ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags36i10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_471755.1| Oryza sativa (japonica cultivar-group), predic... 151 3e-33
2ref|XM_471309.1| Oryza sativa (japonica cultivar-group), predic... 151 3e-33
3dbj|AK066975.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 3e-33
4gb|AY106540.1| Zea mays PCO142281 mRNA sequence 147 5e-32
5emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4,... 127 5e-26
6emb|AL663002.3|OSJN00199 Oryza sativa genomic DNA, chromosome 4,... 127 5e-26
7emb|AL662942.4|OSJN00135 Oryza sativa genomic DNA, chromosome 4,... 127 5e-26
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 127 5e-26
9dbj|AB200918.1| Solanum tuberosum hsr203J mRNA for hsr203J, comp... 46 0.14
10gb|AC134402.9| Mus musculus chromosome 5, clone RP24-301D19, com... 42 2.2
11gb|AC159996.7| Mus musculus chromosome 5, clone RP23-46J11, comp... 42 2.2
12emb|BX293558.19| Mouse DNA sequence from clone RP23-182P17 on ch... 42 2.2
13ref|XM_420287.1| PREDICTED: Gallus gallus similar to Ras-related... 40 8.7
14ref|XM_451085.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A01925g ... 40 8.7
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.7
16gb|AC098886.4| Mus musculus BAC clone RP23-122M21 from 4, comple... 40 8.7
17emb|AL355275.8| Human DNA sequence from clone RP11-416N18 on chr... 40 8.7
18emb|AJ630128.1| Bacteriophage S-PM2 complete genome 40 8.7
19emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 8.7
20gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 40 8.7
21gb|AF478426.1| Drosophila griseolineata cytochrome oxidase subun... 40 8.7
22gb|AC024589.5| Homo sapiens chromosome 5 clone RP11-42L13, compl... 40 8.7
23emb|BX842701.16| Zebrafish DNA sequence from clone CH211-223L2, ... 40 8.7
24dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
25gb|AC126261.3| Mus musculus BAC clone RP23-340H19 from 6, comple... 40 8.7
26gb|AC005509.1|AC005509 Homo sapiens chromosome 4 clone B200N5 ma... 40 8.7
27emb|AL606907.9| Mouse DNA sequence from clone RP23-230F2 on chro... 40 8.7
28dbj|AB022689.1| Lycopersicon esculentum DNA, similar to hsr203J,... 40 8.7 
>ref|XM_471755.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 831

 Score =  151 bits (76), Expect = 3e-33
 Identities = 121/136 (88%)
 Strand = Plus / Plus

                                                                       
Query: 194 aagagtatatggaaattgcagatagatggtttgagggcctcgtctgccaagacattccag 253
           ||||| |||| |||||||||||||||||||||||||||||| | | | |||||||| |||
Sbjct: 572 aagagcatattgaaattgcagatagatggtttgagggcctcctttccaaagacatttcag 631

                                                                       
Query: 254 ttaccaatgaagtttatgcgattcataatgttgaatttgatcgtcaggaactacggaaac 313
           |||| |||||| |||||||||| ||||||||||| ||||||||||||||||| ||||| |
Sbjct: 632 ttactaatgaaatttatgcgatacataatgttgagtttgatcgtcaggaactgcggaagc 691

                           
Query: 314 ttgtgaggatagtcca 329
           | ||||||| ||||||
Sbjct: 692 tcgtgaggacagtcca 707
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>ref|XM_471309.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 831

 Score =  151 bits (76), Expect = 3e-33
 Identities = 121/136 (88%)
 Strand = Plus / Plus

                                                                       
Query: 194 aagagtatatggaaattgcagatagatggtttgagggcctcgtctgccaagacattccag 253
           ||||| |||| |||||||||||||||||||||||||||||| | | | |||||||| |||
Sbjct: 572 aagagcatattgaaattgcagatagatggtttgagggcctcctttccaaagacatttcag 631

                                                                       
Query: 254 ttaccaatgaagtttatgcgattcataatgttgaatttgatcgtcaggaactacggaaac 313
           |||| |||||| |||||||||| ||||||||||| ||||||||||||||||| ||||| |
Sbjct: 632 ttactaatgaaatttatgcgatacataatgttgagtttgatcgtcaggaactgcggaagc 691

