ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags36j11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY341861.1| Hordeum vulgare subsp. vulgare CTD-phosphatase-li... 1041 0.0
2gb|AY341862.1| Hordeum vulgare subsp. vulgare CTD-phosphatase-li... 321 1e-84
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
4dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
5dbj|AK066990.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
6ref|NM_191905.1| Oryza sativa (japonica cultivar-group), predic... 66 1e-07
7dbj|AK071909.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
8gb|AY812956.1| Schistosoma japonicum SJCHGC02338 protein mRNA, c... 46 0.12
9gb|AC154327.2| Mus musculus BAC clone RP23-289N10 from 14, compl... 46 0.12
10ref|XM_736632.1| Plasmodium chabaudi chabaudi Pc-fam-4 protein (... 42 1.8
11emb|AL359642.12| Human DNA sequence from clone RP11-507F17 on ch... 42 1.8
12gb|AC009413.2| Homo sapiens BAC clone RP11-459K11 from 2, comple... 42 1.8
13gb|AC154032.1| Drosophila melanogaster clone BACR16N23, complete... 40 7.3
14ref|NM_101889.1| Arabidopsis thaliana prolyl oligopeptidase/ ser... 40 7.3
15gb|AC117203.4| Mus musculus BAC clone RP23-251N4 from chromosome... 40 7.3
16ref|XM_639452.1| Dictyostelium discoideum hypothetical protein (... 40 7.3
17gb|AC010916.9| Drosophila melanogaster clone BACR11A04, complete... 40 7.3
18gb|AC010838.12| Drosophila melanogaster clone BACR13D24, complet... 40 7.3
19gb|AC139758.3| Mus musculus BAC clone RP23-367E7 from chromosome... 40 7.3
20gb|AC124745.4| Mus musculus BAC clone RP23-236O12 from 14, compl... 40 7.3
21gb|AC010099.10| Homo sapiens BAC clone RP11-420H19 from 7, compl... 40 7.3
22ref|XM_674511.1| Plasmodium berghei strain ANKA hypothetical pro... 40 7.3
23gb|AE008701.1| Salmonella typhimurium LT2, section 9 of 220 of t... 40 7.3
24emb|AL627265.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 7.3
25gb|AC015914.8| Homo sapiens chromosome 15, clone RP11-111E14, co... 40 7.3
26gb|AC010071.6| Drosophila melanogaster 3L BAC RP98-18G16 (Roswel... 40 7.3
27gb|AC110053.3| Homo sapiens chromosome 8, clone CTD-3145H4, comp... 40 7.3
28gb|AC107904.6| Homo sapiens chromosome 8, clone RP11-644K4, comp... 40 7.3
29gb|AC104580.5| Homo sapiens chromosome 8, clone RP11-1084G15, co... 40 7.3
30gb|AC008133.7| Homo sapiens chromosome 17, clone RP11-40A13, com... 40 7.3
31gb|AC104988.4| Homo sapiens chromosome 18, clone RP11-732E23, co... 40 7.3
32gb|AC073607.19| Homo sapiens 12 BAC RP11-462G20 (Roswell Park Ca... 40 7.3
33gb|AC093546.2| Drosophila melanogaster 3L BAC RP98-8G7 (Roswell ... 40 7.3
34gb|AC021541.7| Homo sapiens chromosome 15, clone RP11-505L16, co... 40 7.3
35gb|AC025898.10| Homo sapiens chromosome 17, clone RP11-421O15, c... 40 7.3
36gb|AC160829.3| Xenopus tropicalis MLC2 gene, complete cds, compl... 40 7.3
37gb|AC158611.7| Mus musculus 10 BAC RP23-29D19 (Roswell Park Canc... 40 7.3
38gb|AC026955.10|AC026955 Homo sapiens chromosome 17, clone RP11-5... 40 7.3
39dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
40gb|AC152505.2| Pan troglodytes BAC clone RP43-113N22 from chromo... 40 7.3
41gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470... 40 7.3
42gb|AC026234.4|F14O10 Sequence of BAC F14O10 from Arabidopsis tha... 40 7.3
43gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 7.3
44dbj|AP004375.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
45gb|AC154341.2| Mus musculus BAC clone RP23-240C2 from 16, comple... 40 7.3
46gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 7.3
47emb|AL356596.3|CNS05TDF Human chromosome 14 DNA sequence BAC R-3... 40 7.3
48gb|AE003539.3| Drosophila melanogaster chromosome 3L, section 46... 40 7.3
49gb|AE003532.3| Drosophila melanogaster chromosome 3L, section 53... 40 7.3
50gb|AE003846.5| Drosophila melanogaster chromosome 4, section 5 o... 40 7.3
51gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 7.3
52dbj|AP000640.5| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 7.3
53emb|AL831722.8| Mouse DNA sequence from clone RP23-312D15 on chr... 40 7.3
54emb|AL627236.11| Mouse DNA sequence from clone RP23-384G12 on ch... 40 7.3
55dbj|AP001819.2| Homo sapiens genomic DNA, chromosome 4q22-q24, c... 40 7.3 
>gb|AY341861.1| Hordeum vulgare subsp. vulgare CTD-phosphatase-like protein (Cpl1)
           mRNA, complete cds; alternatively spliced
          Length = 1906

