||
Sbjct: 28723 ttcagtttaaacaacaatgtttagtg 28698

to top

>ref|NM_001036233.1| Arabidopsis thaliana unknown protein AT2G03933 mRNA, complete cds
          Length = 228

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 122 aaaaagttatgtggtgatttt 142
           |||||||||||||||||||||
Sbjct: 12  aaaaagttatgtggtgatttt 32

to top

>gb|AC121595.3| Mus musculus BAC clone RP23-299A12 from chromosome X, complete sequence
          Length = 214297

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 181    ctgattttatctatgtatgag 201
              |||||||||||||||||||||
Sbjct: 136589 ctgattttatctatgtatgag 136609

to top

>gb|U29536.2| Caenorhabditis elegans cosmid F45E12, complete sequence
          Length = 14741

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 164  ttttgtcgctcaaatttctgatttt 188
            |||| ||||||||||||||||||||
Sbjct: 9238 ttttttcgctcaaatttctgatttt 9214

to top

>emb|AL606504.14| Human DNA sequence from clone RP11-358K2 on chromosome 10, complete
             sequence
          Length = 81147

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 309   aactgacatgttatgatatttttgt 333
             ||||||| |||||||||||||||||
Sbjct: 35198 aactgacttgttatgatatttttgt 35174

to top

>gb|AC164614.3| Mus musculus BAC clone RP23-337L12 from chromosome 9, complete sequence
          Length = 215002

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 584   attactaattaaagaacaaac 604
             |||||||||||||||||||||
Sbjct: 49052 attactaattaaagaacaaac 49072

to top

>gb|AC104952.8| Homo sapiens chromosome 8, clone RP11-141J23, complete sequence
          Length = 190902

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 316   atgttatgatatttttgtgca 336
             |||||||||||||||||||||
Sbjct: 56721 atgttatgatatttttgtgca 56701

to top

>gb|DQ023266.1| Pan troglodytes HSD17B1P pseudogene, complete sequence; and
              17beta-hydroxysteroid dehydrogenase type 1 (HSD17B1) gene,
              complete cds
          Length = 200028

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 133    tggtgattttgagatattttt 153
              |||||||||||||||||||||
Sbjct: 186165 tggtgattttgagatattttt 186145

to top

>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 108     gctggttggcaagaaaaaagttatg 132
               |||||||||||||||||| ||||||
Sbjct: 3627903 gctggttggcaagaaaaacgttatg 3627927

to top

>gb|AC007167.5| Arabidopsis thaliana chromosome 2 clone F3C11 map mi310, complete
             sequence
          Length = 103874

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 122   aaaaagttatgtggtgatttt 142
             |||||||||||||||||||||
Sbjct: 26599 aaaaagttatgtggtgatttt 26619

to top

>dbj|AK162045.1| Mus musculus 12 days embryo female mullerian duct includes
           surrounding region cDNA, RIKEN full-length enriched
           library, clone:6820429L09 product:unclassifiable, full
           insert sequence
          Length = 2404

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 584 attactaattaaagaacaaac 604
           |||||||||||||||||||||
Sbjct: 190 attactaattaaagaacaaac 170

to top

>gb|AC097445.1| Drosophila melanogaster, chromosome 2R, region 43A-43B, BAC clone
              BACR12F04, complete sequence
          Length = 197994

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 124    aaagttatgtggtgattttga 144
              |||||||||||||||||||||
Sbjct: 143198 aaagttatgtggtgattttga 143218

to top

>emb|BX935583.2| Gallus gallus finished cDNA, clone ChEST81c1
          Length = 1386

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 137 gattttgagatatttttctcc 157
           |||||||||||||||||||||
Sbjct: 116 gattttgagatatttttctcc 96

to top

>gb|AC100793.8| Homo sapiens chromosome 17, clone CTD-3193K9, complete sequence
          Length = 134465

