ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags36i09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105224.1| Zea mays PCO102615 mRNA sequence Length = 1561 Score = 77.8 bits (39), Expect = 6e-12 Identities = 82/97 (84%) Strand = Plus / Plus Query: 8 gcagggaggacaagaagcctgaacctgcaaaatctcagggcgagaggggaagtgtngatt 67 ||||||| |||||||||||||||| ||||||| ||||| || ||||| ||||| |||| Sbjct: 548 gcagggaagacaagaagcctgaacatgcaaaagtgcagggtgaaaggggcagtgttgatt 607 Query: 68 cccttnttaatttgctcaggagacactcggtggacca 104 | ||| || | |||||||||| |||||| |||||||| Sbjct: 608 cacttcttcagttgctcaggaaacactctgtggacca 644
>ref|XM_470559.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1902 Score = 69.9 bits (35), Expect = 1e-09 Identities = 87/105 (82%) Strand = Plus / Plus Query: 1 ggaaaaggcagggaggacaagaagcctgaacctgcaaaatctcagggcgagaggggaagt 60 |||||||| | |||||| ||||||||||||| |||||| | ||||| |||||||| ||| Sbjct: 496 ggaaaagggaaggaggagaagaagcctgaacaagcaaaagcacagggtgagaggggcagt 555 Query: 61 gtngattcccttnttaatttgctcaggagacactcggtggaccaa 105 || || |||||| | ||| |||| |||| ||||| ||||||||| Sbjct: 556 gttgactcccttctaaatctgcttaggaagcactcagtggaccaa 600
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 1e-09 Identities = 87/105 (82%) Strand = Plus / Minus Query: 1 ggaaaaggcagggaggacaagaagcctgaacctgcaaaatctcagggcgagaggggaagt 60 |||||||| | |||||| ||||||||||||| |||||| | ||||| |||||||| ||| Sbjct: 4341931 ggaaaagggaaggaggagaagaagcctgaacaagcaaaagcacagggtgagaggggcagt 4341872 Query: 61 gtngattcccttnttaatttgctcaggagacactcggtggaccaa 105 || || |||||| | ||| |||| |||| ||||| ||||||||| Sbjct: 4341871 gttgactcccttctaaatctgcttaggaagcactcagtggaccaa 4341827
>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence Length = 122052 Score = 69.9 bits (35), Expect = 1e-09 Identities = 87/105 (82%) Strand = Plus / Plus Query: 1 ggaaaaggcagggaggacaagaagcctgaacctgcaaaatctcagggcgagaggggaagt 60 |||||||| | |||||| ||||||||||||| |||||| | ||||| |||||||| ||| Sbjct: 84566 ggaaaagggaaggaggagaagaagcctgaacaagcaaaagcacagggtgagaggggcagt 84625 Query: 61 gtngattcccttnttaatttgctcaggagacactcggtggaccaa 105 || || |||||| | ||| |||| |||| ||||| ||||||||| Sbjct: 84626 gttgactcccttctaaatctgcttaggaagcactcagtggaccaa 84670
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 1e-09 Identities = 87/105 (82%) Strand = Plus / Minus Query: 1 ggaaaaggcagggaggacaagaagcctgaacctgcaaaatctcagggcgagaggggaagt 60 |||||||| | |||||| ||||||||||||| |||||| | ||||| |||||||| ||| Sbjct: 4342046 ggaaaagggaaggaggagaagaagcctgaacaagcaaaagcacagggtgagaggggcagt 4341987 Query: 61 gtngattcccttnttaatttgctcaggagacactcggtggaccaa 105 || || |||||| | ||| |||| |||| ||||| ||||||||| Sbjct: 4341986 gttgactcccttctaaatctgcttaggaagcactcagtggaccaa 4341942
>dbj|AK067631.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112F11, full insert sequence Length = 3298 Score = 69.9 bits (35), Expect = 1e-09 Identities = 87/105 (82%) Strand = Plus / Plus Query: 1 ggaaaaggcagggaggacaagaagcctgaacctgcaaaatctcagggcgagaggggaagt 60 |||||||| | |||||| ||||||||||||| |||||| | ||||| |||||||| ||| Sbjct: 482 ggaaaagggaaggaggagaagaagcctgaacaagcaaaagcacagggtgagaggggcagt 541 Query: 61 gtngattcccttnttaatttgctcaggagacactcggtggaccaa 105 || || |||||| | ||| |||| |||| ||||| ||||||||| Sbjct: 542 gttgactcccttctaaatctgcttaggaagcactcagtggaccaa 586