 Score = 1041 bits (525), Expect = 0.0
 Identities = 532/535 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaactgctgatnagnatgccagcactgagaatgaagaggaagtttgatgatgacattttc 61
           ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gaactgctgatcaagatgccagcactgagaatgaagaggaagtttgatgatgacattttc 339

                                                                       
Query: 62  gggagtgagtttgacatcaaatccatgaaatcggtgaaaatctcgccttcccaagttgat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gggagtgagtttgacatcaaatccatgaaatcggtgaaaatctcgccttcccaagttgat 399

                                                                       
Query: 122 gagttcgagcaggcatttgtgttaaactcgtcttacaaggaccctcaggatgagcctgag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gagttcgagcaggcatttgtgttaaactcgtcttacaaggaccctcaggatgagcctgag 459

                                                                       
Query: 182 ccgataactcaactagctgtccaggatattagggttacagaattttccggtttgcatgct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ccgataactcaactagctgtccaggatattagggttacagaattttccggtttgcatgct 519

                                                                       
Query: 242 gtacttggaggaacatccgttgctctgctgaaggatttaatatctgaaactgtggttcca 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gtacttggaggaacatccgttgctctgctgaaggatttaatatctgaaactgtggttcca 579

                                                                       
Query: 302 ccaaatttggaacctgattctttatctaataatgatgatggcaaatctcagtcaaatgta 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ccaaatttggaacctgattctttatctaataatgatgatggcaaatctcagtcaaatgta 639

                                                                       
Query: 362 gtgaacaccggtgataaagagtttgcagatgaagatgtaaattctgcagcacaagatatc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gtgaacaccggtgataaagagtttgcagatgaagatgtaaattctgcagcacaagatatc 699

                                                                       
Query: 422 tgtactgtcaatgatcatgagaaaagcctgggctcaaacccggattgcagcctgttggat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tgtactgtcaatgatcatgagaaaagcctgggctcaaacccggattgcagcctgttggat 759

                                                                  
Query: 482 atttataatcctgatgatgcttttcctttcttatttgatgttccaactggtctcc 536
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 atttataatcctgatgatgcttttcctttcttatttgatgttccaactggtctcc 814
to top
>gb|AY341862.1| Hordeum vulgare subsp. vulgare CTD-phosphatase-like protein (Cpl1)
            gene, complete cds; alternatively spliced
          Length = 5591

 Score =  321 bits (162), Expect = 1e-84
 Identities = 169/172 (98%)
 Strand = Plus / Plus

                                                                        
Query: 2    gaactgctgatnagnatgccagcactgagaatgaagaggaagtttgatgatgacattttc 61
            ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2031 gaactgctgatcaagatgccagcactgagaatgaagaggaagtttgatgatgacattttc 2090

                                                                        
Query: 62   gggagtgagtttgacatcaaatccatgaaatcggtgaaaatctcgccttcccaagttgat 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2091 gggagtgagtttgacatcaaatccatgaaatcggtgaaaatctcgccttcccaagttgat 2150