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 133   tggtgattttgagatattttt 153
             |||||||||||||||||||||
Sbjct: 31542 tggtgattttgagatattttt 31522

to top

>emb|BX005105.6| Zebrafish DNA sequence from clone DKEY-37M8 in linkage group 22,
           complete sequence
          Length = 171403

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 511 tttaatttaattcagtttaaa 531
           |||||||||||||||||||||
Sbjct: 258 tttaatttaattcagtttaaa 278

to top

>gb|AE003842.4| Drosophila melanogaster chromosome 2R, section 8 of 73 of the complete
             sequence
          Length = 231065

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 124   aaagttatgtggtgattttga 144
             |||||||||||||||||||||
Sbjct: 86878 aaagttatgtggtgattttga 86858

to top

>gb|AC006469.1|AC006469 Drosophila melanogaster, chromosome 2R, region 43A1-43A2, P1 clones
             DS02730 and DS07472, complete sequence
          Length = 89938

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 124   aaagttatgtggtgattttga 144
             |||||||||||||||||||||
Sbjct: 32788 aaagttatgtggtgattttga 32768

to top

>gb|AC127569.4| Mus musculus BAC clone RP24-216E20 from 9, complete sequence
          Length = 168588

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 584    attactaattaaagaacaaac 604
              |||||||||||||||||||||
Sbjct: 150394 attactaattaaagaacaaac 150374

to top

>emb|BX005240.7| Mouse DNA sequence from clone RP23-185M16 on chromosome X, complete
              sequence
          Length = 197310

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 181    ctgattttatctatgtatgag 201
              |||||||||||||||||||||
Sbjct: 192086 ctgattttatctatgtatgag 192066

to top

>gb|AC145851.3| Dasypus novemcinctus clone VMRC5-509I16, complete sequence
          Length = 123145

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 510   atttaatttaattcagttta 529
             ||||||||||||||||||||
Sbjct: 53876 atttaatttaattcagttta 53895

to top

>gb|AC132583.3| Mus musculus BAC clone RP24-339P17 from chromosome 3, complete sequence
          Length = 153573

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    catgttatgatatttttgtg 334
              ||||||||||||||||||||
Sbjct: 101613 catgttatgatatttttgtg 101594

to top

>gb|AC125273.9| Mus musculus chromosome 1, clone RP24-156N4, complete sequence
          Length = 187198

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    tgattgctcttctcaactga 314
              ||||||||||||||||||||
Sbjct: 117643 tgattgctcttctcaactga 117662

to top

>gb|AY334073.1| Arcanobacterium pyogenes erm(B)-element 23S rRNA methylase (ermB)
            gene, complete cds, and unknown genes; and unknown gene
          Length = 4380

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  tgattttatctatgtatgag 201
            ||||||||||||||||||||
Sbjct: 2783 tgattttatctatgtatgag 2802

to top

>gb|AC102087.12| Mus musculus chromosome 13, clone RP23-166D15, complete sequence
          Length = 221034

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 562    tttttcctgtgctttgtaca 581
              ||||||||||||||||||||
Sbjct: 198222 tttttcctgtgctttgtaca 198203

to top

>gb|AC129019.4| Mus musculus BAC clone RP24-541L1 from chromosome 13, complete sequence
          Length = 190792

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 562   tttttcctgtgctttgtaca 581
             ||||||||||||||||||||
Sbjct: 33083 tttttcctgtgctttgtaca 33064

to top

>gb|AC122208.4| Mus musculus BAC clone RP23-95H7 from chromosome 13, complete sequence
          Length = 155854

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     tttgatgaatttaatcttct 64
              ||||||||||||||||||||
Sbjct: 107486 tttgatgaatttaatcttct 107505

to top

>gb|AC023600.19| Homo sapiens 3 BAC RP11-754J20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 185326

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 586   tactaattaaagaacaaact 605
             ||||||||||||||||||||
Sbjct: 26050 tactaattaaagaacaaact 26069

to top

>gb|AY345595.1| Bacteroides uniformis transposon CTnBST, complete sequence
          Length = 12907