                           
Query: 314 ttgtgaggatagtcca 329
           | ||||||| ||||||
Sbjct: 692 tcgtgaggacagtcca 707
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>dbj|AK066975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090L20, full
           insert sequence
          Length = 1053

 Score =  151 bits (76), Expect = 3e-33
 Identities = 121/136 (88%)
 Strand = Plus / Plus

                                                                       
Query: 194 aagagtatatggaaattgcagatagatggtttgagggcctcgtctgccaagacattccag 253
           ||||| |||| |||||||||||||||||||||||||||||| | | | |||||||| |||
Sbjct: 596 aagagcatattgaaattgcagatagatggtttgagggcctcctttccaaagacatttcag 655

                                                                       
Query: 254 ttaccaatgaagtttatgcgattcataatgttgaatttgatcgtcaggaactacggaaac 313
           |||| |||||| |||||||||| ||||||||||| ||||||||||||||||| ||||| |
Sbjct: 656 ttactaatgaaatttatgcgatacataatgttgagtttgatcgtcaggaactgcggaagc 715

                           
Query: 314 ttgtgaggatagtcca 329
           | ||||||| ||||||
Sbjct: 716 tcgtgaggacagtcca 731
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>gb|AY106540.1| Zea mays PCO142281 mRNA sequence
          Length = 1236

 Score =  147 bits (74), Expect = 5e-32
 Identities = 208/252 (82%), Gaps = 3/252 (1%)
 Strand = Plus / Plus

                                                                       
Query: 184 gaggaaaatcaagagtatatggaaattgcagatagatggtttgagggcctcgtctgccaa 243
           ||||| ||||||||||||||| |||||||||||||||||||||| |||||| ||||| ||
Sbjct: 637 gaggagaatcaagagtatatgaaaattgcagatagatggtttgacggcctcctctgcaaa 696

                                                                       
Query: 244 gacattccagttaccaatgaagtttatgcgattcataatgttgaatttgatcgtcaggaa 303
           |||||| ||||||| |||||||||||  |  | |||| ||||||||||||||||||||| 
Sbjct: 697 gacatttcagttactaatgaagtttactctgtccatagtgttgaatttgatcgtcaggag 756

                                                                       
Query: 304 ctacggaaacttgtgaggatagtccaagaggtccaaaaaagcatgggaaataaagatagc 363
           || ||||| ||||||| || || |||   | ||||| ||||||    ||||||||||   
Sbjct: 757 ctgcggaagcttgtgaagagagcccacatgttccaagaaagcacacaaaataaagat--- 813

                                                                       
Query: 364 ggagaaggatctgataaaaagctttccagggcgaagaaaccacttatcatgttccttcgc 423
           || |||| |||| ||   ||||||||  | || |||||||||||||| | ||||||||| 
Sbjct: 814 ggggaagaatctaatgcgaagctttctggagcaaagaaaccacttatgaggttccttcgt 873

                       
Query: 424 tcccttgcaaag 435
           ||||||||||||
Sbjct: 874 tcccttgcaaag 885
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>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22,
              complete sequence
          Length = 174430

 Score =  127 bits (64), Expect = 5e-26
 Identities = 97/108 (89%)
 Strand = Plus / Minus

                                                                          
Query: 194    aagagtatatggaaattgcagatagatggtttgagggcctcgtctgccaagacattccag 253
              ||||| |||| |||||||||||||||||||||||||||||| | | | |||||||| |||
Sbjct: 156609 aagagcatattgaaattgcagatagatggtttgagggcctcctttccaaagacatttcag 156550

                                                              
Query: 254    ttaccaatgaagtttatgcgattcataatgttgaatttgatcgtcagg 301
              |||| |||||| |||||||||| ||||||||||| |||||||||||||
Sbjct: 156549 ttactaatgaaatttatgcgatacataatgttgagtttgatcgtcagg 156502
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>emb|AL663002.3|OSJN00199 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026I12,
             complete sequence
          Length = 128574