                                                                
Query: 122  gagttcgagcaggcatttgtgttaaactcgtcttacaaggaccctcaggatg 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2151 gagttcgagcaggcatttgtgttaaactcgtcttacaaggaccctcaggatg 2202



 Score =  313 bits (158), Expect = 3e-82
 Identities = 158/158 (100%)
 Strand = Plus / Plus

                                                                        
Query: 379  agagtttgcagatgaagatgtaaattctgcagcacaagatatctgtactgtcaatgatca 438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4094 agagtttgcagatgaagatgtaaattctgcagcacaagatatctgtactgtcaatgatca 4153

                                                                        
Query: 439  tgagaaaagcctgggctcaaacccggattgcagcctgttggatatttataatcctgatga 498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4154 tgagaaaagcctgggctcaaacccggattgcagcctgttggatatttataatcctgatga 4213

                                                  
Query: 499  tgcttttcctttcttatttgatgttccaactggtctcc 536
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 4214 tgcttttcctttcttatttgatgttccaactggtctcc 4251



 Score =  214 bits (108), Expect = 2e-52
 Identities = 108/108 (100%)
 Strand = Plus / Plus

                                                                        
Query: 273  aggatttaatatctgaaactgtggttccaccaaatttggaacctgattctttatctaata 332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3779 aggatttaatatctgaaactgtggttccaccaaatttggaacctgattctttatctaata 3838

                                                            
Query: 333  atgatgatggcaaatctcagtcaaatgtagtgaacaccggtgataaag 380
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3839 atgatgatggcaaatctcagtcaaatgtagtgaacaccggtgataaag 3886



 Score =  200 bits (101), Expect = 3e-48
 Identities = 102/103 (99%)
 Strand = Plus / Plus

                                                                        
Query: 173  gagcctgagccgataactcaactagctgtccaggatattagggttacagaattttccggt 232
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2866 gagcctgagccgataactcaactagcygtccaggatattagggttacagaattttccggt 2925

                                                       
Query: 233  ttgcatgctgtacttggaggaacatccgttgctctgctgaagg 275
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2926 ttgcatgctgtacttggaggaacatccgttgctctgctgaagg 2968
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 101/122 (82%)
 Strand = Plus / Minus

                                                                            
Query: 383      tttgcagatgaagatgtaaattctgcagcacaagatatctgtactgtcaatgatcatgag 442
                |||||||||||||||| |||||||||| || |  ||| |||||| || |||  |||||| 
Sbjct: 27173433 tttgcagatgaagatgcaaattctgcatcatataatagctgtaccgttaattgtcatgaa 27173374

                                                                            
Query: 443      aaaagcctgggctcaaacccggattgcagcctgttggatatttataatcctgatgatgct 502
                 |||||  |||||| ||   || |||||| |||||||| |||||||||||||||||||||
Sbjct: 27173373 gaaagctggggctcgaatgagggttgcagtctgttggacatttataatcctgatgatgct 27173314

                  
Query: 503      tt 504
                ||
Sbjct: 27173313 tt 27173312



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 17       atgccagcactgagaatgaagaggaagtttgatgatga 54
                |||||||||||||| ||||||||||| ||||| |||||
Sbjct: 27175958 atgccagcactgaggatgaagaggaactttgacgatga 27175921
to top
>dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0003E08
          Length = 135014

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 101/122 (82%)
 Strand = Plus / Minus

                                                                         
Query: 383   tttgcagatgaagatgtaaattctgcagcacaagatatctgtactgtcaatgatcatgag 442
             |||||||||||||||| |||||||||| || |  ||| |||||| || |||  |||||| 
Sbjct: 81111 tttgcagatgaagatgcaaattctgcatcatataatagctgtaccgttaattgtcatgaa 81052

                                                                         
Query: 443   aaaagcctgggctcaaacccggattgcagcctgttggatatttataatcctgatgatgct 502
              |||||  |||||| ||   || |||||| |||||||| |||||||||||||||||||||
Sbjct: 81051 gaaagctggggctcgaatgagggttgcagtctgttggacatttataatcctgatgatgct 80992