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   tgattttatctatgtatgag 201
             ||||||||||||||||||||
Sbjct: 12352 tgattttatctatgtatgag 12371

to top

>gb|AC098740.3| Mus musculus BAC clone RP23-122H3 from 3, complete sequence
          Length = 219346

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   catgttatgatatttttgtg 334
             ||||||||||||||||||||
Sbjct: 51289 catgttatgatatttttgtg 51308

to top

>emb|AL157373.23| Human DNA sequence from clone RP11-456H18 on chromosome 6 Contains two
             novel genes, the 5' end of the HIVEP1 gene for human
             immunodeficiency virus type I enhancer binding protein 1
             and three CpG islands, complete sequence
          Length = 93847

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   gctggttggcaagaaaaaag 127
             ||||||||||||||||||||
Sbjct: 23650 gctggttggcaagaaaaaag 23631

to top

>emb|AL157837.10| Human DNA sequence from clone RP11-467I21 on chromosome 1q31.1-31.3
              Contains a ribosomal protein L23a (RPL23A) pseudogene,
              complete sequence
          Length = 139485

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 515    atttaattcagtttaaagaa 534
              ||||||||||||||||||||
Sbjct: 102832 atttaattcagtttaaagaa 102851

to top

>gb|AC157921.5| Mus musculus chromosome 1, clone RP23-129L19, complete sequence
          Length = 220521

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 295   tgattgctcttctcaactga 314
             ||||||||||||||||||||
Sbjct: 50152 tgattgctcttctcaactga 50133

to top

>gb|BT009538.1| Triticum aestivum clone wr1.pk0144.b10:fis, full insert mRNA sequence
          Length = 2748

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 645  cagatgtatatagatgcatt 664
            ||||||||||||||||||||
Sbjct: 2384 cagatgtatatagatgcatt 2403

to top

>gb|AC023296.6| Homo sapiens chromosome 8, clone RP11-564K14, complete sequence
          Length = 189532

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    tatctatgtatgagttttta 207
              ||||||||||||||||||||
Sbjct: 187396 tatctatgtatgagttttta 187377

to top

>gb|AC023742.4| Drosophila melanogaster X BAC RP98-43C24 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 172203

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 548   caaacttctattattttttc 567
             ||||||||||||||||||||
Sbjct: 28918 caaacttctattattttttc 28937

to top

>gb|AC108481.2| Drosophila melanogaster 3L BAC RP98-1O19 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 160986

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 548    caaacttctattattttttc 567
              ||||||||||||||||||||
Sbjct: 144822 caaacttctattattttttc 144841

to top

>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020
          Length = 1824958

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 118     aagaaaaaagttatgtggtg 137
               ||||||||||||||||||||
Sbjct: 1523602 aagaaaaaagttatgtggtg 1523583

to top

>ref|XM_695008.1| PREDICTED: Danio rerio similar to dynein, axonemal, heavy polypeptide
            5 (LOC571423), mRNA
          Length = 4252

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 242  cagaattacatggtagttctccaacgct 269
            ||||| |||||||||||||| |||||||
Sbjct: 1936 cagaaatacatggtagttctgcaacgct 1963

to top

>gb|AC090736.5| Homo sapiens chromosome 8, clone RP11-1126C1, complete sequence
          Length = 145832

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 421    gtgtgtactatttttattca 440
              ||||||||||||||||||||
Sbjct: 118529 gtgtgtactatttttattca 118510

to top

>gb|AC163352.2| Mus musculus BAC clone RP23-98P11 from chromosome 16, complete sequence
          Length = 190996

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 505    attgcatttaatttaattca 524
              ||||||||||||||||||||
Sbjct: 120933 attgcatttaatttaattca 120914

to top

>gb|AC020603.4|AC020603 Homo sapiens BAC clone RP11-534K13 from 8, complete sequence
          Length = 202317