 Score =  127 bits (64), Expect = 5e-26
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                         
Query: 194   aagagtatatggaaattgcagatagatggtttgagggcctcgtctgccaagacattccag 253
             ||||| |||| |||||||||||||||||||||||||||||| | | | |||||||| |||
Sbjct: 86430 aagagcatattgaaattgcagatagatggtttgagggcctcctttccaaagacatttcag 86489

                                                             
Query: 254   ttaccaatgaagtttatgcgattcataatgttgaatttgatcgtcagg 301
             |||| |||||| |||||||||| ||||||||||| |||||||||||||
Sbjct: 86490 ttactaatgaaatttatgcgatacataatgttgagtttgatcgtcagg 86537
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>emb|AL662942.4|OSJN00135 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033H08,
              complete sequence
          Length = 141899

 Score =  127 bits (64), Expect = 5e-26
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                          
Query: 194    aagagtatatggaaattgcagatagatggtttgagggcctcgtctgccaagacattccag 253
              ||||| |||| |||||||||||||||||||||||||||||| | | | |||||||| |||
Sbjct: 130164 aagagcatattgaaattgcagatagatggtttgagggcctcctttccaaagacatttcag 130223

                                                              
Query: 254    ttaccaatgaagtttatgcgattcataatgttgaatttgatcgtcagg 301
              |||| |||||| |||||||||| ||||||||||| |||||||||||||
Sbjct: 130224 ttactaatgaaatttatgcgatacataatgttgagtttgatcgtcagg 130271
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  127 bits (64), Expect = 5e-26
 Identities = 97/108 (89%)
 Strand = Plus / Minus

                                                                            
Query: 194      aagagtatatggaaattgcagatagatggtttgagggcctcgtctgccaagacattccag 253
                ||||| |||| |||||||||||||||||||||||||||||| | | | |||||||| |||
Sbjct: 14042729 aagagcatattgaaattgcagatagatggtttgagggcctcctttccaaagacatttcag 14042670

                                                                
Query: 254      ttaccaatgaagtttatgcgattcataatgttgaatttgatcgtcagg 301
                |||| |||||| |||||||||| ||||||||||| |||||||||||||
Sbjct: 14042669 ttactaatgaaatttatgcgatacataatgttgagtttgatcgtcagg 14042622



 Score =  127 bits (64), Expect = 5e-26
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                           
Query: 194     aagagtatatggaaattgcagatagatggtttgagggcctcgtctgccaagacattccag 253
               ||||| |||| |||||||||||||||||||||||||||||| | | | |||||||| |||
Sbjct: 9754224 aagagcatattgaaattgcagatagatggtttgagggcctcctttccaaagacatttcag 9754283

                                                               
Query: 254     ttaccaatgaagtttatgcgattcataatgttgaatttgatcgtcagg 301
               |||| |||||| |||||||||| ||||||||||| |||||||||||||
Sbjct: 9754284 ttactaatgaaatttatgcgatacataatgttgagtttgatcgtcagg 9754331
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>dbj|AB200918.1| Solanum tuberosum hsr203J mRNA for hsr203J, complete cds
          Length = 1008

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 360 tagcggagaaggatctgataaaa 382
           |||||||||||||||||||||||
Sbjct: 803 tagcggagaaggatctgataaaa 825
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>gb|AC134402.9| Mus musculus chromosome 5, clone RP24-301D19, complete sequence
          Length = 199834

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 425   cccttgcaaagaagacacttg 445
             |||||||||||||||||||||
Sbjct: 27852 cccttgcaaagaagacacttg 27832
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>gb|AC159996.7| Mus musculus chromosome 5, clone RP23-46J11, complete sequence
          Length = 208036

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 425    cccttgcaaagaagacacttg 445
              |||||||||||||||||||||
Sbjct: 167062 cccttgcaaagaagacacttg 167042
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>emb|BX293558.19| Mouse DNA sequence from clone RP23-182P17 on chromosome 2, complete
              sequence
          Length = 157273

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 184    gaggaaaatcaagagtatatg 204
              |||||||||||||||||||||
Sbjct: 112115 gaggaaaatcaagagtatatg 112135
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>ref|XM_420287.1| PREDICTED: Gallus gallus similar to Ras-related GTP-binding protein
            ragA (LOC422311), mRNA
          Length = 2190