               
Query: 503   tt 504
             ||
Sbjct: 80991 tt 80990



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 17    atgccagcactgagaatgaagaggaagtttgatgatga 54
             |||||||||||||| ||||||||||| ||||| |||||
Sbjct: 83636 atgccagcactgaggatgaagaggaactttgacgatga 83599
to top
>dbj|AK066990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093I20, full
            insert sequence
          Length = 3361

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 101/122 (82%)
 Strand = Plus / Plus

                                                                        
Query: 383  tttgcagatgaagatgtaaattctgcagcacaagatatctgtactgtcaatgatcatgag 442
            |||||||||||||||| |||||||||| || |  ||| |||||| || |||  |||||| 
Sbjct: 1986 tttgcagatgaagatgcaaattctgcatcatataatagctgtaccgttaattgtcatgaa 2045

                                                                        
Query: 443  aaaagcctgggctcaaacccggattgcagcctgttggatatttataatcctgatgatgct 502
             |||||  |||||| ||   || |||||| |||||||| |||||||||||||||||||||
Sbjct: 2046 gaaagctggggctcgaatgagggttgcagtctgttggacatttataatcctgatgatgct 2105

              
Query: 503  tt 504
            ||
Sbjct: 2106 tt 2107



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 17  atgccagcactgagaatgaagaggaagtttgatgatga 54
           |||||||||||||| ||||||||||| ||||| |||||
Sbjct: 331 atgccagcactgaggatgaagaggaactttgacgatga 368
to top
>ref|NM_191905.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1632

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 96/117 (82%)
 Strand = Plus / Plus

                                                                       
Query: 388 agatgaagatgtaaattctgcagcacaagatatctgtactgtcaatgatcatgagaaaag 447
           ||||||||||| |||||||||| || |  ||| |||||| || |||  ||||||  ||||
Sbjct: 669 agatgaagatgcaaattctgcatcatataatagctgtaccgttaattgtcatgaagaaag 728

                                                                    
Query: 448 cctgggctcaaacccggattgcagcctgttggatatttataatcctgatgatgcttt 504
           |  |||||| ||   || |||||| |||||||| |||||||||||||||||||||||
Sbjct: 729 ctggggctcgaatgagggttgcagtctgttggacatttataatcctgatgatgcttt 785



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 17  atgccagcactgagaatgaagaggaagtttgatgatga 54
           |||||||||||||| ||||||||||| ||||| |||||
Sbjct: 313 atgccagcactgaggatgaagaggaactttgacgatga 350
to top
>dbj|AK071909.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065H16, full
           insert sequence
          Length = 1852

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 96/117 (82%)
 Strand = Plus / Plus

                                                                       
Query: 388 agatgaagatgtaaattctgcagcacaagatatctgtactgtcaatgatcatgagaaaag 447
           ||||||||||| |||||||||| || |  ||| |||||| || |||  ||||||  ||||
Sbjct: 669 agatgaagatgcaaattctgcatcatataatagctgtaccgttaattgtcatgaagaaag 728

                                                                    
Query: 448 cctgggctcaaacccggattgcagcctgttggatatttataatcctgatgatgcttt 504
           |  |||||| ||   || |||||| |||||||| |||||||||||||||||||||||
Sbjct: 729 ctggggctcgaatgagggttgcagtctgttggacatttataatcctgatgatgcttt 785



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 17  atgccagcactgagaatgaagaggaagtttgatgatga 54
           |||||||||||||| ||||||||||| ||||| |||||
Sbjct: 313 atgccagcactgaggatgaagaggaactttgacgatga 350
to top
>gb|AY812956.1| Schistosoma japonicum SJCHGC02338 protein mRNA, complete cds
          Length = 1666

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 480  atatttataatcctgatgatgct 502
            |||||||||||||||||||||||
Sbjct: 1220 atatttataatcctgatgatgct 1242
to top
>gb|AC154327.2| Mus musculus BAC clone RP23-289N10 from 14, complete sequence
          Length = 161835

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 438   atgagaaaagcctgggctcaaac 460
             |||||||||||||||||||||||
Sbjct: 55714 atgagaaaagcctgggctcaaac 55692
to top
>ref|XM_736632.1| Plasmodium chabaudi chabaudi Pc-fam-4 protein (PC108533.00.0)
           partial mRNA
          Length = 1086