>dbj|AK065516.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026O15, full insert sequence Length = 1668 Score = 69.9 bits (35), Expect = 1e-09 Identities = 87/105 (82%) Strand = Plus / Plus Query: 1 ggaaaaggcagggaggacaagaagcctgaacctgcaaaatctcagggcgagaggggaagt 60 |||||||| | |||||| ||||||||||||| |||||| | ||||| |||||||| ||| Sbjct: 494 ggaaaagggaaggaggagaagaagcctgaacaagcaaaagcacagggtgagaggggcagt 553 Query: 61 gtngattcccttnttaatttgctcaggagacactcggtggaccaa 105 || || |||||| | ||| |||| |||| ||||| ||||||||| Sbjct: 554 gttgactcccttctaaatctgcttaggaagcactcagtggaccaa 598
>emb|AJ315791.1|OSA315791 Oryza sativa mRNA for SAP-like protein (BP-73 gene) Length = 1624 Score = 63.9 bits (32), Expect = 9e-08 Identities = 78/94 (82%) Strand = Plus / Plus Query: 12 ggaggacaagaagcctgaacctgcaaaatctcagggcgagaggggaagtgtngattccct 71 |||||| ||||||||||||| |||||| | ||||| |||||||| ||||| || ||||| Sbjct: 612 ggaggagaagaagcctgaacaagcaaaagcacagggtgagaggggcagtgttgactccct 671 Query: 72 tnttaatttgctcaggagacactcggtggaccaa 105 | | ||| |||| |||| ||||| ||||||||| Sbjct: 672 tctaaatctgcttaggaagcactcagtggaccaa 705
>emb|AJ315790.1|OSA315790 Oryza sativa partial BP-73 gene for SAP-like protein Length = 5896 Score = 63.9 bits (32), Expect = 9e-08 Identities = 78/94 (82%) Strand = Plus / Plus Query: 12 ggaggacaagaagcctgaacctgcaaaatctcagggcgagaggggaagtgtngattccct 71 |||||| ||||||||||||| |||||| | ||||| |||||||| ||||| || ||||| Sbjct: 4901 ggaggagaagaagcctgaacaagcaaaagcacagggtgagaggggcagtgttgactccct 4960 Query: 72 tnttaatttgctcaggagacactcggtggaccaa 105 | | ||| |||| |||| ||||| ||||||||| Sbjct: 4961 tctaaatctgcttaggaagcactcagtggaccaa 4994
>emb|AL845552.2|CNS08CBB Human chromosome 14 DNA sequence BAC C-2062F14 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 130569 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ggaaaaggcagggaggacaagaag 24 ||||||||||||||||| |||||| Sbjct: 75092 ggaaaaggcagggaggaaaagaag 75069
>emb|AL133395.21| Human DNA sequence from clone RP11-446H13 on chromosome 10 Contains the 3' end of the gene for VPS10 domain receptor protein SORCS 1 and an RPL23A (60S ribosmal protein 23A) pseudogene, complete sequence Length = 217929 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 aaaggcagggaggacaaga 22 ||||||||||||||||||| Sbjct: 209788 aaaggcagggaggacaaga 209806
>gb|AC067950.5| Homo sapiens BAC clone RP11-375B23 from 2, complete sequence Length = 101721 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 agcctgaacctgcaaaatc 41 ||||||||||||||||||| Sbjct: 67838 agcctgaacctgcaaaatc 67856
>gb|AC079436.2| Rattus norvegicus strain Brown Norway chromosome 4 clone RP31-108L19, complete sequence Length = 174622 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 aaaggcagggaggacaaga 22 ||||||||||||||||||| Sbjct: 122528 aaaggcagggaggacaaga 122546 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 820,757 Number of Sequences: 3902068 Number of extensions: 820757 Number of successful extensions: 49705 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49642 Number of HSP's gapped (non-prelim): 63 length of query: 108 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 87 effective length of database: 17,151,101,840 effective search space: 1492145860080 effective search space used: 1492145860080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