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 46   gaattgatggaagatcttat 65
            ||||||||||||||||||||
Sbjct: 2159 gaattgatggaagatcttat 2140
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>ref|XM_451085.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A01925g predicted mRNA
          Length = 2361

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  gatacaagccttattgagtgatgc 119
           ||||||||||||||||||| ||||
Sbjct: 205 gatacaagccttattgagttatgc 228
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 471      aaaaggagggaggcaaatag 490
                ||||||||||||||||||||
Sbjct: 10314924 aaaaggagggaggcaaatag 10314943
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>gb|AC098886.4| Mus musculus BAC clone RP23-122M21 from 4, complete sequence
          Length = 219825

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    ggtccaaaaaagcatgggaa 352
              ||||||||||||||||||||
Sbjct: 190764 ggtccaaaaaagcatgggaa 190783
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>emb|AL355275.8| Human DNA sequence from clone RP11-416N18 on chromosome 10 Contains
             part of a novel gene, complete sequence
          Length = 94410

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 57    agatcttatccattctttgaagaa 80
             ||||||||||| ||||||||||||
Sbjct: 90781 agatcttatcctttctttgaagaa 90758
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>emb|AJ630128.1| Bacteriophage S-PM2 complete genome
          Length = 196280

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    gaagatcttatccattcttt 74
             ||||||||||||||||||||
Sbjct: 84190 gaagatcttatccattcttt 84171
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>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1062590

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 96     gatacaagccttattgagtgatgc 119
              ||||||||||||||||||| ||||
Sbjct: 175773 gatacaagccttattgagttatgc 175750
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>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone
             OSJNBb0036D03, from chromosome 3, complete sequence
          Length = 125800

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 471   aaaaggagggaggcaaatag 490
             ||||||||||||||||||||
Sbjct: 28390 aaaaggagggaggcaaatag 28409
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>gb|AF478426.1| Drosophila griseolineata cytochrome oxidase subunit 2 (COII) gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 688

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 275 ttcataatgttgaatttgat 294
           ||||||||||||||||||||
Sbjct: 338 ttcataatgttgaatttgat 357
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>gb|AC024589.5| Homo sapiens chromosome 5 clone RP11-42L13, complete sequence
          Length = 170272

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 513    agtgctaaagacattattaa 532
              ||||||||||||||||||||
Sbjct: 129972 agtgctaaagacattattaa 129991
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>emb|BX842701.16| Zebrafish DNA sequence from clone CH211-223L2, complete sequence
          Length = 172765

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 302    aactacggaaacttgtgaggatag 325
              |||||||||||||| |||||||||
Sbjct: 113861 aactacggaaacttttgaggatag 113884
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 471      aaaaggagggaggcaaatag 490
                ||||||||||||||||||||
Sbjct: 10313025 aaaaggagggaggcaaatag 10313044
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>gb|AC126261.3| Mus musculus BAC clone RP23-340H19 from 6, complete sequence
          Length = 214133

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 497    caatttgtactgtcaaagtg 516
              ||||||||||||||||||||
Sbjct: 194755 caatttgtactgtcaaagtg 194736
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>gb|AC005509.1|AC005509 Homo sapiens chromosome 4 clone B200N5 map 4q25, complete sequence
          Length = 143391

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   aaaaaagcatgggaaataaa 357
             ||||||||||||||||||||
Sbjct: 41350 aaaaaagcatgggaaataaa 41369
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>emb|AL606907.9| Mouse DNA sequence from clone RP23-230F2 on chromosome 4, complete
              sequence
          Length = 208265

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    ggtccaaaaaagcatgggaa 352
              ||||||||||||||||||||
Sbjct: 179203 ggtccaaaaaagcatgggaa 179222
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>dbj|AB022689.1| Lycopersicon esculentum DNA, similar to hsr203J, complete cds
          Length = 1008

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 360 tagcggagaaggatctgata 379
           ||||||||||||||||||||
Sbjct: 803 tagcggagaaggatctgata 822


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,211,905
Number of Sequences: 3902068
Number of extensions: 6211905
Number of successful extensions: 126994
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126799
Number of HSP's gapped (non-prelim): 194
length of query: 638
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 615
effective length of database: 17,143,297,704
effective search space: 10543128087960
effective search space used: 10543128087960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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