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 214 ggttacagaattttccggttt 234
           |||||||||||||||||||||
Sbjct: 756 ggttacagaattttccggttt 736
to top
>emb|AL359642.12| Human DNA sequence from clone RP11-507F17 on chromosome 9 Contains a
              kertain pseudogene, complete sequence
          Length = 122613

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 277    tttaatatctgaaactgtggt 297
              |||||||||||||||||||||
Sbjct: 111517 tttaatatctgaaactgtggt 111497
to top
>gb|AC009413.2| Homo sapiens BAC clone RP11-459K11 from 2, complete sequence
          Length = 174412

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    gcactgagaatgaagaggaag 43
             |||||||||||||||||||||
Sbjct: 11444 gcactgagaatgaagaggaag 11464
to top
>gb|AC154032.1| Drosophila melanogaster clone BACR16N23, complete sequence
          Length = 149839

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 383    tttgcagatgaagatgtaaattct 406
              |||||||||||||||| |||||||
Sbjct: 126444 tttgcagatgaagatgaaaattct 126421
to top
>ref|NM_101889.1| Arabidopsis thaliana prolyl oligopeptidase/ serine-type
           endopeptidase/ serine-type peptidase AT1G20380 mRNA,
           complete cds
          Length = 2327

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 tggaacctgattctttatct 328
           ||||||||||||||||||||
Sbjct: 509 tggaacctgattctttatct 528
to top
>gb|AC117203.4| Mus musculus BAC clone RP23-251N4 from chromosome 10, complete sequence
          Length = 231532

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 466    ttgcagcctgttggatattt 485
              ||||||||||||||||||||
Sbjct: 184618 ttgcagcctgttggatattt 184599
to top
>ref|XM_639452.1| Dictyostelium discoideum hypothetical protein (DDB0217341), partial
           mRNA
          Length = 915

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 322 tttatctaataatgatgatg 341
           ||||||||||||||||||||
Sbjct: 33  tttatctaataatgatgatg 14
to top
>gb|AC010916.9| Drosophila melanogaster clone BACR11A04, complete sequence
          Length = 165458

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 383  tttgcagatgaagatgtaaattct 406
            |||||||||||||||| |||||||
Sbjct: 2288 tttgcagatgaagatgaaaattct 2311
to top
>gb|AC010838.12| Drosophila melanogaster clone BACR13D24, complete sequence
          Length = 156843

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 383   tttgcagatgaagatgtaaattct 406
             |||||||||||||||| |||||||
Sbjct: 10786 tttgcagatgaagatgaaaattct 10763
to top
>gb|AC139758.3| Mus musculus BAC clone RP23-367E7 from chromosome 14, complete
            sequence
          Length = 210969

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 501  cttttcctttcttatttgat 520
            ||||||||||||||||||||
Sbjct: 5084 cttttcctttcttatttgat 5103
to top
>gb|AC124745.4| Mus musculus BAC clone RP23-236O12 from 14, complete sequence
          Length = 143589

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 501   cttttcctttcttatttgat 520
             ||||||||||||||||||||
Sbjct: 16765 cttttcctttcttatttgat 16746
to top
>gb|AC010099.10| Homo sapiens BAC clone RP11-420H19 from 7, complete sequence
          Length = 154836

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 502   ttttcctttcttatttgatg 521
             ||||||||||||||||||||
Sbjct: 75574 ttttcctttcttatttgatg 75555
to top
>ref|XM_674511.1| Plasmodium berghei strain ANKA hypothetical protein (PB105865.00.0)
           partial mRNA
          Length = 1054

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 319 ttctttatctaataatgatg 338
           ||||||||||||||||||||
Sbjct: 729 ttctttatctaataatgatg 710
to top
>gb|AE008701.1| Salmonella typhimurium LT2, section 9 of 220 of the complete genome
          Length = 22692

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 361  agtgaacaccggtgataaag 380
            ||||||||||||||||||||
Sbjct: 6127 agtgaacaccggtgataaag 6146
to top
>emb|AL627265.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 1/20
          Length = 251050