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   gtgtgtactatttttattca 440
             ||||||||||||||||||||
Sbjct: 20185 gtgtgtactatttttattca 20166

to top

>gb|AC135324.4| Homo sapiens chromosome 8, clone RP11-42L22, complete sequence
          Length = 77514

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tatctatgtatgagttttta 207
             ||||||||||||||||||||
Sbjct: 55493 tatctatgtatgagttttta 55474

to top

>gb|AC026765.22| Homo sapiens 12 BAC RP4-601P9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 129225

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 553   ttctattattttttcctgtgcttt 576
             ||||||||||||||| ||||||||
Sbjct: 73894 ttctattattttttcttgtgcttt 73917

to top

>emb|BX005278.8| Zebrafish DNA sequence from clone CH211-194P15, complete sequence
          Length = 146323

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   gagttttgatgaatttaatc 60
            ||||||||||||||||||||
Sbjct: 9706 gagttttgatgaatttaatc 9687

to top

>emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E (5 of 5)
          Length = 2199546

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 447    aaaaggtttagctataaact 466
              ||||||||||||||||||||
Sbjct: 153792 aaaaggtttagctataaact 153811

to top

>gb|AE003430.4| Drosophila melanogaster chromosome X, section 14 of 74 of the complete
              sequence
          Length = 296227

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 548    caaacttctattattttttc 567
              ||||||||||||||||||||
Sbjct: 282153 caaacttctattattttttc 282172

to top

>emb|CT025597.13| Mouse DNA sequence from clone RP23-265N2 on chromosome 13, complete
              sequence
          Length = 230327

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     tttgatgaatttaatcttct 64
              ||||||||||||||||||||
Sbjct: 181948 tttgatgaatttaatcttct 181967

to top

>gb|AC132121.3| Mus musculus BAC clone RP24-62L21 from 13, complete sequence
          Length = 204277

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 135    gtgattttgagatatttttctcct 158
              ||||||||| ||||||||||||||
Sbjct: 131975 gtgattttgtgatatttttctcct 131998

to top

>gb|AC141482.4| Mus musculus BAC clone RP23-159C3 from 16, complete sequence
          Length = 180832

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 505   attgcatttaatttaattca 524
             ||||||||||||||||||||
Sbjct: 34383 attgcatttaatttaattca 34364

to top

>gb|AC147561.3| Mus musculus BAC clone RP23-314D3 from 13, complete sequence
          Length = 183494

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     tttgatgaatttaatcttct 64
              ||||||||||||||||||||
Sbjct: 112241 tttgatgaatttaatcttct 112222

to top

>emb|AJ968665.1| Clostridium difficile erm(B) gene for rRNA methyltransferase and ORF3
          Length = 1384

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  tgattttatctatgtatgag 201
            ||||||||||||||||||||
Sbjct: 1144 tgattttatctatgtatgag 1163

to top

>gb|AC006698.1| Caenorhabditis elegans cosmid W10C4, complete sequence
          Length = 25647

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 458   ctataaactacaatttgttc 477
             ||||||||||||||||||||
Sbjct: 10796 ctataaactacaatttgttc 10815

to top

>emb|AL807815.3| Mouse DNA sequence from clone RP23-207H16 on chromosome 4, complete
             sequence
          Length = 206914

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 175   aaatttctgattttatctatgtat 198
             ||||| ||||||||||||||||||
Sbjct: 48078 aaattactgattttatctatgtat 48101

to top

>dbj|AB081476.1| Apis cerana mariner-like element Acmar1 DNA, complete sequence
          Length = 1378

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 ggcaagaaaaaagttatgtg 134
           ||||||||||||||||||||
Sbjct: 242 ggcaagaaaaaagttatgtg 261


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,452,129
Number of Sequences: 3902068
Number of extensions: 8452129
Number of successful extensions: 183407
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 183201
Number of HSP's gapped (non-prelim): 206
length of query: 664
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 641
effective length of database: 17,143,297,704
effective search space: 10988853828264
effective search space used: 10988853828264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result