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    agtgaacaccggtgataaag 380
              ||||||||||||||||||||
Sbjct: 182547 agtgaacaccggtgataaag 182566
to top
>gb|AC015914.8| Homo sapiens chromosome 15, clone RP11-111E14, complete sequence
          Length = 170078

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   aagatgtaaattctgcagca 412
             ||||||||||||||||||||
Sbjct: 47418 aagatgtaaattctgcagca 47399
to top
>gb|AC010071.6| Drosophila melanogaster 3L BAC RP98-18G16 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 172540

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 498   atgcttttcctttcttattt 517
             ||||||||||||||||||||
Sbjct: 26297 atgcttttcctttcttattt 26316
to top
>gb|AC110053.3| Homo sapiens chromosome 8, clone CTD-3145H4, complete sequence
          Length = 142225

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 495    atgatgcttttcctttcttatttg 518
              ||||||||||||||| ||||||||
Sbjct: 106829 atgatgcttttccttgcttatttg 106806
to top
>gb|AC107904.6| Homo sapiens chromosome 8, clone RP11-644K4, complete sequence
          Length = 171676

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 495   atgatgcttttcctttcttatttg 518
             ||||||||||||||| ||||||||
Sbjct: 92572 atgatgcttttccttgcttatttg 92595
to top
>gb|AC104580.5| Homo sapiens chromosome 8, clone RP11-1084G15, complete sequence
          Length = 179270

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 496   tgatgcttttcctttcttat 515
             ||||||||||||||||||||
Sbjct: 81537 tgatgcttttcctttcttat 81556
to top
>gb|AC008133.7| Homo sapiens chromosome 17, clone RP11-40A13, complete sequence
          Length = 179744

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    tcttacaaggaccctcagga 171
              ||||||||||||||||||||
Sbjct: 144872 tcttacaaggaccctcagga 144853
to top
>gb|AC104988.4| Homo sapiens chromosome 18, clone RP11-732E23, complete sequence
          Length = 171501

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   tgcagcctgttggatattta 486
             ||||||||||||||||||||
Sbjct: 54586 tgcagcctgttggatattta 54567
to top
>gb|AC073607.19| Homo sapiens 12 BAC RP11-462G20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 165085

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    cagcactgagaatgaagagg 40
             ||||||||||||||||||||
Sbjct: 49262 cagcactgagaatgaagagg 49243
to top
>gb|AC093546.2| Drosophila melanogaster 3L BAC RP98-8G7 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 207761

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 499    tgcttttcctttcttatttg 518
              ||||||||||||||||||||
Sbjct: 158104 tgcttttcctttcttatttg 158085
to top
>gb|AC021541.7| Homo sapiens chromosome 15, clone RP11-505L16, complete sequence
          Length = 194023

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 393  aagatgtaaattctgcagca 412
            ||||||||||||||||||||
Sbjct: 7479 aagatgtaaattctgcagca 7498
to top
>gb|AC025898.10| Homo sapiens chromosome 17, clone RP11-421O15, complete sequence
          Length = 184875

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   tcttacaaggaccctcagga 171
             ||||||||||||||||||||
Sbjct: 46032 tcttacaaggaccctcagga 46013
to top
>gb|AC160829.3| Xenopus tropicalis MLC2 gene, complete cds, complete sequence
          Length = 62506

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 382   gtttgcagatgaagatgtaa 401
             ||||||||||||||||||||
Sbjct: 34894 gtttgcagatgaagatgtaa 34913
to top
>gb|AC158611.7| Mus musculus 10 BAC RP23-29D19 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214923

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 466    ttgcagcctgttggatattt 485
              ||||||||||||||||||||
Sbjct: 164174 ttgcagcctgttggatattt 164193
to top
>gb|AC026955.10|AC026955 Homo sapiens chromosome 17, clone RP11-585D22, complete sequence
          Length = 176258

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   tctgtactgtcaatgatcat 439
             ||||||||||||||||||||
Sbjct: 66066 tctgtactgtcaatgatcat 66085
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 322      tttatctaataatgatgatg 341
                ||||||||||||||||||||
Sbjct: 15997839 tttatctaataatgatgatg 15997858
to top
>gb|AC152505.2| Pan troglodytes BAC clone RP43-113N22 from chromosome 7, complete
             sequence
          Length = 219580

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 502   ttttcctttcttatttgatg 521
             ||||||||||||||||||||
Sbjct: 56310 ttttcctttcttatttgatg 56291
to top
>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4,
              complete sequence
          Length = 541399

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 322    tttatctaataatgatgatg 341
              ||||||||||||||||||||
Sbjct: 281843 tttatctaataatgatgatg 281862
to top
>gb|AC026234.4|F14O10 Sequence of BAC F14O10 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 53889

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 309  tggaacctgattctttatct 328
            ||||||||||||||||||||
Sbjct: 3012 tggaacctgattctttatct 2993
to top
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    agtgaacaccggtgataaag 380
              ||||||||||||||||||||
Sbjct: 182630 agtgaacaccggtgataaag 182649
to top
>dbj|AP004375.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0475C12
          Length = 140863

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   tttatctaataatgatgatg 341
             ||||||||||||||||||||
Sbjct: 69878 tttatctaataatgatgatg 69897
to top
>gb|AC154341.2| Mus musculus BAC clone RP23-240C2 from 16, complete sequence
          Length = 163871

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   atgatgcttttcctttctta 514
             ||||||||||||||||||||
Sbjct: 89451 atgatgcttttcctttctta 89432
to top
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    agtgaacaccggtgataaag 380
              ||||||||||||||||||||
Sbjct: 182538 agtgaacaccggtgataaag 182557
to top
>emb|AL356596.3|CNS05TDF Human chromosome 14 DNA sequence BAC R-354G16 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 179318

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    tttgcagatgaagatgtaaa 402
              ||||||||||||||||||||
Sbjct: 105406 tttgcagatgaagatgtaaa 105387
to top
>gb|AE003539.3| Drosophila melanogaster chromosome 3L, section 46 of 83 of the complete
              sequence
          Length = 272016

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 499    tgcttttcctttcttatttg 518
              ||||||||||||||||||||
Sbjct: 186038 tgcttttcctttcttatttg 186019
to top
>gb|AE003532.3| Drosophila melanogaster chromosome 3L, section 53 of 83 of the complete
              sequence
          Length = 295875

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 498    atgcttttcctttcttattt 517
              ||||||||||||||||||||
Sbjct: 290801 atgcttttcctttcttattt 290782
to top
>gb|AE003846.5| Drosophila melanogaster chromosome 4, section 5 of 5 of the complete
             sequence
          Length = 356494

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 383   tttgcagatgaagatgtaaattct 406
             |||||||||||||||| |||||||
Sbjct: 36251 tttgcagatgaagatgaaaattct 36228
to top
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
              complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    agtgaacaccggtgataaag 380
              ||||||||||||||||||||
Sbjct: 175149 agtgaacaccggtgataaag 175168
to top
>dbj|AP000640.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-26D16, complete
             sequence
          Length = 156734

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   ataatgatgatggcaaatct 349
             ||||||||||||||||||||
Sbjct: 32723 ataatgatgatggcaaatct 32742
to top
>emb|AL831722.8| Mouse DNA sequence from clone RP23-312D15 on chromosome X, complete
             sequence
          Length = 148564

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 432   atgatcatgagaaaagcctgggct 455
             |||| |||||||||||||||||||
Sbjct: 26333 atgaccatgagaaaagcctgggct 26356
to top
>emb|AL627236.11| Mouse DNA sequence from clone RP23-384G12 on chromosome 4, complete
              sequence
          Length = 201752

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     cactgagaatgaagaggaag 43
              ||||||||||||||||||||
Sbjct: 198627 cactgagaatgaagaggaag 198646
to top
>dbj|AP001819.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2023H4, complete
              sequence
          Length = 161775

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 498    atgcttttcctttcttattt 517
              ||||||||||||||||||||
Sbjct: 133107 atgcttttcctttcttattt 133088


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,893,658
Number of Sequences: 3902068
Number of extensions: 5893658
Number of successful extensions: 132182
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131962
Number of HSP's gapped (non-prelim): 220
length of query: 536
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 513
effective length of database: 17,143,297,704
effective search space: 8794511722152
effective search space used: 8794511722152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top